genome.fa.s90.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  18  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5289819--5289861	21	2.1	20	82	4	50	23	4	37	34	1.76
5293414--5293515	34	2.9	34	81	7	98	48	11	4	35	1.61
5293414--5293518	18	5.9	18	76	10	101	47	11	4	36	1.61
5293592--5293687	19	5.4	17	73	20	72	53	13	5	28	1.61
5293592--5293687	36	2.7	36	78	15	110	53	13	5	28	1.61
5293639--5293694	19	3.1	18	82	10	69	55	12	5	26	1.58
5293816--5293860	22	2.0	23	86	4	65	64	8	2	24	1.34
5293786--5294002	55	3.9	54	86	4	267	56	8	4	30	1.49
5293800--5294001	110	1.8	110	90	2	325	56	8	3	30	1.48
5293926--5294085	20	7.4	22	67	14	91	55	8	6	30	1.55
5293948--5294033	32	2.7	32	90	1	127	54	9	6	29	1.58
5293901--5294002	20	5.3	20	68	21	58	55	7	4	31	1.50
5293800--5294061	110	2.4	111	84	6	322	56	9	4	30	1.51
5294964--5295660	42	15.6	43	70	13	300	40	18	12	29	1.87
5294964--5295316	44	8.2	43	76	8	299	38	18	12	30	1.88
5294958--5295292	87	3.9	86	77	6	309	40	17	12	29	1.87
5295324--5295658	43	7.8	43	77	8	272	42	17	13	27	1.86
5295135--5295490	193	1.8	196	85	4	506	39	18	13	28	1.89
5295389--5295659	133	2.0	133	83	6	336	42	16	12	28	1.84
5297093--5297131	21	1.9	20	89	5	60	0	12	7	79	0.93
5303009--5303083	34	2.2	33	81	11	91	46	9	5	38	1.59
5303020--5303083	16	4.1	16	77	15	71	45	9	6	39	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5303314--5303402	31	2.8	32	83	5	110	55	6	7	30	1.55
5303381--5303425	22	2.0	23	86	4	65	60	6	4	28	1.42
5303348--5303478	55	2.4	54	83	5	165	53	9	6	30	1.58
5306780--5306901	59	2.1	58	92	1	208	27	8	4	59	1.47
5318715--5318932	43	5.1	43	81	4	192	27	13	14	44	1.82
5318728--5318932	85	2.4	86	85	2	270	27	13	14	44	1.83
5318938--5319059	44	2.8	44	84	10	137	27	10	16	45	1.80
5319935--5319975	18	2.3	18	87	8	57	53	0	2	43	1.13
5319940--5319982	18	2.3	19	80	8	52	60	2	2	34	1.22
5320650--5320817	90	1.9	89	81	7	205	37	10	8	44	1.68
5323644--5323677	11	3.0	11	91	4	50	58	0	0	41	0.98
5323985--5324013	14	2.1	14	100	0	58	34	6	20	37	1.80
5324869--5324918	18	2.8	18	82	8	57	40	4	4	52	1.39
5325578--5325625	21	2.2	22	85	3	62	35	18	10	35	1.85
5330491--5330539	23	2.1	23	92	0	80	40	0	0	59	0.98
5341549--5341581	12	2.6	13	90	9	59	6	33	33	27	1.81
5342489--5342534	6	7.7	6	83	7	58	84	0	13	2	0.71
5342486--5342534	25	1.9	24	88	12	71	83	0	14	2	0.73
5342500--5342532	9	3.6	9	92	8	57	87	0	12	0	0.53
5342724--5342925	46	4.4	45	82	9	232	40	23	9	26	1.86
5342755--5342927	92	1.9	91	89	7	269	41	23	8	27	1.83
5343402--5343661	75	3.4	75	79	4	236	32	16	24	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5352278--5352326	23	2.1	23	92	0	80	59	0	0	40	0.98
5355535--5355572	18	2.2	18	85	4	51	63	2	7	26	1.35
5357192--5357239	21	2.2	22	88	3	71	35	10	16	37	1.83
5357897--5357942	18	2.4	18	85	7	56	50	4	4	41	1.42
5359150--5359182	13	2.5	13	90	9	50	30	0	6	63	1.18
5359150--5359188	6	6.2	6	85	11	51	33	0	5	61	1.18
5363587--5363765	75	2.4	74	83	2	214	26	24	16	31	1.96
5369189--5369235	16	2.9	16	75	9	51	40	0	4	55	1.19
5377974--5377998	2	12.5	2	100	0	50	0	48	0	52	1.00
5382062--5382118	22	2.4	25	74	17	66	49	0	5	45	1.24
5382067--5382115	22	2.2	22	92	0	80	44	0	6	48	1.27
5385021--5385104	28	3.1	26	76	11	71	20	1	22	55	1.50
5385064--5385117	28	1.9	28	96	0	99	29	0	20	50	1.49
5385750--5385785	16	2.2	16	90	5	54	66	0	2	30	1.06
5403954--5404014	29	2.1	29	96	0	113	47	19	13	19	1.82
5419450--5419482	17	2.0	17	88	5	50	30	3	9	57	1.45
5420299--5420353	24	2.6	23	81	18	66	47	0	0	52	1.00
5420308--5420365	24	2.3	24	85	11	73	53	0	0	46	1.00
5422980--5423020	2	20.5	2	84	0	55	41	0	0	58	0.98
5422980--5423014	10	3.5	10	92	0	61	42	0	0	57	0.99
5425147--5425187	14	2.9	14	86	10	57	46	0	0	53	1.00
5432198--5432259	16	3.8	16	71	12	63	37	8	11	43	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5442952--5443015	28	2.2	28	83	8	76	42	0	4	53	1.22
5443478--5443502	2	12.5	2	100	0	50	52	0	0	48	1.00
5447526--5447574	23	2.2	21	85	7	62	55	4	4	36	1.38
5447964--5448011	22	2.1	23	84	3	62	54	2	6	37	1.38
5449227--5449264	18	2.1	19	85	5	51	28	0	2	68	1.03
5451273--5451310	2	19.5	2	94	5	69	50	0	0	50	1.00
5454397--5454476	42	1.9	42	94	0	142	51	0	15	33	1.43
5461219--5461263	22	2.1	22	87	4	65	46	0	0	53	1.00
5461292--5461330	19	2.1	18	90	4	60	69	0	0	30	0.89
5466820--5466858	16	2.4	16	83	16	53	20	0	5	74	1.01
5470677--5470701	13	1.9	13	100	0	50	8	28	0	64	1.22
5471617--5471682	34	1.9	34	90	0	105	28	19	10	40	1.85
5472675--5472716	21	2.0	21	100	0	84	19	33	9	38	1.84
5475604--5475638	17	2.1	16	94	5	61	17	8	0	74	1.06
5476061--5476125	6	11.5	6	79	9	57	15	6	0	78	0.94
5476061--5476125	5	11.8	5	81	14	58	15	6	0	78	0.94
5476058--5476125	28	2.4	28	81	13	86	14	7	0	77	0.96
5476060--5476129	22	3.2	22	82	9	81	14	8	0	77	0.99
5476056--5476120	34	1.9	34	87	6	96	15	7	0	76	0.99
5476122--5476823	59	12.1	58	78	8	664	44	5	10	38	1.64
5476149--5476823	58	11.6	57	79	10	647	44	5	11	38	1.65
5476149--5476823	117	5.8	115	84	7	848	44	5	11	38	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5477962--5478002	2	21.5	2	87	9	59	51	2	0	46	1.14
5479736--5479779	22	2.0	23	81	4	54	47	4	0	47	1.22
5480370--5480429	21	2.7	22	82	15	70	40	0	5	55	1.22
5481717--5481764	23	2.2	20	85	10	60	56	0	0	43	0.99
5482834--5482878	23	2.0	22	86	4	63	64	0	6	28	1.19
5485932--5485976	23	2.0	23	95	0	81	48	2	4	44	1.35
5485918--5486006	25	3.6	25	82	11	94	52	1	4	41	1.29
5485918--5486016	25	3.9	26	81	11	82	52	1	4	42	1.27
5487103--5487165	29	2.1	29	82	2	72	30	6	3	60	1.37
5492853--5492906	22	2.5	22	80	14	67	55	0	1	42	1.10
5497199--5497246	4	12.0	4	100	0	96	50	25	0	25	1.50
5502084--5502112	2	14.5	2	100	0	58	0	0	48	51	1.00
5509623--5509677	29	2.0	27	82	13	67	58	0	9	32	1.30
5514129--5514161	16	2.1	16	94	0	57	54	0	0	45	0.99
5514119--5514163	19	2.4	18	82	10	54	48	0	2	48	1.13
5514471--5514515	23	2.0	23	86	8	65	48	8	0	42	1.34
5515628--5515674	19	2.4	21	82	13	64	31	6	0	61	1.21
5515970--5516011	2	21.5	2	95	4	77	50	0	0	50	1.00
5518100--5518129	16	1.9	15	93	6	51	53	0	3	43	1.17
5518252--5518291	13	3.1	13	92	7	64	22	0	0	77	0.77
5518249--5518290	7	6.3	7	89	10	70	26	0	0	73	0.83
5518249--5518290	20	2.1	20	100	0	84	26	0	0	73	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5530254--5530536	20	13.9	20	69	15	170	52	10	4	32	1.57
5530252--5530514	41	6.5	41	83	6	220	52	11	4	31	1.58
5530252--5530424	83	2.1	82	84	3	222	53	10	5	31	1.57
5530253--5530506	62	4.2	59	75	11	208	51	11	5	32	1.59
5530335--5530523	99	1.9	101	90	2	301	52	12	4	30	1.59
5531164--5531195	17	1.9	17	93	6	57	6	12	0	81	0.87
5532971--5533018	16	2.8	17	81	9	53	50	2	2	45	1.25
5533468--5533516	20	2.5	20	93	0	80	46	2	0	51	1.12
5533453--5533524	32	2.6	26	72	20	65	47	1	0	51	1.09
5533681--5533706	2	13.0	2	100	0	52	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117