genome.fa.s90.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  14  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4087314--4087378	32	2.0	32	82	14	80	47	3	0	49	1.17
4087377--4087419	17	2.5	18	81	11	54	58	0	6	34	1.25
4102346--4102427	38	2.2	38	100	0	164	2	17	26	53	1.56
4104785--4104821	19	1.9	19	88	0	56	27	0	10	62	1.28
4105131--4105182	20	2.7	19	85	11	63	50	7	0	42	1.31
4105351--4105419	28	2.4	29	75	2	68	26	5	8	59	1.50
4105905--4105988	42	2.0	42	83	4	107	54	13	20	11	1.69
4117309--4117813	253	2.0	252	96	1	922	33	20	23	23	1.97
4127704--4128243	263	2.0	265	86	6	761	54	6	5	33	1.49
4130228--4130269	21	2.0	21	86	4	59	54	4	2	38	1.34
4130332--4130364	17	1.9	17	93	0	57	45	0	6	48	1.27
4130484--4130521	2	19.5	2	94	5	69	50	0	0	50	1.00
4136963--4136997	17	2.1	17	100	0	70	57	20	11	11	1.64
4138346--4138378	4	8.5	4	93	6	59	75	0	24	0	0.80
4138907--4138935	11	2.7	11	94	5	51	34	10	0	55	1.34
4139134--4139163	12	2.6	12	94	5	53	63	0	0	36	0.95
4140321--4140364	23	2.0	22	82	8	54	29	9	6	54	1.58
4140769--4140808	17	2.4	17	87	4	55	42	0	0	57	0.98
4140767--4140796	14	2.1	15	93	6	53	46	0	0	53	1.00
4140827--4140883	20	2.5	22	84	15	73	52	0	0	47	1.00
4140822--4140883	13	5.3	13	74	20	57	51	0	0	48	1.00
4140845--4140893	13	3.7	14	76	15	59	59	0	0	40	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4140811--4140891	33	2.5	32	73	15	85	55	0	0	44	0.99
4140782--4140902	57	2.1	54	76	18	120	54	0	0	45	0.99
4142537--4142594	31	1.9	30	82	3	71	36	1	3	58	1.25
4142856--4142887	2	16.0	2	93	0	55	46	0	3	50	1.17
4145674--4145706	14	2.3	15	89	5	50	36	30	6	27	1.81
4146824--4146856	15	2.3	15	89	5	50	63	3	0	33	1.10
4146766--4146920	72	2.1	73	83	5	199	54	3	9	32	1.50
4146853--4147017	62	2.7	61	81	2	199	47	5	12	35	1.64
4146838--4147014	61	2.9	61	76	8	193	49	5	10	34	1.61
4150505--4150540	18	2.1	18	89	5	56	86	0	8	5	0.72
4157954--4158022	26	2.6	27	80	10	81	66	1	17	14	1.32
4158596--4158692	48	2.0	48	89	0	149	40	10	19	29	1.85
4159270--4159323	14	4.1	14	70	20	53	42	5	11	40	1.64
4159832--4159874	17	2.5	17	92	0	68	39	23	4	32	1.75
4159810--4159874	33	1.9	33	84	9	87	40	20	6	33	1.77
4159941--4159996	16	3.4	16	75	2	58	37	17	7	37	1.78
4161131--4161188	10	6.4	9	76	23	52	22	0	3	74	0.97
4161131--4161181	14	3.8	13	80	12	50	21	0	3	74	0.98
4161148--4161177	14	2.1	14	93	0	51	20	0	3	76	0.92
4161154--4161197	22	2.0	21	83	12	54	27	0	4	68	1.09
4162013--4162044	16	2.0	16	93	0	55	65	9	0	25	1.22
4166239--4166263	12	2.1	12	100	0	50	36	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4167256--4167285	15	2.0	15	93	0	51	26	0	3	70	1.03
4169133--4169178	15	3.2	15	75	12	51	45	0	0	54	0.99
4173215--4173296	28	2.9	29	72	17	73	46	1	2	50	1.22
4175591--4175621	13	2.3	13	94	5	53	58	0	0	41	0.98
4175654--4175701	22	2.2	22	85	7	62	41	2	0	56	1.11
4190202--4190259	24	2.4	24	82	8	73	58	1	3	36	1.25
4191481--4191541	32	1.9	32	100	0	122	49	0	9	40	1.36
4194806--4194850	19	2.4	19	85	3	56	11	11	2	75	1.13
4196406--4196463	24	2.4	24	82	5	64	44	37	17	0	1.49
4196406--4196469	30	2.1	30	85	0	83	43	37	17	1	1.58
4209749--4209829	30	2.7	30	76	5	83	50	1	6	41	1.35
4213583--4213615	2	16.5	2	93	0	57	3	45	0	51	1.16
4215584--4215647	33	1.9	33	90	0	101	39	0	14	46	1.44
4215640--4215680	22	1.9	22	85	5	57	63	4	2	29	1.28
4218770--4218945	96	1.8	96	85	2	246	36	12	25	26	1.91
4219751--4219862	56	2.0	56	92	3	190	30	15	29	25	1.95
4219765--4220125	192	1.9	192	91	0	587	32	16	25	26	1.96
4220246--4220335	47	1.9	47	90	4	146	31	13	31	24	1.93
4220291--4220561	136	2.0	136	90	1	427	35	16	19	28	1.94
4222703--4222730	2	14.0	2	100	0	56	0	0	50	50	1.00
4222730--4222758	2	14.5	2	100	0	58	48	0	51	0	1.00
4226277--4226305	2	14.5	2	100	0	58	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4228008--4228043	3	12.0	3	100	0	72	66	0	0	33	0.92
4235840--4235878	20	1.9	21	85	15	55	30	2	0	66	1.05
4236912--4236976	32	2.1	32	82	2	78	49	3	3	44	1.33
4236977--4237026	22	2.3	23	86	6	68	50	4	0	46	1.20
4236991--4237078	31	2.9	32	80	9	96	51	2	0	46	1.13
4237002--4237093	32	3.1	31	82	13	106	50	2	0	47	1.13
4240708--4240736	13	2.2	13	100	0	58	72	0	0	27	0.85
4242374--4242410	18	2.0	19	94	5	67	35	0	0	64	0.94
4242374--4242410	19	2.0	18	89	5	56	35	0	0	64	0.94
4247849--4247895	22	2.1	22	84	0	58	29	27	12	29	1.93
4257343--4257374	17	1.9	17	93	6	57	53	3	0	43	1.16
4259839--4260302	231	2.0	231	100	0	928	35	19	15	30	1.92
4271121--4271238	62	1.9	60	80	11	132	34	14	11	38	1.83
4271333--4271505	65	2.7	64	87	4	233	38	11	11	38	1.78
4271333--4271513	64	2.8	65	87	4	242	37	11	11	40	1.77
4274373--4274451	34	2.3	34	82	0	86	36	16	12	34	1.87
4274568--4274621	6	9.0	6	84	11	67	22	0	0	77	0.76
4274571--4274621	10	4.9	10	75	15	50	21	0	0	78	0.75
4274568--4274621	16	3.4	16	80	14	67	22	0	0	77	0.76
4274954--4274979	11	2.4	11	100	0	52	23	0	15	61	1.33
4274996--4275061	31	2.1	32	83	8	82	24	10	16	48	1.78
4275476--4275526	8	6.1	8	76	14	50	7	1	7	82	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4275470--4275538	27	2.5	26	76	15	68	10	1	8	79	0.99
4275643--4275684	17	2.5	17	88	3	59	57	4	0	38	1.20
4275718--4275758	16	2.6	16	88	7	57	56	9	0	34	1.32
4275606--4275799	75	2.6	75	90	1	302	51	4	7	37	1.51
4275826--4276043	60	3.6	59	83	9	262	50	4	9	35	1.56
4275816--4276043	61	3.8	62	82	10	276	49	4	10	35	1.58
4275734--4276046	119	2.7	119	82	7	295	49	5	9	35	1.58
4279565--4279594	16	1.9	15	93	6	51	36	30	13	20	1.90
4290381--4290427	22	2.1	22	84	0	58	29	27	12	29	1.93
4313753--4313930	65	2.8	64	79	9	202	37	8	11	42	1.72
4313771--4313956	63	2.9	63	84	4	232	37	10	11	40	1.76
4315827--4315887	31	1.9	32	96	3	115	19	21	6	52	1.68
4315827--4315879	13	3.2	19	65	34	57	22	18	7	50	1.72
4316838--4316911	34	2.2	34	87	0	103	36	10	9	43	1.72
4317019--4317078	6	10.0	6	82	10	61	25	0	0	75	0.81
4317023--4317075	3	17.7	3	81	14	65	26	0	0	73	0.83
4317023--4317075	16	3.3	16	92	5	81	26	0	0	73	0.83
4318095--4318136	17	2.5	17	88	3	59	57	4	0	38	1.20
4318041--4318251	75	2.8	74	88	4	309	51	4	7	36	1.51
4318278--4318419	60	2.4	60	77	15	143	50	4	10	35	1.57
4324124--4324193	29	2.4	29	75	0	77	41	0	1	57	1.08
4329494--4329518	13	1.9	13	100	0	50	20	0	8	72	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4329635--4329676	17	2.4	18	88	11	70	52	7	0	40	1.29
4329655--4330024	60	6.1	58	74	15	295	49	4	9	36	1.57
4329602--4329801	75	2.7	75	86	8	263	50	4	7	38	1.49
4329714--4329744	15	2.0	16	93	6	55	58	6	0	35	1.24
4329730--4330024	60	5.1	59	79	8	331	49	4	10	36	1.57
4329730--4330013	119	2.5	112	89	7	412	50	3	10	35	1.55
4330713--4330747	2	17.5	2	100	0	70	48	0	0	51	1.00
4330784--4330826	16	2.9	15	77	16	54	16	9	0	74	1.06
4332845--4332898	22	2.5	22	78	3	65	51	0	0	48	1.00
4333922--4333953	15	2.1	16	88	11	50	59	0	0	40	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117