genome.fa.s90.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  35  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8839335--8839384	18	2.7	18	93	3	82	68	12	4	16	1.35
8840428--8840470	20	2.2	20	82	0	50	39	44	6	9	1.64
8840523--8840562	17	2.4	16	95	4	71	17	0	0	82	0.67
8840523--8840562	8	4.9	8	87	6	62	17	0	0	82	0.67
8840525--8840575	16	3.2	16	79	20	54	19	1	0	78	0.85
8840528--8840582	21	2.7	21	80	11	60	20	1	1	76	0.97
8840527--8840582	16	3.6	14	76	23	51	19	1	1	76	0.96
8840877--8840908	17	1.9	16	93	6	55	71	3	0	25	1.00
8840885--8840925	20	2.0	21	90	4	66	75	4	0	19	0.98
8841081--8841130	18	2.7	19	79	14	61	74	2	0	24	0.93
8841079--8841132	17	3.4	15	78	16	56	72	1	0	25	0.95
8842689--8842719	3	10.3	3	100	0	62	32	0	0	67	0.91
8845793--8845880	44	2.0	44	93	2	151	44	20	13	21	1.86
8847015--8847050	16	2.2	17	90	5	56	55	0	0	44	0.99
8847292--8847360	29	2.4	30	82	4	88	27	8	10	53	1.64
8854811--8855041	125	1.8	125	86	1	338	43	21	15	19	1.88
8858832--8858958	4	31.8	4	71	15	59	25	2	3	67	1.20
8859006--8859068	25	2.7	24	79	13	69	22	4	4	68	1.28
8859547--8859588	20	2.1	20	90	0	66	33	7	16	42	1.75
8859925--8859976	21	2.5	20	87	6	77	19	0	3	76	0.93
8859925--8859976	4	12.8	4	83	4	68	19	0	3	76	0.93
8859998--8860085	5	16.8	5	73	19	65	13	6	2	77	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8859996--8860085	16	5.8	14	72	24	58	13	6	2	77	1.05
8860099--8860465	58	6.2	58	82	8	398	45	7	11	35	1.70
8860099--8860507	118	3.4	118	82	7	468	44	7	12	35	1.71
8862431--8862473	20	2.2	20	82	0	50	39	44	6	9	1.64
8862535--8862569	8	4.4	8	92	0	61	14	0	0	85	0.59
8862531--8862589	24	2.4	25	77	13	68	18	1	1	77	0.93
8862884--8862915	17	1.9	16	93	6	55	71	3	0	25	1.00
8862892--8862932	20	2.0	21	90	4	66	75	4	0	19	0.98
8863090--8863142	18	2.8	19	77	13	56	71	1	0	26	0.96
8864711--8864745	3	11.7	3	100	0	70	34	0	0	65	0.93
8867816--8867903	44	2.0	44	93	2	151	44	20	13	21	1.86
8869043--8869079	17	2.2	17	90	0	56	56	0	0	43	0.99
8869325--8869393	29	2.4	30	85	4	97	26	8	11	53	1.65
8876838--8877068	125	1.8	125	86	0	336	43	21	15	19	1.88
8894353--8894394	22	1.9	22	85	9	59	26	11	2	59	1.45
8897657--8897706	15	3.3	15	85	0	64	78	0	10	12	0.98
8897664--8897711	15	3.3	15	79	2	53	81	0	10	8	0.88
8898684--8898766	24	3.4	24	72	9	69	37	1	3	57	1.24
8901662--8901701	22	1.9	21	85	10	55	77	7	0	15	0.98
8902452--8902482	16	1.9	16	93	0	53	41	22	9	25	1.84
8902488--8902526	18	2.2	18	90	0	60	38	17	7	35	1.79
8902541--8902581	16	2.6	16	84	0	64	39	24	12	24	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8902806--8902921	22	5.2	22	68	12	60	46	17	7	28	1.75
8902848--8903166	46	6.9	46	69	18	155	40	13	9	36	1.77
8902898--8902971	24	3.2	24	66	14	64	41	16	2	39	1.62
8902898--8902973	23	3.3	23	68	15	66	43	15	2	38	1.61
8904685--8904743	13	4.5	13	74	17	52	5	11	1	81	0.93
8904685--8904741	26	2.3	26	85	11	75	5	12	1	80	0.95
8904711--8904749	14	2.8	14	84	0	51	5	7	0	87	0.68
8905093--8905118	9	2.9	9	100	0	52	11	7	0	80	0.89
8910003--8910045	22	1.9	23	85	4	61	41	0	6	51	1.29
8910445--8910491	15	2.8	16	79	20	51	6	10	2	80	0.96
8910816--8910871	26	2.1	27	83	9	71	58	5	1	33	1.31
8911958--8911997	18	2.2	18	86	0	53	2	10	2	85	0.80
8912095--8912134	18	2.2	19	95	4	73	27	0	0	72	0.85
8912987--8913046	29	2.1	27	81	6	66	48	0	0	51	1.00
8926909--8927005	22	4.5	21	73	13	74	43	10	11	35	1.75
8927082--8927176	18	5.2	19	80	10	108	51	9	10	28	1.67
8927082--8927123	17	2.3	18	80	12	50	54	9	9	26	1.63
8927081--8927176	36	2.7	36	83	4	122	52	9	10	28	1.66
8927169--8927421	43	5.7	43	75	12	165	45	9	14	30	1.75
8927116--8927418	134	2.2	136	86	6	411	46	8	13	31	1.74
8927413--8927620	22	9.4	23	67	14	107	41	17	8	32	1.79
8927407--8927662	44	5.8	44	85	4	320	41	17	8	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8927524--8927605	21	3.8	21	74	15	69	43	18	7	30	1.77
8927406--8927674	131	2.0	133	87	2	400	40	17	9	32	1.81
8928409--8928489	15	5.7	15	74	11	71	41	6	19	32	1.76
8928407--8928489	28	3.0	28	78	5	87	42	7	19	31	1.78
8932421--8932476	26	2.0	28	86	10	80	44	5	14	35	1.68
8935691--8935756	27	2.5	25	75	7	60	50	3	0	46	1.16
8935901--8935936	18	2.1	17	94	5	63	41	2	0	55	1.14
8936609--8936683	31	2.4	31	80	10	82	40	9	9	41	1.69
8936777--8936857	40	2.0	39	81	13	94	45	4	0	49	1.23
8936785--8936868	14	6.2	14	71	19	63	47	4	0	47	1.23
8940993--8941160	83	2.0	83	96	0	309	41	10	9	38	1.71
8943110--8943155	17	2.5	19	83	16	62	67	13	8	10	1.42
8943148--8943200	24	2.2	24	80	6	63	75	3	15	5	1.13
8943154--8943199	24	1.9	25	86	8	69	76	0	17	6	1.00
8943302--8943340	16	2.6	15	80	11	53	51	23	5	20	1.67
8944326--8944976	336	1.9	333	88	4	979	39	8	7	44	1.63
8947467--8947495	9	3.2	9	100	0	58	79	0	0	20	0.74
8948408--8948543	64	2.1	64	98	0	263	54	5	13	26	1.61
8949726--8949756	1	31.0	1	100	0	62	0	0	0	100	0.00
8949839--8949896	17	3.4	17	79	11	57	43	3	10	43	1.55
8949864--8949912	20	2.5	19	80	6	53	46	8	6	38	1.58
8957862--8957999	70	2.0	71	91	1	224	35	18	16	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8959394--8959577	96	1.9	96	92	0	305	47	11	12	28	1.77
8966871--8967338	235	2.0	235	85	2	636	35	8	26	29	1.87
8967415--8967756	167	2.1	167	93	0	587	36	6	25	31	1.82
8977258--8977302	21	2.2	20	84	4	54	53	0	2	44	1.13
8977240--8977299	18	3.5	17	76	17	61	55	0	3	41	1.16
8977245--8977309	34	1.9	34	81	6	78	53	1	4	40	1.31
8978695--8979061	200	1.8	199	83	5	490	26	11	8	54	1.63
8981516--8981545	3	10.0	3	92	0	51	66	3	0	30	1.07
8981517--8981555	12	3.2	12	85	7	53	66	7	0	25	1.18
8985584--8985614	16	1.9	16	93	0	53	48	9	9	32	1.69
8987538--8987579	2	21.0	2	100	0	84	50	0	0	50	1.00
8992457--8992516	29	2.1	29	81	6	68	50	0	5	45	1.23
8992614--8992673	29	2.1	29	87	0	84	46	3	1	48	1.28
8993391--8993415	1	25.0	1	100	0	50	0	0	0	100	0.00
9001219--9001291	37	2.0	37	97	0	137	31	21	8	38	1.83
9001568--9001637	33	2.1	33	81	5	79	21	31	5	41	1.76
9001735--9001824	42	2.1	42	85	0	126	22	26	6	44	1.77
9002355--9002382	14	2.0	14	100	0	56	28	14	0	57	1.38
9002756--9002829	36	2.1	36	92	0	121	47	13	9	29	1.74
9002795--9002910	42	2.8	42	82	2	135	51	11	10	26	1.69
9002839--9002926	42	2.1	42	85	4	115	57	6	9	26	1.54
9009640--9009974	166	2.0	167	88	1	494	29	15	14	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9014128--9014199	31	2.3	31	80	7	92	52	6	27	12	1.64
9016815--9016862	19	2.5	19	80	6	53	25	8	14	52	1.69
9016903--9017018	56	2.0	57	91	3	189	39	12	20	27	1.88
9022180--9022287	54	2.0	55	87	5	157	28	4	12	54	1.57
9022988--9023061	30	2.5	30	72	0	76	40	14	4	40	1.65
9039494--9039541	11	4.8	11	80	17	52	54	2	0	43	1.12
9043788--9043828	19	2.2	19	86	8	57	46	2	2	48	1.28
9043953--9043994	17	2.6	16	85	14	59	26	9	11	52	1.68
9045352--9045378	13	2.1	13	100	0	54	22	0	7	70	1.12
9045351--9045385	13	2.8	12	87	8	52	25	0	5	68	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117