genome.fa.s90.2.7.7.80.10.50.1000.75.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  75  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15806064--15809221	181	17.5	179	76	7	2261	40	10	8	40	1.70
15806752--15806805	17	3.1	18	78	10	58	40	9	7	42	1.65
15809255--15810907	181	9.1	178	72	11	762	41	9	7	40	1.67
15809284--15809958	357	1.9	360	81	5	837	42	10	7	39	1.67
15806085--15810855	538	8.8	537	75	8	3386	41	10	8	40	1.69
15810276--15810835	179	3.1	179	75	6	409	42	9	7	40	1.65
15810276--15810873	180	3.3	179	74	5	506	42	9	7	40	1.65
15811160--15812800	181	9.1	181	77	6	1303	40	8	10	40	1.69
15811160--15818682	361	20.9	360	69	12	2519	40	8	10	41	1.70
15811299--15812758	539	2.7	534	80	6	1514	40	8	10	41	1.68
15812663--15812944	146	1.9	146	84	2	370	41	8	9	41	1.67
15813152--15813313	80	2.0	80	89	2	245	34	7	5	52	1.53
15813267--15816244	181	16.8	180	75	6	1987	39	8	10	41	1.70
15815404--15816103	180	3.9	180	79	5	544	39	8	9	42	1.69
15816275--15816575	164	1.8	163	79	6	349	39	8	8	43	1.67
15816566--15818025	181	8.2	179	74	7	929	40	10	9	39	1.71
15816741--15818029	715	1.8	713	80	2	1593	41	9	9	39	1.71
15817978--15818029	18	3.0	17	72	11	52	46	7	5	40	1.57
15817684--15818419	396	1.9	396	80	5	875	40	9	10	39	1.71
15818074--15818746	180	3.8	181	76	8	509	40	8	10	41	1.69
15818074--15818746	181	3.8	178	75	7	576	40	8	10	41	1.69
15818459--15819061	315	1.9	315	81	3	730	39	7	10	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15818769--15819963	181	6.6	179	76	6	725	41	8	10	39	1.71
15818771--15821951	361	8.9	355	69	12	1229	40	8	9	40	1.68
15820385--15821953	358	4.4	355	77	7	1310	40	7	10	41	1.67
15820385--15821951	180	8.8	182	81	6	1413	40	7	10	41	1.67
15820385--15821953	539	2.9	533	80	6	1594	40	7	10	41	1.67
15821904--15821970	35	1.9	35	96	0	125	49	2	7	40	1.46
15821915--15821971	16	3.4	16	72	13	60	50	3	7	38	1.46
15821972--15823380	361	3.9	354	78	7	1292	40	10	8	40	1.69
15821972--15823380	179	7.9	180	80	6	1279	40	10	8	40	1.69
15823356--15823403	18	2.6	18	86	3	51	47	6	4	41	1.48
15823239--15823523	146	2.0	146	81	3	342	40	12	6	40	1.70
15823384--15824327	176	5.3	176	72	10	522	41	9	8	40	1.67
15824512--15824540	14	2.1	14	100	0	58	27	13	13	44	1.82
15824537--15825868	181	7.4	182	75	7	817	40	9	8	41	1.69
15824539--15825427	363	2.5	361	80	5	942	42	8	7	41	1.64
15825775--15826012	120	2.0	120	84	3	309	34	12	8	44	1.72
15825615--15826182	301	1.9	301	81	2	685	38	9	8	43	1.68
15826049--15826685	331	1.9	331	81	6	754	43	9	7	40	1.64
15826371--15827899	181	8.6	181	73	12	663	42	9	8	39	1.68
15827083--15827118	18	1.9	19	88	5	56	58	0	2	38	1.13
15827499--15827822	171	1.9	168	83	6	411	41	10	8	39	1.71
15827977--15833093	541	9.6	525	74	11	1824	41	9	7	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15828405--15834019	361	15.8	358	74	10	3220	41	9	8	40	1.68
15828366--15837874	362	26.6	360	72	11	4955	41	9	8	40	1.68
15828418--15834002	181	31.4	180	74	10	1901	41	9	8	40	1.68
15830222--15830254	17	1.9	17	88	11	50	51	6	3	39	1.42
15830424--15834000	181	20.1	180	75	10	2322	41	9	8	40	1.68
15832776--15832808	18	1.9	17	88	11	50	39	6	6	48	1.53
15828406--15834840	891	7.2	882	74	11	2852	41	9	8	40	1.68
15834055--15834840	179	4.4	180	76	5	692	41	10	8	40	1.69
15835208--15835476	135	2.0	136	83	2	344	44	8	7	38	1.65
15835815--15837874	720	2.9	711	79	5	1918	40	10	8	40	1.69
15835342--15837873	539	4.7	536	76	7	1911	40	10	8	40	1.69
15836901--15836933	18	1.9	17	88	11	50	36	9	3	51	1.49
15835342--15837874	181	14.1	179	76	5	1950	40	10	8	40	1.69
15837879--15839649	181	9.8	180	75	6	1250	40	8	9	41	1.69
15837879--15839654	543	3.3	536	78	6	1667	40	8	9	41	1.69
15839139--15839171	18	1.9	17	88	11	50	48	3	6	42	1.43
15840004--15841163	535	2.2	533	80	6	1283	42	8	9	40	1.66
15840004--15841150	181	6.4	179	79	6	1044	42	8	9	40	1.66
15841184--15841943	176	4.3	174	74	11	463	39	8	10	41	1.69
15840687--15841647	499	1.9	494	80	5	1087	40	8	10	41	1.69
15841174--15842315	179	6.4	178	74	9	543	39	8	10	41	1.70
15842394--15843336	181	5.3	177	76	6	721	40	7	10	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15843536--15843669	63	2.1	63	81	2	151	35	8	6	49	1.59
15843704--15843760	25	2.3	24	87	3	87	56	8	8	26	1.59
15843778--15847110	181	18.6	175	73	9	1811	39	8	10	41	1.69
15844720--15844767	24	2.0	24	83	4	60	31	6	6	56	1.49
15844134--15847110	180	16.6	177	75	7	1922	39	8	10	41	1.69
15843867--15847110	359	9.1	355	73	10	1439	39	8	10	41	1.69
15843833--15846062	717	3.1	710	78	7	1804	39	8	9	41	1.69
15847116--15847179	9	7.2	9	76	13	62	43	0	1	54	1.09
15847127--15847196	35	2.0	35	83	10	90	47	0	0	52	1.00
15847695--15847746	17	3.2	17	79	17	65	48	0	0	51	1.00
15847700--15847753	17	3.2	17	73	26	53	46	0	0	53	1.00
15847705--15847753	24	2.1	23	85	11	64	46	0	0	53	1.00
15847971--15848003	16	2.0	17	88	5	50	45	6	0	48	1.27
15849265--15849318	24	2.2	26	77	12	60	50	1	0	48	1.11
15849374--15849416	18	2.3	18	96	4	77	44	0	0	55	0.99
15849572--15849622	18	2.8	17	75	18	50	49	3	5	41	1.45
15849589--15849656	22	3.1	21	71	21	50	50	2	1	45	1.26
15849750--15849794	13	3.3	13	81	9	54	55	0	0	44	0.99
15849892--15849950	25	2.3	26	80	16	70	45	0	3	50	1.18
15849918--15849951	17	2.0	17	94	0	59	47	0	2	50	1.16
15849918--15849950	9	3.8	9	88	8	50	45	0	3	51	1.16
15850228--15850254	14	1.9	14	100	0	54	51	0	3	44	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15850428--15850462	19	1.9	17	88	11	52	42	0	2	54	1.15
15860060--15860113	22	2.4	23	75	12	58	46	0	0	53	1.00
15860192--15860246	21	2.6	22	83	13	64	52	0	0	47	1.00
15860425--15860458	11	3.1	11	86	0	50	52	0	0	47	1.00
15860667--15860728	23	2.6	23	82	14	65	48	3	0	48	1.17
15861112--15861145	16	2.2	15	89	5	50	50	0	0	50	1.00
15861108--15861182	34	2.2	35	81	11	84	48	0	1	50	1.09
15861244--15861300	27	2.1	27	87	6	80	45	5	5	43	1.49
15861751--15861805	13	3.9	14	75	15	51	52	3	1	41	1.29
15862359--15862434	22	3.3	22	72	18	66	44	2	0	52	1.14
15862658--15862718	27	2.2	29	85	11	83	49	0	1	49	1.10
15862776--15862810	16	2.2	16	90	10	54	34	0	5	60	1.21
15862879--15862911	17	2.0	17	88	5	50	39	0	6	54	1.25
15862925--15863021	41	2.3	41	77	11	99	44	2	4	49	1.33
15863033--15863095	30	2.2	28	78	16	67	44	4	3	47	1.40
15863157--15863187	9	3.4	9	95	0	53	45	0	6	48	1.28
15863398--15863439	22	2.0	20	82	17	50	54	2	2	40	1.26
15863706--15863755	22	2.3	22	86	6	66	42	4	0	54	1.19
15863993--15864036	23	2.0	23	95	4	81	54	2	0	43	1.12
15864068--15864101	14	2.7	12	90	9	50	44	0	5	50	1.26
15864550--15864603	19	2.9	19	77	2	56	38	11	11	38	1.76
15865094--15865148	21	2.6	21	86	13	69	45	3	0	50	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15865412--15865488	38	2.0	38	82	9	95	44	0	2	53	1.14
15865406--15865488	10	8.4	10	77	6	62	44	0	2	53	1.13
15865556--15865588	13	2.4	14	85	10	50	57	0	0	42	0.98
15865725--15865774	23	2.2	23	82	7	57	48	4	0	48	1.20
15865750--15865830	12	6.4	13	72	25	50	46	1	3	48	1.27
15865802--15865836	16	2.1	17	89	5	54	54	0	5	40	1.24
15865967--15866003	18	2.1	18	89	0	56	48	2	8	40	1.47
15866010--15866055	11	4.1	11	76	23	51	50	0	0	50	1.00
15866005--15866057	23	2.3	22	81	18	63	50	0	0	49	1.00
15866446--15866489	14	3.1	14	78	15	54	45	0	0	54	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117