genome.fa.s90.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  115  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20502997--20503082	41	2.1	41	88	0	127	24	16	17	41	1.89
20504426--20504475	26	1.9	26	88	8	75	32	18	24	26	1.97
20506192--20506244	26	2.0	26	89	7	81	30	18	24	26	1.98
20507942--20507994	26	2.0	26	89	7	81	30	22	22	24	1.99
20511534--20511586	26	2.0	26	88	0	79	28	16	26	28	1.97
20512427--20512505	26	3.0	26	90	0	122	27	21	22	27	1.99
20514760--20514838	26	3.0	26	90	0	122	29	18	22	29	1.98
20516322--20516400	26	3.0	26	94	0	131	27	18	24	29	1.98
20518925--20518974	26	1.9	26	87	0	73	30	20	22	28	1.98
20519823--20519875	26	2.0	26	96	0	97	26	18	26	28	1.98
20520714--20520766	26	2.0	26	96	0	97	28	18	26	26	1.98
20517300--20522499	903	5.8	903	87	2	7063	25	23	24	25	2.00
20522691--20526428	862	4.3	866	84	6	4344	24	24	25	25	2.00
20524420--20526416	888	2.2	891	87	3	2872	24	25	25	24	2.00
20526184--20526236	26	2.0	26	96	0	97	28	20	24	26	1.99
20526849--20526901	26	2.0	26	85	7	72	24	18	26	30	1.98
20527753--20527835	26	3.2	26	91	0	139	28	20	25	25	1.99
20526849--20528612	921	1.9	927	88	2	2668	25	23	25	26	2.00
20529197--20529249	26	2.0	26	96	0	97	26	18	26	28	1.98
20531864--20531916	26	2.0	26	92	0	88	28	22	26	22	1.99
20532762--20532814	26	2.0	26	100	0	106	26	20	26	26	1.99
20529192--20536356	894	8.0	897	85	3	9036	25	23	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20533656--20533708	26	2.0	26	92	0	88	26	16	26	30	1.97
20534550--20534602	26	2.0	26	88	0	79	32	18	18	30	1.96
20537277--20537304	4	7.0	4	100	0	56	0	25	75	0	0.81
20540588--20540640	26	2.0	26	100	0	106	26	20	26	26	1.99
20536309--20544337	897	9.1	894	82	6	8946	25	23	25	25	2.00
20543006--20543041	12	2.9	12	95	4	63	41	16	27	13	1.87
20543226--20543278	26	2.0	26	85	0	70	26	20	26	26	1.99
20544130--20544182	26	2.0	26	88	0	79	28	16	24	30	1.97
20542339--20544335	904	2.2	904	86	3	2762	25	24	25	24	2.00
20544101--20544704	185	3.3	184	83	2	735	21	27	28	21	1.99
20544500--20544552	26	2.0	26	88	0	79	26	18	24	30	1.98
20545394--20545443	26	1.9	26	92	8	84	32	18	28	22	1.97
20546289--20546341	26	2.0	26	85	0	70	28	24	22	24	2.00
20544490--20549835	893	6.0	890	87	3	7191	25	23	24	25	2.00
20548066--20548116	26	2.0	26	88	0	75	29	11	25	33	1.91
20544494--20549835	887	6.0	892	87	3	7147	25	23	24	25	2.00
20548951--20549003	26	2.0	26	85	0	70	32	13	22	32	1.92
20549839--20553202	858	3.8	886	86	6	4280	25	24	23	25	2.00
20552348--20552400	26	2.0	26	88	0	79	28	20	24	26	1.99
20553933--20553985	26	2.0	26	92	0	88	28	18	24	28	1.98
20553264--20557503	867	4.8	904	84	7	5249	25	23	25	25	2.00
20556599--20556651	26	2.0	26	92	0	88	30	20	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20559066--20559118	26	2.0	26	92	0	88	24	15	26	33	1.95
20559953--20560005	26	2.0	26	96	0	97	26	18	26	28	1.98
20557475--20560383	872	3.3	881	85	6	3771	25	23	24	26	2.00
20563683--20563735	26	2.0	26	96	0	97	26	24	20	28	1.99
20564583--20564635	26	2.0	26	92	0	88	24	28	20	26	1.99
20561384--20565951	901	5.1	897	86	4	5963	25	24	23	25	2.00
20566178--20566230	26	2.0	26	96	0	97	26	24	20	28	1.99
20566998--20567050	26	2.0	26	92	0	88	26	26	18	28	1.98
20567895--20567947	26	2.0	26	92	0	88	28	24	18	28	1.98
20568787--20568839	26	2.0	26	92	0	88	28	24	18	28	1.98
20570580--20570629	26	1.9	26	88	8	75	26	20	22	32	1.98
20566266--20571923	902	6.3	903	86	3	7365	26	24	23	25	2.00
20572334--20572385	26	2.0	25	92	3	86	26	23	21	28	1.99
20571074--20572776	855	2.0	854	87	1	2457	25	24	24	25	2.00
20573162--20573240	26	3.0	26	96	0	149	26	24	20	29	1.99
20574779--20574831	26	2.0	26	88	0	79	26	20	20	32	1.98
20573909--20589432	893	17.5	874	78	10	13525	25	24	24	25	2.00
20576564--20576616	26	2.0	26	92	0	88	24	24	22	28	2.00
20577467--20577519	26	2.0	26	88	0	79	26	24	20	28	1.99
20573932--20578793	875	5.5	896	85	4	6040	25	24	24	25	2.00
20579183--20579232	26	1.9	26	92	8	84	24	26	18	32	1.97
20580092--20580144	26	2.0	26	96	0	97	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20580979--20581031	26	2.0	26	96	0	97	28	26	18	26	1.98
20581871--20581923	26	2.0	26	100	0	106	26	26	20	26	1.99
20578798--20589432	892	11.9	894	84	5	12193	25	25	24	25	2.00
20584540--20584592	26	2.0	26	92	0	88	26	22	20	30	1.98
20585448--20585500	26	2.0	26	96	0	97	28	26	18	26	1.98
20586153--20586186	12	2.8	12	95	0	59	11	73	14	0	1.10
20586153--20586184	16	2.0	16	93	0	55	9	75	15	0	1.05
20588127--20588178	26	2.0	26	92	0	86	28	25	17	28	1.97
20589019--20589071	26	2.0	26	88	0	79	28	22	20	28	1.99
20591482--20591580	26	3.8	26	90	2	155	29	22	24	24	1.99
20591478--20591580	52	2.0	52	92	3	172	29	22	24	24	1.99
20592374--20592429	26	2.2	26	93	0	94	30	19	21	28	1.98
20593259--20593311	26	2.0	26	92	0	88	30	20	20	28	1.98
20591975--20623190	896	35.0	892	79	8	27164	25	24	24	25	2.00
20597101--20597311	102	2.1	102	95	0	377	23	17	23	36	1.95
20597821--20597873	26	2.0	26	92	0	88	26	20	24	28	1.99
20602229--20602281	26	2.0	26	92	0	88	28	18	24	28	1.98
20603133--20603185	26	2.0	26	96	0	97	28	20	24	26	1.99
20604033--20604084	26	2.0	26	96	0	95	26	17	23	32	1.96
20606673--20606725	26	2.0	26	96	0	97	26	18	26	28	1.98
20607570--20607622	26	2.0	26	96	0	97	26	22	26	24	2.00
20604924--20623190	890	20.5	897	83	5	21678	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20610241--20610293	26	2.0	26	96	0	97	28	20	24	26	1.99
20611125--20611184	26	2.4	26	91	5	97	25	20	28	26	1.99
20612016--20612068	26	2.0	26	96	0	97	26	18	26	28	1.98
20597294--20623190	896	29.1	889	83	6	29248	25	24	24	25	2.00
20612917--20612969	26	2.0	26	85	7	72	28	20	20	30	1.98
20615533--20615583	26	2.0	26	88	0	75	35	15	21	27	1.94
20617322--20617371	26	1.9	26	91	0	82	30	16	26	28	1.96
20621787--20621839	26	2.0	26	92	0	88	30	20	24	24	1.99
20622815--20623608	399	2.0	400	85	4	1087	22	22	23	31	1.99
20623989--20624041	26	2.0	26	92	0	88	30	20	24	24	1.99
20625752--20625802	26	2.0	26	88	7	77	31	21	21	25	1.98
20626655--20626733	26	3.0	26	94	0	140	27	22	25	24	2.00
20623222--20630302	899	7.9	900	83	5	8324	25	24	24	26	2.00
20629358--20629410	26	2.0	26	88	0	79	28	16	26	28	1.97
20628479--20630302	894	2.0	892	85	2	2361	25	24	24	26	2.00
20630250--20630328	26	3.0	26	90	0	122	27	18	25	27	1.98
20631876--20631928	26	2.0	26	96	0	97	28	20	24	26	1.99
20633467--20633571	26	4.0	26	91	0	174	28	18	24	28	1.98
20634349--20634400	26	2.0	25	92	3	86	28	21	23	26	1.99
20632719--20639720	901	7.8	902	84	3	8361	25	23	24	26	2.00
20636156--20636208	26	2.0	26	88	0	79	30	20	20	28	1.98
20637055--20637107	26	2.0	26	100	0	106	26	16	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20637945--20637997	26	2.0	26	96	0	97	26	18	26	28	1.98
20638846--20638898	26	2.0	26	85	7	72	30	20	24	24	1.99
20639789--20639813	11	2.3	11	100	0	50	20	32	28	20	1.97
20640796--20640848	26	2.0	26	88	0	79	32	20	22	24	1.98
20639920--20646688	887	7.6	875	85	5	7735	25	23	25	25	2.00
20643901--20646688	895	3.1	886	81	9	3058	25	24	24	25	2.00
20646117--20646169	26	2.0	26	96	0	97	26	18	26	28	1.98
20646759--20646811	26	2.0	26	85	0	70	30	20	20	28	1.98
20647662--20647714	26	2.0	26	96	0	97	28	20	26	24	1.99
20646777--20649325	875	2.9	887	87	3	3547	24	23	25	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117