genome.fa.s90.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  28  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7352685--7352726	16	2.6	16	85	7	50	45	0	0	54	0.99
7356872--7356916	21	2.2	20	92	4	72	28	8	0	62	1.25
7357424--7357470	19	2.6	18	80	12	51	38	2	0	59	1.09
7357600--7357636	18	2.0	19	89	5	58	67	2	0	29	1.04
7357627--7357676	26	2.0	23	88	11	73	46	6	2	46	1.39
7359491--7359525	17	2.1	17	89	10	54	25	0	0	74	0.82
7359488--7359526	13	2.9	13	85	14	53	25	0	0	74	0.82
7360815--7360846	17	1.9	16	93	6	55	84	3	0	12	0.74
7361221--7361281	20	2.8	23	72	25	60	59	3	0	37	1.14
7361482--7361536	22	2.3	24	81	12	60	80	5	9	5	1.03
7361502--7361536	18	2.0	18	94	5	63	85	2	11	0	0.69
7361645--7361867	115	1.9	115	92	1	376	45	9	9	35	1.70
7362764--7362819	19	2.9	18	77	15	58	83	0	8	7	0.80
7362764--7362821	13	4.4	12	79	20	55	82	0	10	6	0.83
7367225--7367261	1	37.0	1	100	0	74	0	0	0	100	0.00
7368242--7368285	17	2.6	17	86	10	56	38	0	4	56	1.20
7368227--7368285	16	3.7	16	72	22	52	37	0	3	59	1.14
7368418--7368469	23	2.3	23	80	3	61	7	9	5	76	1.14
7369475--7369532	26	2.3	26	84	3	73	8	13	20	56	1.63
7371615--7371657	21	2.0	21	90	0	68	25	4	6	62	1.40
7378000--7378060	12	5.0	12	71	11	52	16	0	21	62	1.33
7378501--7378552	9	5.1	9	75	24	50	13	1	1	82	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7388633--7388693	12	5.0	12	71	11	52	16	0	21	62	1.33
7388996--7389036	18	2.3	18	91	4	66	9	4	4	80	1.00
7389125--7389204	28	2.8	26	81	12	79	13	6	2	77	1.06
7389143--7389220	38	2.1	38	82	4	95	17	3	2	75	1.07
7397336--7397385	3	16.7	3	91	0	55	68	10	0	22	1.19
7402541--7402588	3	16.0	3	95	0	87	68	0	0	31	0.90
7405403--7405455	21	2.4	23	78	12	65	39	5	13	41	1.68
7407487--7407556	33	2.1	33	89	0	104	25	11	14	48	1.77
7407668--7407724	17	3.4	16	75	15	53	36	8	14	40	1.76
7407678--7407725	17	2.8	18	78	9	55	39	6	12	41	1.68
7407723--7407768	9	5.0	10	77	17	55	39	10	10	39	1.76
7407723--7407768	18	2.5	19	86	10	69	39	10	10	39	1.76
7407781--7407865	21	4.0	22	76	8	86	30	10	12	45	1.76
7411132--7411172	21	2.0	21	85	0	55	34	14	4	46	1.66
7411751--7411783	2	17.5	2	87	12	52	51	0	0	48	1.00
7411841--7411870	2	15.0	2	100	0	60	50	0	0	50	1.00
7411752--7411927	87	2.0	89	96	2	329	33	15	6	44	1.73
7415671--7416119	59	7.7	57	83	9	559	36	12	6	44	1.68
7415671--7416120	58	7.7	57	83	9	570	36	12	6	45	1.68
7415672--7416119	117	3.9	114	86	7	586	35	12	6	45	1.68
7416136--7416221	5	17.6	5	76	20	76	80	2	3	13	0.95
7416135--7416221	29	2.9	30	81	10	106	79	2	4	13	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7417140--7417208	24	2.8	24	74	12	70	68	5	4	21	1.29
7417263--7417342	28	2.9	27	75	14	72	65	2	6	26	1.29
7417327--7417378	12	4.4	12	80	11	63	73	3	0	23	1.00
7417304--7417378	25	3.1	25	83	7	84	68	4	5	22	1.28
7423666--7423716	12	4.2	12	92	0	75	35	3	13	47	1.62
7424527--7424659	51	2.6	52	85	2	189	37	9	13	39	1.78
7429851--7430030	66	2.7	66	77	2	193	18	23	15	42	1.88
7429971--7430119	66	2.3	66	77	6	151	21	22	12	43	1.85
7430230--7430467	87	2.8	86	83	4	300	31	18	13	36	1.90
7430373--7430414	17	2.5	17	88	7	59	33	19	11	35	1.88
7430243--7430467	86	2.6	86	83	4	292	31	18	13	36	1.89
7432316--7432349	17	1.9	18	88	5	52	38	2	2	55	1.30
7433612--7433653	19	2.2	19	91	0	66	26	0	2	71	0.98
7433618--7433651	9	3.7	9	84	7	50	20	0	2	76	0.92
7433666--7433699	15	2.3	15	95	5	61	35	0	5	58	1.22
7434301--7434361	3	20.3	3	100	0	122	32	0	0	67	0.91
7441347--7441396	17	2.8	17	80	17	57	2	16	6	76	1.08
7448483--7448514	10	3.2	10	95	0	55	15	3	0	81	0.82
7453739--7453767	12	2.3	13	94	5	51	24	0	0	75	0.80
7454518--7454543	2	13.0	2	100	0	52	50	0	0	50	1.00
7456807--7456836	2	15.0	2	100	0	60	50	0	0	50	1.00
7457830--7457886	25	2.3	25	90	0	87	42	0	1	56	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7458498--7458532	17	1.9	18	88	11	54	28	0	0	71	0.86
7458449--7458527	24	3.1	26	71	12	74	31	1	0	67	0.99
7458498--7458534	16	2.2	18	90	9	60	29	0	0	70	0.88
7458842--7458899	29	2.0	29	83	6	73	43	3	0	53	1.17
7462929--7462977	20	2.6	19	81	9	55	53	8	2	36	1.43
7462964--7463009	18	2.5	19	75	10	51	54	8	2	34	1.43
7467221--7467270	20	2.6	19	81	6	64	54	16	4	26	1.59
7468172--7468242	19	3.7	19	81	3	79	23	8	21	46	1.78
7468172--7468258	38	2.3	39	84	6	106	22	9	21	45	1.80
7468172--7468251	19	4.2	19	72	12	65	25	8	20	46	1.79
7468274--7468323	13	3.8	13	83	0	73	26	2	10	62	1.38
7468269--7468336	26	2.6	26	88	0	100	26	2	11	58	1.47
7468288--7468392	26	4.2	24	76	4	66	20	4	18	56	1.60
7468333--7468380	13	3.8	13	80	5	53	20	4	22	52	1.64
7468288--7468368	13	6.3	13	76	7	67	22	4	14	58	1.56
7468539--7468585	3	15.7	3	100	0	94	31	0	0	68	0.90
7468749--7468786	16	2.4	16	90	0	58	57	2	7	31	1.41
7469937--7469977	20	2.0	20	86	13	57	34	0	0	65	0.93
7469957--7470027	30	2.4	30	78	0	79	42	0	1	56	1.08
7469994--7470048	21	2.7	21	86	10	78	52	0	0	47	1.00
7469994--7470045	22	2.5	22	90	6	81	51	0	0	48	1.00
7471001--7471083	9	8.4	10	71	19	50	28	2	2	66	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7471021--7471071	27	1.9	26	92	4	84	31	0	1	66	1.03
7471001--7471068	30	2.4	27	81	13	75	29	0	2	67	1.05
7471024--7471071	15	3.1	16	82	11	64	31	0	2	66	1.03
7471888--7471995	33	3.3	33	77	5	103	26	12	19	40	1.88
7471970--7472127	62	2.5	61	79	13	144	30	17	18	33	1.94
7472154--7472236	33	2.5	33	82	1	96	30	18	20	31	1.96
7473457--7473491	16	2.2	16	89	0	52	74	0	2	22	0.95
7474304--7474342	21	2.0	20	85	10	53	69	2	7	20	1.26
7475946--7475991	19	2.4	19	85	3	56	71	2	8	17	1.21
7476982--7477021	20	2.0	20	85	5	53	50	7	5	37	1.53
7480992--7481883	134	6.5	134	75	10	695	51	10	17	21	1.74
7482030--7482255	123	1.8	122	85	4	321	49	8	20	20	1.75
7483268--7483469	86	2.3	86	81	1	217	39	16	13	31	1.87
7484162--7484245	23	3.7	23	77	6	89	33	20	10	35	1.87
7489341--7489379	19	2.0	20	85	5	53	58	15	5	20	1.55
7490387--7490441	28	1.9	29	82	10	69	52	14	5	27	1.63
7491027--7491055	3	9.7	3	100	0	58	34	31	0	34	1.58
7491102--7491143	7	5.9	7	83	5	57	45	11	26	16	1.82
7491086--7491136	14	3.8	14	82	7	61	49	9	23	17	1.77
7493203--7493235	17	1.9	18	88	11	52	36	6	3	54	1.41
7498519--7498547	2	14.5	2	100	0	58	0	0	48	51	1.00
7502158--7502219	23	2.5	25	79	12	65	48	1	0	50	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7502199--7502235	17	2.1	17	95	5	65	56	0	0	43	0.99
7502427--7502454	8	3.5	8	100	0	56	0	10	0	89	0.49
7508467--7508521	23	2.4	23	84	6	67	32	3	0	63	1.12
7508492--7508545	26	2.1	26	82	6	65	31	3	3	61	1.31
7508865--7508915	25	2.1	25	85	3	68	17	1	5	74	1.11
7511155--7511202	2	24.0	2	91	0	69	45	2	4	47	1.33
7513274--7513309	15	2.4	15	85	0	54	61	0	2	36	1.11
7513278--7513321	23	1.9	23	90	0	70	59	0	4	36	1.18
7513832--7513879	23	2.1	23	84	0	60	50	2	4	43	1.33
7532131--7532234	38	2.8	37	89	2	163	55	4	6	32	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117