genome.fa.s90.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  70  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14976291--14976389	34	2.9	34	77	5	92	51	9	20	19	1.73
14976902--14976958	22	2.6	21	81	13	71	40	14	15	29	1.87
14977409--14977559	23	6.7	23	84	6	146	27	15	23	33	1.94
14977387--14977574	45	4.2	45	77	7	139	26	15	25	33	1.95
14977520--14977585	23	2.9	23	86	4	89	21	13	27	37	1.91
14977387--14977617	68	3.4	67	76	4	196	25	15	25	33	1.95
14977852--14977888	18	2.0	19	89	5	58	0	18	8	72	1.08
14977852--14977898	19	2.6	18	83	10	51	0	14	10	74	1.07
14979965--14980002	18	2.2	18	90	9	62	5	5	7	81	0.98
14982347--14982446	38	2.6	38	79	0	101	35	11	26	28	1.90
14983675--14983707	15	2.2	15	94	0	57	66	3	6	24	1.28
14984824--14984883	15	4.0	15	82	8	68	25	5	18	51	1.66
14984858--14984886	15	1.9	15	100	0	58	20	10	20	48	1.79
14984887--14984960	34	2.2	34	82	0	85	13	2	32	51	1.55
14984924--14985000	16	4.8	16	66	23	54	19	0	23	57	1.41
14984932--14985007	24	3.2	23	75	15	75	19	0	23	56	1.42
14988877--14988923	24	2.0	24	95	0	85	51	6	12	29	1.65
14988878--14988934	24	2.5	22	86	8	71	52	5	14	28	1.62
14995664--14996118	123	3.7	120	79	7	425	41	12	8	37	1.72
15002063--15002089	11	2.5	11	100	0	54	25	0	7	66	1.17
15004239--15004776	56	9.8	54	77	10	391	33	8	7	50	1.62
15004230--15004776	111	5.0	108	74	11	368	33	8	7	50	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15004646--15004733	28	3.2	28	62	19	67	28	9	5	56	1.53
15005834--15005883	13	3.8	13	81	5	64	78	0	8	14	0.97
15005832--15005883	27	1.9	27	92	0	86	76	0	7	15	0.99
15005832--15005892	27	2.3	27	82	0	77	72	3	6	18	1.21
15006190--15006356	84	2.0	85	86	3	239	34	10	16	38	1.82
15006895--15006969	30	2.5	30	88	0	105	33	12	8	46	1.70
15006912--15006987	30	2.5	30	82	4	82	38	13	5	43	1.66
15009190--15009242	24	2.2	26	80	16	60	35	0	5	58	1.22
15011921--15011979	25	2.4	24	80	11	57	3	15	3	77	1.02
15012910--15012958	25	2.0	25	88	8	73	48	4	6	40	1.47
15017126--15017250	7	17.4	7	76	15	69	74	0	17	7	1.09
15017108--15017211	14	7.1	14	77	16	72	73	0	21	5	1.04
15017123--15017162	18	2.3	18	95	4	73	67	0	22	10	1.20
15017120--15017212	21	4.2	21	76	8	87	75	0	19	5	0.99
15017120--15017212	14	6.3	14	80	8	87	75	0	19	5	0.99
15018598--15018636	20	2.0	20	89	0	60	33	12	23	30	1.92
15018494--15018866	109	3.4	109	89	2	572	34	11	17	35	1.86
15018813--15018853	20	2.0	20	85	0	55	34	12	21	31	1.91
15018771--15018915	64	2.3	63	83	7	168	37	11	17	33	1.86
15018805--15018925	64	1.9	65	89	1	190	34	9	19	36	1.85
15021776--15021884	55	2.0	56	92	1	184	58	5	13	22	1.56
15024706--15024734	10	3.0	10	95	5	51	62	0	0	37	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15026042--15026131	13	6.9	13	71	8	58	21	5	23	50	1.70
15027796--15027847	3	18.0	3	90	7	81	28	0	1	69	0.99
15029182--15029249	6	11.3	6	75	21	63	4	19	0	76	0.95
15029182--15029243	20	3.4	19	72	22	69	4	19	0	75	0.97
15029922--15029960	10	3.8	10	80	6	51	0	17	0	82	0.68
15031386--15031952	285	2.0	283	94	2	985	29	19	11	40	1.86
15042969--15043012	9	5.1	8	89	8	52	25	0	2	72	0.96
15042974--15043013	3	14.0	3	87	10	57	27	0	2	70	1.01
15043876--15043954	33	2.3	34	80	10	90	51	7	17	22	1.70
15044347--15044402	20	2.9	19	78	17	62	3	19	0	76	0.93
15045075--15045113	10	3.7	10	83	10	51	0	17	0	82	0.68
15045074--15045106	17	1.9	17	88	11	50	0	21	0	78	0.75
15046533--15047099	285	2.0	283	93	2	976	29	19	11	40	1.86
15054646--15054700	26	2.2	25	87	9	78	38	21	20	20	1.94
15056870--15056923	23	2.3	23	81	6	65	81	5	9	3	0.97
15059735--15059764	13	2.3	13	94	0	51	13	3	3	80	0.97
15059764--15059788	13	1.9	13	100	0	50	32	4	0	64	1.12
15059784--15059828	18	2.4	19	88	7	65	20	4	4	71	1.21
15063033--15063082	24	2.1	24	81	7	57	46	2	2	50	1.24
15063119--15063160	22	1.9	22	90	0	66	57	2	2	38	1.25
15063174--15063255	24	3.5	22	71	24	60	56	1	4	37	1.29
15063174--15063256	25	3.5	21	73	18	58	55	1	4	38	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15064078--15064120	18	2.4	18	84	11	61	44	4	0	51	1.22
15065081--15065110	15	2.1	15	93	6	53	56	0	0	43	0.99
15072253--15072300	23	2.0	24	96	4	89	41	0	4	54	1.20
15073016--15073060	3	15.0	3	100	0	90	33	0	0	66	0.92
15075358--15075542	3	64.0	3	66	20	74	31	3	4	59	1.36
15075397--15075538	5	27.2	5	73	16	76	35	4	4	55	1.41
15075396--15075542	18	8.1	18	72	17	85	34	4	4	56	1.39
15075990--15076033	11	4.0	11	84	0	61	31	0	20	47	1.50
15081844--15082002	66	2.4	66	81	5	187	18	22	14	44	1.86
15082397--15082512	5	22.2	5	70	18	67	35	3	6	55	1.42
15082419--15082515	13	7.4	12	72	20	70	37	3	4	55	1.35
15097355--15097464	51	2.1	52	83	8	136	14	0	34	50	1.50
15097411--15097541	16	8.5	15	76	12	122	16	0	34	48	1.51
15097421--15097533	15	7.2	16	71	12	83	16	0	31	50	1.52
15097411--15097541	31	4.2	30	75	11	122	16	0	34	48	1.51
15098940--15099008	14	4.9	14	80	5	77	8	2	10	78	1.07
15098961--15099002	18	2.4	18	84	11	52	11	0	9	78	0.96
15099145--15099371	110	2.1	110	86	2	314	42	17	16	23	1.89
15099224--15099519	133	2.2	132	81	7	334	37	18	20	23	1.94
15099492--15099549	22	2.7	21	77	17	73	25	22	25	25	2.00
15099463--15099549	44	2.0	44	86	4	122	28	21	25	24	1.99
15099608--15099699	22	4.2	22	88	0	121	28	17	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15099327--15099700	154	2.4	153	80	5	441	33	19	23	24	1.97
15099872--15099905	16	2.2	16	94	5	61	23	0	11	64	1.26
15100430--15100812	33	11.7	33	85	5	449	33	17	20	28	1.95
15102080--15102117	10	3.5	11	82	10	51	2	13	0	84	0.73
15102111--15102142	17	1.9	16	93	6	55	0	0	12	87	0.54
15102080--15102134	9	5.8	9	83	10	56	1	9	5	83	0.86
15108838--15108941	51	2.0	52	83	9	133	14	0	35	50	1.43
15108922--15109034	15	7.2	15	73	9	91	15	0	35	47	1.52
15108889--15109035	16	9.4	16	75	12	119	17	0	34	48	1.52
15108892--15109034	31	4.6	32	79	9	163	17	0	32	48	1.52
15110156--15110185	12	2.6	11	90	10	51	3	0	10	86	0.67
15110429--15110515	16	5.2	17	69	17	65	9	3	10	77	1.11
15110449--15110511	15	4.3	14	82	9	81	9	1	9	79	1.01
15110448--15110489	18	2.4	18	84	11	52	7	2	9	80	0.97
15110452--15110509	29	2.0	30	86	10	84	10	1	10	77	1.06
15110462--15110509	18	2.8	18	82	14	57	12	0	10	77	1.00
15112071--15112095	13	1.9	13	100	0	50	64	0	0	36	0.94
15113172--15113454	142	2.0	141	98	0	548	32	16	12	38	1.86
15115265--15115299	15	2.2	16	95	5	63	62	0	0	37	0.95
15115535--15115570	18	2.0	18	100	0	72	33	11	16	38	1.84
15118573--15118616	22	2.0	22	86	4	61	63	2	15	18	1.41
15120403--15120475	32	2.4	31	84	6	94	54	4	17	23	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15120452--15120537	32	2.8	31	75	8	86	55	6	10	26	1.59
15122754--15122791	13	2.9	13	88	0	58	23	7	7	60	1.51
15124262--15124709	161	2.8	161	82	6	421	32	10	16	40	1.83
15125895--15125928	17	2.1	16	88	5	50	55	2	2	38	1.30
15125968--15126040	33	2.2	33	85	9	96	28	13	20	36	1.91
15126132--15126249	34	3.5	34	80	2	130	36	12	14	36	1.84
15126108--15126237	67	1.9	67	87	0	188	36	13	15	35	1.86
15126105--15126237	33	4.0	34	73	2	108	36	13	15	35	1.86
15126105--15126283	67	2.7	66	75	6	155	34	14	15	35	1.88
15132323--15132412	46	2.0	46	84	0	117	30	12	22	35	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117