genome.fa.s90.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  85  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16684303--16702969	876	20.7	892	75	11	13261	25	24	24	25	2.00
16687817--16687869	26	2.0	26	92	0	88	28	24	18	28	1.98
16689591--16689643	26	2.0	26	88	0	79	28	22	18	30	1.98
16690333--16690411	26	3.0	26	94	0	131	27	22	20	29	1.98
16691657--16692347	361	1.9	359	90	1	1107	33	23	18	25	1.97
16692553--16703049	891	11.8	896	85	5	12898	25	25	24	25	2.00
16694314--16694366	26	2.0	26	96	0	97	28	26	18	26	1.98
16697858--16697910	26	2.0	26	100	0	106	26	26	20	26	1.99
16698760--16698812	26	2.0	26	96	0	97	26	24	20	28	1.99
16699632--16699687	26	2.2	26	93	0	94	30	23	19	26	1.98
16703800--16703849	26	1.9	26	91	0	82	26	20	20	34	1.96
16704699--16704750	26	2.0	26	96	0	95	28	26	17	26	1.97
16705581--16705633	26	2.0	26	100	0	106	26	26	20	26	1.99
16706476--16706527	26	2.0	25	92	3	86	26	26	17	28	1.97
16703054--16707404	883	4.9	891	86	3	5677	25	24	24	25	2.00
16708508--16708560	26	2.0	26	100	0	106	26	26	20	26	1.99
16707537--16710533	893	3.3	892	85	1	3982	25	24	24	25	2.00
16710295--16710346	26	2.0	26	88	0	77	28	23	19	28	1.98
16711423--16711472	26	1.9	26	84	8	66	22	20	26	32	1.98
16714957--16715009	26	2.0	26	96	0	97	26	20	20	32	1.98
16713197--16720256	898	7.9	897	86	3	9143	26	24	23	25	2.00
16716738--16716795	26	2.2	26	93	3	98	27	20	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16717632--16717682	26	2.0	26	96	0	93	27	27	17	27	1.98
16718530--16718582	26	2.0	26	100	0	106	26	26	20	26	1.99
16720455--16720507	26	2.0	26	92	0	88	26	22	20	30	1.98
16721352--16721404	26	2.0	26	96	0	97	28	24	20	26	1.99
16725954--16726031	26	3.0	26	92	1	122	26	23	20	29	1.99
16724299--16726666	917	2.6	895	86	3	3172	26	23	23	26	2.00
16727710--16727762	26	2.0	26	92	0	88	26	22	20	30	1.98
16728253--16728302	26	1.9	26	91	0	82	26	24	20	30	1.98
16729981--16730033	26	2.0	26	88	0	79	26	24	22	26	2.00
16732646--16732698	26	2.0	26	96	0	97	26	26	22	24	2.00
16733523--16733575	26	2.0	26	96	0	97	28	20	20	30	1.98
16727897--16735394	877	8.5	879	84	5	8892	25	25	24	24	2.00
16734411--16734462	26	2.0	26	96	0	95	26	25	19	28	1.98
16735160--16735530	185	2.0	185	87	1	528	22	29	26	21	1.99
16736178--16736230	26	2.0	26	88	0	79	28	30	16	24	1.97
16737068--16737118	26	2.0	26	92	0	84	27	29	15	27	1.96
16737770--16737799	4	7.5	4	92	0	51	0	70	26	3	1.03
16740641--16740693	26	2.0	26	92	0	88	28	24	18	28	1.98
16743240--16743292	26	2.0	26	96	0	97	26	26	22	24	2.00
16741649--16747625	902	6.7	899	84	5	7431	25	25	23	25	2.00
16744128--16744180	26	2.0	26	88	0	79	28	26	18	26	1.98
16745031--16745086	26	2.2	26	93	0	94	30	21	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16745925--16745980	26	2.2	26	96	0	103	28	23	19	28	1.98
16746782--16746834	26	2.0	26	96	0	97	26	24	20	28	1.99
16745832--16747535	855	2.0	854	90	1	2678	25	25	24	24	2.00
16746965--16749747	702	4.0	698	80	8	3276	26	24	23	25	2.00
16749793--16749845	26	2.0	26	92	0	88	30	26	16	26	1.97
16750689--16750749	26	2.4	26	94	5	108	26	24	22	26	2.00
16751580--16751632	26	2.0	26	92	0	88	24	26	20	28	1.99
16752486--16752536	26	2.0	26	96	0	93	25	25	19	29	1.99
16753187--16753220	4	8.5	4	86	0	50	0	67	26	5	1.13
16755137--16755189	26	2.0	26	96	0	97	24	26	22	26	2.00
16756889--16756941	26	2.0	26	92	0	88	30	26	16	26	1.97
16756034--16760851	892	5.5	892	85	4	6342	25	25	23	25	2.00
16760419--16760471	26	2.0	26	96	0	97	26	24	20	28	1.99
16763648--16763700	26	2.0	26	88	0	79	26	20	22	30	1.98
16761036--16775456	902	16.1	896	85	4	17445	25	24	24	25	2.00
16768111--16768163	26	2.0	26	88	0	79	26	24	20	28	1.99
16769004--16769055	26	2.0	26	96	0	95	28	26	17	26	1.97
16769908--16769960	26	2.0	26	88	0	79	30	24	16	28	1.97
16770805--16770855	26	2.0	26	96	0	93	29	21	19	29	1.98
16772603--16772655	26	2.0	26	88	0	79	28	24	16	30	1.97
16773498--16773550	26	2.0	26	92	0	88	26	26	18	28	1.98
16774398--16774450	26	2.0	26	100	0	106	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16775309--16775361	26	2.0	26	92	0	88	28	24	18	28	1.98
16776365--16776714	175	2.0	175	96	0	646	19	23	36	21	1.95
16777450--16777480	16	1.9	16	93	0	53	74	0	0	25	0.82
16777449--16777596	10	13.9	10	68	20	70	66	2	2	28	1.19
16777541--16777597	4	14.8	4	75	17	50	70	1	1	26	1.07
16777807--16777863	1	57.0	1	75	0	51	0	1	10	87	0.61
16777807--16777863	7	8.6	7	84	9	75	0	1	10	87	0.61
16777870--16778207	41	8.1	41	90	3	484	37	23	15	24	1.93
16779450--16779531	17	4.6	17	76	13	67	7	21	0	70	1.11
16779464--16779524	23	2.5	25	76	7	63	6	21	0	72	1.07
16783870--16783919	25	2.0	25	96	0	91	30	28	14	28	1.95
16784758--16784810	26	2.0	26	92	0	88	28	24	18	28	1.98
16782256--16786923	891	5.3	884	84	6	5758	25	25	23	25	2.00
16787281--16789273	877	2.3	865	87	3	2835	25	24	23	26	2.00
16789438--16789490	26	2.0	26	92	0	88	28	26	20	24	1.99
16791237--16791289	26	2.0	26	88	0	79	24	22	22	30	1.99
16789270--16811090	901	24.4	901	82	6	24389	25	24	24	25	2.00
16792132--16792184	26	2.0	26	88	0	79	26	20	24	28	1.99
16793034--16793086	26	2.0	26	96	0	97	28	26	18	26	1.98
16794797--16794849	26	2.0	26	100	0	106	26	26	20	26	1.99
16795666--16795718	26	2.0	26	100	0	106	26	26	20	26	1.99
16798400--16798451	26	2.0	26	88	7	79	26	25	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16799303--16799355	26	2.0	26	92	0	88	26	22	22	28	1.99
16801097--16801148	26	2.0	26	96	0	95	28	25	19	26	1.98
16797524--16811090	902	15.1	901	85	4	16762	25	24	24	25	2.00
16802877--16802929	26	2.0	26	85	0	70	24	22	20	32	1.98
16803747--16803799	26	2.0	26	88	0	79	26	24	20	28	1.99
16804630--16804681	26	2.0	26	100	0	104	26	26	19	26	1.99
16808225--16808277	26	2.0	26	88	0	79	28	22	18	30	1.98
16809120--16809172	26	2.0	26	92	0	88	26	26	18	28	1.98
16810027--16810076	26	1.9	26	100	0	100	28	26	18	28	1.98
16810930--16810982	26	2.0	26	92	0	88	28	24	18	28	1.98
16811576--16811869	58	5.0	58	87	5	412	35	12	7	44	1.71
16811578--16811866	118	2.4	116	88	6	420	35	13	6	44	1.70
16811876--16811906	14	2.2	14	94	0	53	77	0	6	16	0.97
16811922--16811961	17	2.4	16	84	8	53	72	0	5	22	1.04
16812781--16812826	17	2.5	20	82	13	62	63	2	2	32	1.19
16813111--16813168	1	58.0	1	78	0	62	0	0	10	89	0.48
16813111--16813166	7	8.6	7	84	11	75	0	0	10	89	0.49
16813175--16813328	41	3.7	41	86	5	204	37	24	14	24	1.92
16813175--16813328	82	1.9	83	87	4	231	37	24	14	24	1.92
16814966--16814994	6	4.8	6	100	0	58	68	13	0	17	1.20
16815029--16815265	58	4.0	59	87	5	345	34	12	8	45	1.71
16815273--16815319	14	3.3	14	85	5	58	78	2	8	10	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16815808--16815866	31	1.9	31	82	0	73	33	18	18	28	1.95
16816363--16816414	17	2.9	17	78	18	52	65	1	1	30	1.14
16816363--16816412	16	3.1	16	83	13	50	64	2	2	32	1.16
16818219--16818271	26	2.0	26	92	0	88	24	24	22	28	2.00
16819998--16820050	26	2.0	26	92	0	88	26	26	18	28	1.98
16820876--16820931	26	2.2	26	90	0	85	32	23	16	28	1.96
16820720--16821123	185	2.2	185	85	0	520	23	27	26	22	1.99
16822688--16822740	26	2.0	26	92	0	88	26	26	20	26	1.99
16823582--16823634	26	2.0	26	88	0	79	26	24	20	28	1.99
16816616--16820951	891	4.9	891	83	6	4057	25	25	24	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117