genome.fa.s90.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  72  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15471612--15485338	180	76.6	177	70	11	4020	41	10	8	40	1.69
15471642--15473122	358	4.1	356	73	10	858	41	10	7	40	1.69
15471699--15473002	537	2.4	535	77	7	1189	41	10	7	40	1.68
15473395--15473862	179	2.6	179	80	5	480	42	11	7	39	1.69
15473315--15474146	358	2.3	359	79	5	858	43	10	6	39	1.65
15474738--15475065	181	1.8	176	81	4	397	41	11	8	38	1.71
15475221--15475270	23	2.2	23	100	0	100	20	12	12	56	1.67
15475248--15485340	181	56.4	180	73	9	5284	41	9	8	40	1.69
15474732--15485629	539	20.2	537	75	8	6681	41	10	8	40	1.69
15476750--15477081	174	1.9	172	84	2	441	42	9	8	39	1.68
15477266--15478596	538	2.5	535	81	4	1452	42	10	8	39	1.69
15480921--15480967	18	2.7	18	83	12	62	44	10	2	42	1.51
15480659--15480995	179	1.9	181	83	2	437	42	10	7	39	1.67
15485228--15485275	17	2.8	17	81	12	53	39	6	4	50	1.47
15485631--15488255	180	14.6	178	73	10	1191	40	8	9	41	1.68
15486989--15487023	18	1.9	18	88	0	52	45	8	8	37	1.65
15487002--15487914	363	2.5	353	77	8	865	40	8	9	41	1.69
15488354--15489128	182	4.3	179	77	5	660	40	7	9	41	1.66
15489439--15489471	18	1.9	17	88	11	50	48	6	6	39	1.53
15489250--15492299	181	17.2	179	74	9	1906	40	8	9	41	1.68
15489330--15492983	361	10.3	359	73	11	1361	40	8	9	41	1.67
15490376--15492299	180	10.9	177	73	10	411	40	8	9	41	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15490376--15492299	352	5.4	354	74	10	1390	40	8	9	41	1.66
15489250--15497976	903	9.7	880	70	15	2640	40	8	9	41	1.68
15490564--15492239	180	9.5	174	72	11	608	40	8	9	42	1.67
15492157--15492454	155	1.9	155	84	4	395	42	7	6	43	1.58
15492014--15492635	336	1.9	336	82	5	801	43	7	8	41	1.63
15492329--15492894	181	3.2	175	79	8	566	41	7	9	42	1.64
15493790--15494102	169	1.9	169	86	4	452	42	7	8	41	1.63
15493773--15496213	181	13.7	181	76	5	1875	40	8	9	41	1.67
15496148--15496284	67	2.0	68	92	1	231	41	7	14	36	1.74
15496215--15497254	181	5.8	180	76	6	879	38	8	10	42	1.70
15496244--15497227	361	2.7	361	77	9	862	39	8	10	41	1.70
15497253--15497946	181	3.9	178	81	7	736	42	7	9	40	1.66
15497332--15497949	181	3.4	179	84	5	768	41	7	9	40	1.67
15501423--15501563	45	3.1	45	79	0	165	20	27	21	30	1.98
15505684--15505723	18	2.2	18	90	0	62	30	40	22	7	1.81
15514781--15514830	22	2.3	22	92	0	82	24	12	32	32	1.91
15517469--15517513	20	2.2	20	96	0	81	33	6	28	31	1.83
15521787--15521948	81	2.0	81	97	0	306	23	20	30	24	1.99
15525236--15527559	181	13.0	180	76	6	1615	41	9	8	40	1.69
15525236--15527559	360	6.5	355	76	7	1712	41	9	8	40	1.69
15527792--15538646	181	59.8	181	71	11	4726	41	9	8	40	1.67
15531590--15531930	174	2.0	174	83	5	431	43	9	7	40	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15527786--15540065	901	13.8	898	73	9	7031	41	9	8	40	1.67
15535283--15536392	182	6.1	182	72	11	433	43	10	7	39	1.68
15538680--15540402	180	9.8	180	73	10	1010	41	9	8	41	1.67
15539206--15539524	170	1.9	170	86	2	453	42	9	7	40	1.65
15538849--15539884	532	2.0	530	80	5	1182	41	8	8	41	1.65
15540318--15540485	83	2.0	83	98	1	329	44	6	8	41	1.60
15540626--15541924	180	7.2	180	78	6	1073	42	9	8	40	1.67
15540626--15541876	361	3.5	357	78	7	1131	42	9	8	40	1.67
15540626--15541876	540	2.3	534	77	8	1235	42	9	8	40	1.67
15542835--15542876	18	2.3	18	87	0	57	42	26	2	28	1.67
15543529--15545534	181	11.2	178	75	8	1457	39	8	10	41	1.69
15543859--15544174	168	1.9	168	84	6	426	39	7	9	43	1.66
15543700--15545534	537	3.4	533	78	6	1497	39	8	10	42	1.69
15545680--15545996	156	2.0	156	99	0	625	41	10	9	38	1.71
15545168--15546171	336	3.0	334	73	6	859	40	8	9	41	1.67
15546193--15546478	149	1.9	149	80	4	328	41	8	8	41	1.66
15546540--15547060	179	2.9	179	77	8	470	38	6	10	44	1.63
15547181--15547821	179	3.6	178	78	7	665	40	7	8	43	1.63
15548055--15548853	181	4.4	180	76	7	711	38	9	9	43	1.69
15548939--15550034	181	6.1	180	79	5	1024	40	8	10	39	1.71
15549019--15554188	358	14.4	360	74	10	2527	41	8	9	40	1.68
15550010--15550049	16	2.5	17	88	12	66	52	0	2	45	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15549891--15550184	149	2.0	148	82	2	356	44	5	8	41	1.58
15550053--15554194	181	23.0	178	74	9	2804	40	8	9	40	1.68
15550053--15554896	358	13.4	355	73	10	2785	40	8	9	41	1.68
15554744--15554792	24	2.1	24	81	7	57	34	6	2	57	1.35
15554925--15555379	176	2.6	175	79	6	402	41	10	7	39	1.68
15554932--15556450	181	8.5	180	76	6	1156	41	9	7	40	1.67
15554932--15556451	723	2.1	713	80	6	1694	41	9	7	40	1.67
15565386--15565428	20	2.2	19	87	4	59	37	9	9	44	1.69
15565411--15569568	181	23.0	179	72	9	2125	41	10	7	40	1.68
15566062--15566094	18	1.9	17	88	11	50	36	12	9	42	1.74
15566161--15566372	105	2.0	105	86	7	297	47	8	7	36	1.61
15566266--15569584	721	4.6	710	76	8	2251	41	10	8	39	1.68
15566344--15569293	540	5.5	534	76	8	2023	41	10	8	39	1.69
15577106--15577178	21	3.5	21	88	3	76	30	23	28	17	1.97
15577101--15577161	21	2.9	21	95	0	104	29	22	31	16	1.96
15578607--15579023	180	2.3	182	78	8	406	40	10	8	41	1.68
15578244--15583580	361	14.8	359	73	9	3481	42	9	8	39	1.67
15578244--15583580	181	29.7	181	74	8	3307	42	9	8	39	1.67
15579900--15579957	25	2.3	25	93	0	98	32	10	10	46	1.72
15580690--15581965	704	1.8	700	80	6	1533	41	9	8	40	1.68
15579935--15590917	540	20.3	533	70	12	2593	41	9	8	40	1.69
15580005--15583552	886	4.0	870	74	10	2827	42	9	8	39	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15583582--15585710	181	11.8	181	76	7	669	40	10	8	40	1.69
15583583--15591091	361	20.6	357	69	13	1981	41	10	8	40	1.69
15583764--15585965	542	4.1	539	79	6	2016	41	10	8	40	1.69
15586129--15586456	176	1.9	173	81	6	403	42	9	8	39	1.68
15586026--15591091	180	28.2	181	74	7	3429	41	9	8	40	1.69
15586026--15591091	539	9.4	535	76	7	3176	41	9	8	40	1.69
15591100--15593537	181	13.6	181	74	6	1512	41	10	8	39	1.68
15591584--15593303	722	2.4	714	76	6	1682	42	10	8	39	1.69
15591104--15593537	359	6.8	356	73	9	1472	41	10	8	39	1.69
15591745--15593528	903	2.0	895	78	5	1873	42	10	8	39	1.69
15593956--15596852	180	16.0	179	71	10	1293	39	8	10	41	1.70
15595773--15595904	67	2.0	67	90	3	212	43	6	13	35	1.71
15595850--15596846	182	5.6	180	77	5	853	38	8	11	41	1.71
15596923--15598804	181	10.5	180	74	7	1071	40	8	10	40	1.70
15596923--15598794	539	3.5	531	77	6	1623	40	8	10	40	1.70
15596923--15598863	358	5.4	358	76	7	1398	40	8	9	40	1.69
15598737--15598984	138	1.8	137	80	2	300	42	8	8	40	1.66
15603621--15603666	23	2.0	24	91	4	76	36	6	2	54	1.39
15603194--15605809	180	14.5	179	75	8	1906	40	8	9	41	1.68
15603194--15605808	363	7.3	357	75	9	1982	40	8	9	41	1.68
15605606--15606039	225	1.9	221	80	6	491	39	8	9	42	1.67
15607014--15607133	52	2.3	52	88	0	177	25	22	9	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15607168--15607198	11	2.8	11	90	0	53	51	32	0	16	1.44
15607450--15607535	25	3.5	24	73	10	84	20	32	5	40	1.77
15607450--15607527	24	3.2	24	81	7	86	20	32	6	41	1.78
15607447--15607558	49	2.3	50	83	7	140	21	33	7	38	1.81
15607552--15607646	31	3.1	31	93	0	154	28	28	18	24	1.98
15608731--15608887	52	3.0	51	89	3	233	26	25	8	40	1.83
15608908--15608943	11	3.3	11	84	0	54	44	30	0	25	1.54
15609019--15609842	181	4.6	180	78	6	640	43	8	8	39	1.66
15612355--15612479	65	1.9	65	91	0	205	32	14	10	43	1.79
15612574--15613196	182	3.4	179	77	8	598	41	11	6	40	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117