genome.fa.s90.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  89  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17226523--17226600	21	3.6	21	81	10	77	76	0	17	5	0.96
17226516--17226596	17	4.9	17	72	18	64	74	0	19	6	1.03
17226554--17226605	17	3.1	17	80	5	52	75	0	21	3	0.97
17227847--17228103	42	6.1	41	92	2	388	24	17	23	34	1.96
17227847--17228103	83	3.1	83	91	2	399	24	17	23	34	1.96
17227847--17228103	125	2.0	126	93	2	437	24	17	23	34	1.96
17228110--17228173	1	64.0	1	74	0	56	87	7	0	4	0.66
17228111--17228164	15	3.5	15	87	7	72	87	7	0	5	0.68
17228382--17228524	21	6.7	20	71	26	75	30	2	2	65	1.16
17228480--17228523	16	2.6	16	85	7	52	34	0	0	65	0.93
17229562--17229601	17	2.4	16	84	8	53	22	5	0	72	1.04
17229588--17229645	14	4.2	14	80	8	66	15	6	1	75	1.09
17229589--17229643	29	2.0	27	82	13	67	16	7	1	74	1.12
17231159--17231211	26	2.0	26	92	0	88	28	28	18	24	1.98
17231960--17232012	26	2.0	26	92	0	88	30	26	16	26	1.97
17233290--17233341	26	2.0	25	92	3	86	28	23	19	28	1.98
17234007--17234376	161	2.3	159	84	3	465	20	28	28	22	1.98
17235629--17235681	26	2.0	26	92	0	88	28	22	16	32	1.96
17238332--17238384	26	2.0	26	92	0	88	26	22	20	30	1.98
17235397--17248231	904	14.3	902	84	4	15508	25	24	24	25	2.00
17241941--17241993	26	2.0	26	92	0	88	30	26	16	26	1.97
17242841--17242892	26	2.0	26	88	3	79	28	25	19	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17243733--17243785	26	2.0	26	96	0	97	26	24	20	28	1.99
17245523--17245575	26	2.0	26	92	0	88	28	24	20	26	1.99
17247301--17247353	26	2.0	26	100	0	106	26	26	20	26	1.99
17248179--17248255	26	3.0	26	94	0	136	25	27	19	27	1.99
17248998--17249050	26	2.0	26	96	0	97	26	24	20	28	1.99
17248878--17250161	643	2.0	643	87	1	1858	26	22	25	26	2.00
17251428--17251480	26	2.0	26	92	0	88	28	24	18	28	1.98
17252321--17252373	26	2.0	26	92	0	88	28	28	16	26	1.97
17249521--17254511	896	5.6	900	86	3	6655	25	24	25	25	2.00
17253213--17253263	26	2.0	26	96	0	93	27	27	17	27	1.98
17254731--17254783	26	2.0	26	92	0	88	30	26	16	26	1.97
17259615--17259667	26	2.0	26	92	0	88	32	20	18	28	1.97
17259104--17262980	894	4.3	894	86	3	5127	26	24	23	25	2.00
17261414--17261466	26	2.0	26	96	0	97	28	26	16	28	1.97
17262294--17262346	26	2.0	26	96	0	97	28	26	18	26	1.98
17263021--17263073	26	2.0	26	92	0	88	26	26	18	28	1.98
17262263--17263693	713	2.0	714	90	3	2237	27	23	22	26	2.00
17263904--17263956	26	2.0	26	92	0	88	28	20	22	28	1.99
17264808--17264860	26	2.0	26	92	0	88	26	22	22	28	1.99
17262951--17279152	904	18.2	903	86	3	20649	25	25	24	25	2.00
17267482--17267534	26	2.0	26	88	0	79	26	24	20	28	1.99
17268385--17268437	26	2.0	26	96	0	97	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17271008--17271060	26	2.0	26	100	0	106	26	26	20	26	1.99
17271890--17271942	26	2.0	26	100	0	106	26	26	20	26	1.99
17272793--17272845	26	2.0	26	92	0	88	28	24	18	28	1.98
17270569--17279152	882	9.6	903	86	2	11155	25	25	24	24	2.00
17273690--17273742	26	2.0	26	96	0	97	26	28	20	24	1.99
17274576--17274628	26	2.0	26	88	0	79	28	24	20	26	1.99
17276338--17276390	26	2.0	26	96	0	97	26	28	20	24	1.99
17277240--17277292	26	2.0	26	88	0	79	28	26	18	26	1.98
17278147--17278199	26	2.0	26	96	0	97	28	24	20	26	1.99
17279053--17279103	26	2.0	26	92	0	84	31	23	17	27	1.97
17279607--17279657	26	2.0	26	100	0	102	27	23	19	29	1.98
17279633--17283782	883	4.7	870	85	5	5316	26	24	23	25	2.00
17283150--17283202	26	2.0	26	88	0	79	30	20	20	28	1.98
17283851--17283903	26	2.0	26	85	7	72	28	24	18	28	1.98
17283091--17284472	690	2.0	698	87	3	2011	28	23	23	25	2.00
17285430--17285479	26	1.9	26	95	0	91	30	28	14	28	1.95
17284682--17286538	685	2.7	690	94	1	3161	26	23	23	26	2.00
17286115--17286164	26	1.9	26	95	0	91	30	28	14	28	1.95
17287773--17287823	26	2.0	26	92	0	84	31	23	17	27	1.97
17288504--17288842	159	2.1	158	83	4	405	22	28	28	20	1.99
17289676--17289728	26	2.0	26	85	7	72	28	28	16	26	1.97
17291439--17291491	26	2.0	26	96	0	97	26	24	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17291504--17291583	40	2.0	40	100	0	160	15	25	40	20	1.90
17294458--17294510	26	2.0	26	96	0	97	30	24	16	28	1.97
17291783--17295169	899	3.8	893	84	5	4181	26	25	23	25	2.00
17295960--17296010	26	2.0	26	96	0	93	31	27	15	25	1.96
17296856--17296908	26	2.0	26	96	0	97	28	26	18	26	1.98
17295177--17297516	898	2.6	895	88	2	3337	26	24	23	25	2.00
17298592--17298644	26	2.0	26	100	0	106	26	26	20	26	1.99
17301235--17301287	26	2.0	26	88	0	79	28	26	18	26	1.98
17308433--17308485	26	2.0	26	89	7	81	30	24	18	26	1.98
17310133--17310184	26	2.0	26	96	0	95	26	28	19	25	1.98
17312825--17312877	26	2.0	26	92	0	88	26	26	18	28	1.98
17309683--17313159	900	3.9	898	87	1	4952	24	25	24	25	2.00
17314454--17314530	26	3.0	26	98	0	145	25	25	19	28	1.99
17313155--17317365	903	4.7	900	85	3	5691	25	24	24	25	2.00
17316280--17316331	26	2.0	26	92	0	86	26	26	19	26	1.99
17317172--17317222	26	2.0	26	92	0	84	25	23	19	31	1.98
17317982--17318034	26	2.0	26	92	0	88	28	24	22	24	2.00
17318869--17318918	26	1.9	26	91	0	82	30	28	14	28	1.95
17317377--17323192	886	6.5	888	87	3	7511	25	24	23	25	2.00
17319749--17319806	26	2.2	26	96	3	107	27	25	20	25	1.99
17321519--17321570	25	2.0	26	88	3	79	26	26	17	28	1.97
17320639--17323192	899	2.8	898	92	2	3638	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17322418--17322469	25	2.0	26	88	3	79	26	26	17	28	1.97
17323166--17323218	26	2.0	26	88	0	79	26	24	22	26	2.00
17324941--17324993	26	2.0	26	92	0	88	30	24	18	26	1.98
17328677--17328729	26	2.0	26	88	0	79	22	22	28	26	1.99
17329574--17329626	26	2.0	26	96	0	97	26	18	26	28	1.98
17330462--17330517	26	2.2	26	93	6	96	26	16	26	30	1.96
17331369--17331421	26	2.0	26	88	0	79	26	18	26	28	1.98
17332274--17332326	26	2.0	26	96	0	97	26	22	24	26	2.00
17335806--17335858	26	2.0	26	96	0	97	26	18	26	28	1.98
17336700--17336751	26	2.0	26	92	0	86	30	19	23	26	1.98
17327709--17341423	904	15.4	902	85	4	16872	25	24	25	25	2.00
17337607--17337656	25	2.0	25	100	0	100	28	20	28	24	1.99
17338510--17338562	26	2.0	26	100	0	106	22	20	30	26	1.98
17340291--17340340	26	1.9	26	95	0	91	32	22	22	24	1.98
17341480--17341532	26	2.0	26	100	0	106	26	20	26	26	1.99
17345881--17345933	26	2.0	26	88	0	79	30	22	20	26	1.98
17347650--17347702	26	2.0	26	100	0	106	26	20	26	26	1.99
17350134--17350189	26	2.2	26	96	0	103	28	19	23	28	1.98
17347683--17351283	902	4.1	882	85	5	4620	24	24	25	25	2.00
17351603--17351655	26	2.0	26	92	0	88	26	20	26	26	1.99
17352499--17352551	26	2.0	26	96	0	97	28	18	26	26	1.98
17351285--17353475	899	2.5	892	86	3	2967	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17353400--17353451	26	2.0	26	100	0	104	26	19	26	26	1.99
17353489--17363691	879	11.6	878	84	6	12051	25	24	24	25	2.00
17357478--17357533	26	2.2	26	93	0	94	25	17	26	30	1.97
17359150--17359179	11	2.7	11	89	0	51	10	30	43	16	1.81
17359259--17359310	26	2.0	26	96	0	95	26	17	26	28	1.97
17362925--17364376	717	2.0	706	87	3	2094	25	23	23	27	2.00
17364350--17364402	26	2.0	26	89	7	81	26	16	26	30	1.97
17366072--17366124	26	2.0	26	88	0	79	24	18	26	30	1.98
17366745--17366797	26	2.0	26	92	0	88	26	16	26	30	1.97
17367556--17367634	26	3.0	26	92	0	131	27	17	27	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117