genome.fa.s90.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  46  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10863537--10863610	25	3.0	25	87	0	76	45	33	4	16	1.66
10863570--10863634	12	5.3	12	81	3	67	40	29	9	21	1.84
10863555--10863615	12	4.9	12	74	7	50	45	29	6	18	1.74
10863554--10863615	25	2.5	25	94	0	106	45	30	6	17	1.74
10864202--10864311	54	2.0	54	83	0	139	40	9	14	35	1.78
10864256--10865366	186	6.0	185	83	4	1286	41	11	12	34	1.79
10864256--10865366	372	3.0	372	85	2	1443	41	11	12	34	1.79
10865200--10865423	124	1.8	124	81	3	281	41	12	12	33	1.82
10872564--10872615	21	2.5	21	75	3	61	51	13	17	17	1.76
10873261--10873326	34	1.9	34	81	0	78	40	18	9	31	1.81
10875177--10875233	24	2.4	24	77	14	64	36	1	0	61	1.07
10875183--10875223	22	1.9	21	85	14	57	36	2	0	60	1.10
10875536--10875600	32	2.1	31	91	2	103	43	6	12	38	1.67
10884859--10884897	7	5.6	7	81	0	51	84	0	15	0	0.62
10905658--10905712	25	2.1	26	83	12	69	38	3	12	45	1.60
10906606--10906653	25	1.9	25	82	0	60	45	2	6	45	1.40
10906695--10906907	106	2.0	106	85	5	288	50	2	7	38	1.45
10906703--10906900	51	3.7	55	74	11	169	49	2	7	40	1.45
10906695--10906939	106	2.3	104	81	6	260	51	2	7	38	1.44
10907400--10907453	23	2.3	23	71	6	56	66	5	1	25	1.23
10908755--10908804	21	2.4	21	93	0	91	36	30	2	32	1.69
10910089--10910118	15	1.9	16	93	6	53	53	0	6	40	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10912701--10912730	2	15.0	2	100	0	60	50	0	0	50	1.00
10915446--10915602	52	3.0	52	86	3	192	40	8	25	25	1.84
10920388--10920429	15	2.6	17	82	14	54	40	0	0	59	0.97
10920388--10920429	8	5.2	8	82	5	50	40	0	0	59	0.97
10920390--10920431	16	2.7	15	85	7	57	42	0	0	57	0.99
10920939--10921073	10	13.3	10	71	20	77	57	1	0	40	1.08
10920927--10921054	33	3.9	33	72	18	108	56	0	0	42	1.05
10920951--10921051	23	4.2	24	77	18	95	55	0	0	43	1.06
10921108--10921177	36	2.0	35	83	13	90	50	2	1	45	1.25
10921136--10921183	16	3.0	16	81	6	53	50	4	2	43	1.33
10921153--10921220	25	2.7	26	86	4	86	45	5	0	48	1.26
10925452--10925535	34	2.4	34	86	7	116	44	2	10	42	1.52
10927379--10927434	22	2.5	22	73	2	58	46	0	7	46	1.30
10927265--10928448	598	2.0	590	88	6	1754	40	3	8	47	1.50
10928169--10928201	14	2.3	15	89	5	50	30	6	3	60	1.36
10931341--10931384	6	7.3	6	94	0	70	20	0	45	34	1.51
10931730--10931802	18	4.1	18	82	5	94	34	28	5	31	1.80
10932091--10932144	23	2.3	23	77	6	54	42	7	3	46	1.49
10934081--10934169	34	2.7	34	85	3	128	34	12	13	39	1.82
10934774--10934808	3	11.7	3	87	0	52	65	5	0	28	1.15
10938340--10938397	3	19.3	3	100	0	116	67	0	0	32	0.91
10941638--10941685	18	2.6	19	87	6	73	68	4	0	27	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10941638--10941693	18	3.0	19	82	7	62	66	7	0	26	1.18
10941679--10941746	21	3.3	20	83	4	82	58	8	1	30	1.37
10941780--10941886	9	11.4	9	68	21	51	62	2	0	33	1.16
10941795--10941838	21	2.1	21	87	4	63	70	2	2	25	1.10
10941802--10941888	10	8.8	10	69	16	56	62	2	1	34	1.16
10941925--10942031	50	2.2	49	80	11	121	63	2	0	32	1.15
10942028--10942080	27	2.0	27	85	7	72	22	0	3	73	0.99
10942077--10942127	17	3.0	18	86	8	54	35	3	1	58	1.28
10942084--10942127	16	2.6	17	89	10	65	36	4	0	59	1.18
10942100--10942154	30	1.9	29	82	10	69	34	3	3	58	1.33
10942112--10942161	18	2.6	19	78	6	57	34	2	4	60	1.27
10942112--10942232	26	4.5	26	71	21	74	33	2	4	59	1.32
10942150--10942234	18	4.8	17	72	11	73	32	2	4	60	1.30
10942102--10942237	36	3.8	35	72	11	98	36	2	4	56	1.34
10942229--10942272	21	2.1	21	87	4	63	47	2	0	50	1.13
10944028--10944072	23	2.0	23	90	0	72	48	2	2	46	1.26
10954178--10954239	32	1.9	32	83	0	79	45	0	0	54	0.99
10954278--10954340	22	2.8	23	75	18	60	38	0	0	61	0.96
10954307--10954388	13	6.4	12	75	17	58	35	0	0	64	0.94
10954321--10954388	17	3.9	18	83	11	79	32	0	0	67	0.91
10954320--10954380	24	2.6	23	86	2	86	31	0	0	68	0.89
10954969--10955014	6	7.7	6	85	9	67	52	32	15	0	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10971202--10971226	11	2.3	11	100	0	50	56	16	0	28	1.41
10971794--10971857	27	2.4	27	82	7	69	56	6	14	23	1.61
10976785--10976851	19	3.5	19	78	11	75	37	38	1	22	1.63
10977812--10977854	10	4.7	9	88	11	61	76	2	11	9	1.10
10977813--10977854	17	2.3	18	92	8	68	76	2	11	9	1.12
10977869--10977922	26	2.1	26	89	0	81	25	12	3	57	1.52
10978444--10978487	13	3.2	13	81	12	52	75	0	11	13	1.06
10978454--10978488	15	2.4	15	95	4	63	80	0	11	8	0.92
10983038--10983308	135	2.0	135	100	0	542	45	14	9	31	1.76
10987558--10987739	26	6.8	26	68	17	95	24	11	18	45	1.82
10987512--10987742	110	2.1	110	100	0	462	25	11	17	45	1.81
10992259--10994770	159	15.8	156	74	9	1508	39	12	16	31	1.85
10992259--10994770	319	7.9	315	75	9	1425	39	12	16	31	1.85
10992259--10994770	478	5.3	474	76	7	1732	39	12	16	31	1.85
11009527--11009568	21	2.0	21	85	0	57	64	16	4	14	1.45
11010002--11010035	17	2.0	17	100	0	68	52	0	17	29	1.45
11014198--11014230	10	3.4	10	91	4	50	63	9	12	15	1.51
11014558--11014597	20	2.0	21	85	5	55	25	20	7	47	1.75
11020316--11020383	18	3.5	19	80	11	75	30	16	8	44	1.78
11020726--11020792	23	3.0	23	84	2	82	37	10	13	38	1.79
11022311--11022604	55	5.4	54	77	7	254	34	8	8	48	1.63
11022344--11022542	111	1.8	108	83	5	265	35	9	7	48	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11022311--11022604	109	2.7	109	77	11	301	34	8	8	48	1.63
11022311--11022604	54	5.4	54	76	9	254	34	8	8	48	1.63
11024708--11024874	17	9.8	17	68	8	97	45	12	7	34	1.71
11024675--11024905	34	6.7	33	74	11	144	45	12	8	33	1.72
11024720--11024905	69	2.7	68	83	5	223	44	11	8	35	1.71
11025062--11025186	23	5.6	22	71	12	94	41	16	7	35	1.75
11026035--11026059	4	6.2	4	100	0	50	24	24	0	52	1.48
11027431--11027490	23	2.6	23	91	0	102	40	20	13	26	1.89
11030686--11030978	53	5.3	56	76	13	231	36	7	4	50	1.52
11030662--11030978	54	5.8	51	75	14	205	36	7	5	50	1.54
11030623--11030978	55	6.5	54	75	15	247	36	8	5	49	1.57
11030708--11031001	107	2.7	109	85	9	347	36	7	4	51	1.50
11037000--11037059	12	4.8	12	78	17	61	18	1	1	78	0.92
11037013--11037059	19	2.5	18	86	10	67	19	2	0	78	0.85
11037026--11037068	19	2.3	19	88	8	61	23	2	2	72	1.08
11037103--11037186	13	6.3	13	69	17	57	69	3	3	23	1.21
11037207--11037657	123	3.8	120	80	7	494	49	5	6	37	1.53
11037419--11037635	114	1.9	113	86	6	314	47	6	7	37	1.58
11041732--11041768	16	2.2	17	90	4	58	72	13	0	13	1.11
11041827--11041853	6	4.5	6	100	0	54	70	29	0	0	0.88
11042396--11042451	22	2.4	23	85	8	78	14	8	1	75	1.13
11042543--11042954	122	3.5	119	83	9	501	50	5	6	37	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11042751--11042963	111	1.9	113	89	7	337	50	6	4	38	1.49
11044462--11044500	19	2.0	20	90	5	62	53	5	10	30	1.56
11046147--11047948	161	11.3	161	79	5	1542	41	14	10	33	1.79
11046147--11047927	320	5.6	319	82	4	1818	41	14	10	33	1.79
11052441--11052470	6	5.0	6	91	0	51	3	16	13	66	1.37
11053456--11053847	143	2.7	143	80	5	391	42	11	14	32	1.81
11054092--11054129	3	12.7	3	100	0	76	31	0	0	68	0.90
11054160--11054337	67	2.6	68	90	5	263	39	17	11	31	1.86
11054326--11054377	19	2.7	19	100	0	104	34	21	13	30	1.92
11054196--11054671	165	2.8	165	88	3	668	37	16	14	31	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117