genome.fa.s90.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  104  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19137595--19137647	26	2.0	26	92	0	88	28	22	22	26	1.99
19141340--19141392	26	2.0	26	100	0	106	26	26	20	26	1.99
19142244--19142296	26	2.0	26	96	0	97	30	20	20	28	1.98
19144892--19144943	25	2.0	26	92	3	88	26	23	21	28	1.99
19145786--19145838	26	2.0	26	96	0	97	28	26	18	26	1.98
19146680--19146732	26	2.0	26	96	0	97	26	24	20	28	1.99
19140467--19151832	894	12.8	891	81	7	12290	25	24	24	25	2.00
19147581--19147633	26	2.0	26	96	0	97	26	24	20	28	1.99
19147755--19151832	858	4.7	857	81	9	4515	26	24	24	25	2.00
19151141--19151193	26	2.0	26	92	7	90	26	24	18	30	1.98
19151568--19151598	13	2.4	13	88	0	53	45	29	6	19	1.75
19151581--19152193	335	1.8	334	89	2	953	32	25	18	23	1.97
19152390--19154558	873	2.5	870	88	5	3145	25	25	24	25	2.00
19154120--19154172	26	2.0	26	88	0	79	32	24	18	24	1.97
19154909--19154961	26	2.0	26	85	0	70	24	22	22	30	1.99
19153770--19155346	789	2.0	789	88	1	2322	23	25	25	25	2.00
19155004--19157897	733	3.9	740	94	1	4796	28	23	22	25	2.00
19158550--19159278	382	1.9	374	85	4	1007	22	27	25	24	2.00
19159264--19159316	26	2.0	26	100	0	106	26	26	20	26	1.99
19160566--19160618	26	2.0	26	100	0	106	26	26	20	26	1.99
19161132--19161912	408	1.9	400	85	3	1055	22	28	24	24	1.99
19161872--19161924	26	2.0	26	92	0	88	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19163645--19163696	26	2.0	26	88	7	79	26	23	15	34	1.94
19166299--19166351	26	2.0	26	92	0	88	26	26	18	28	1.98
19167189--19167241	26	2.0	26	96	0	97	24	26	22	26	2.00
19165542--19168993	890	3.9	888	87	4	4607	25	25	24	24	2.00
19167727--19167769	20	2.2	20	100	0	86	23	25	16	34	1.95
19169809--19169881	26	2.8	26	93	0	128	24	23	19	32	1.97
19170720--19170772	26	2.0	26	100	0	106	26	26	20	26	1.99
19171904--19171955	26	2.0	26	84	0	68	28	26	11	32	1.91
19172776--19172819	22	2.0	22	95	0	79	22	25	22	29	1.99
19171503--19173772	882	2.6	871	85	5	2960	26	24	23	25	2.00
19174140--19174192	26	2.0	26	88	0	79	28	22	18	30	1.98
19174173--19176642	894	2.8	858	86	7	3177	25	24	24	25	2.00
19175892--19175944	26	2.0	26	96	0	97	26	24	20	28	1.99
19175862--19178141	744	3.1	740	88	2	3357	26	23	23	26	2.00
19178274--19178324	26	2.0	26	92	0	84	25	23	19	31	1.98
19177399--19180059	873	3.0	860	85	5	3371	25	24	24	25	2.00
19180033--19180085	26	2.0	26	88	0	79	22	26	18	32	1.97
19180799--19182251	714	2.0	714	87	3	2082	27	23	22	26	1.99
19182380--19182432	26	2.0	26	88	0	79	24	32	15	28	1.95
19183252--19183304	26	2.0	26	96	0	97	24	26	20	28	1.99
19181504--19187602	891	6.8	902	85	4	7745	25	24	24	25	2.00
19185069--19185141	27	2.7	27	97	2	139	26	26	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19183252--19186898	908	4.0	922	86	5	4755	25	25	24	25	2.00
19185989--19186044	26	2.2	26	83	0	67	32	19	19	28	1.97
19187575--19187625	26	2.0	26	88	0	75	25	25	21	27	1.99
19188080--19188130	26	2.0	26	96	0	93	21	25	25	27	1.99
19188968--19189020	26	2.0	26	88	0	79	32	26	16	24	1.97
19190716--19190768	26	2.0	26	100	0	106	33	26	13	26	1.93
19192343--19198134	884	6.6	881	79	9	5929	25	24	23	25	2.00
19194168--19194220	26	2.0	26	96	0	97	28	26	18	26	1.98
19196766--19196818	26	2.0	26	92	0	88	26	22	20	30	1.98
19195718--19202534	878	7.8	876	80	8	7106	25	24	24	25	2.00
19198496--19198548	26	2.0	26	96	0	97	26	24	20	28	1.99
19201080--19201132	26	2.0	26	96	0	97	28	26	18	26	1.98
19199340--19202534	885	3.6	887	88	3	4438	25	23	24	26	2.00
19201967--19202017	26	2.0	26	100	0	102	27	25	19	27	1.99
19205083--19205135	26	2.0	26	92	0	88	26	22	20	30	1.98
19202544--19206759	905	4.7	901	88	2	5928	25	24	24	25	2.00
19210150--19210200	26	2.0	26	100	0	102	25	23	19	31	1.98
19211040--19211095	26	2.2	26	90	0	85	28	23	19	28	1.98
19208526--19212725	881	4.7	890	85	4	5371	25	24	24	25	2.00
19211939--19211991	26	2.0	26	92	0	88	30	26	18	24	1.98
19214439--19214491	26	2.0	26	100	0	106	26	26	20	26	1.99
19215345--19215397	26	2.0	26	92	0	88	26	26	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19217129--19217180	26	2.0	25	89	10	79	30	25	17	26	1.97
19212672--19217635	899	5.5	902	86	3	6606	25	24	24	25	2.00
19218673--19218725	26	2.0	26	96	0	97	26	24	20	28	1.99
19219560--19219612	26	2.0	26	85	7	72	32	24	16	26	1.97
19222226--19222273	25	1.9	25	91	0	78	29	27	18	25	1.98
19217849--19226822	902	10.1	892	84	6	10536	25	25	24	25	2.00
19224013--19224065	26	2.0	26	96	0	97	28	24	20	26	1.99
19224893--19224945	26	2.0	26	88	0	79	28	28	15	28	1.96
19227511--19227563	26	2.0	26	92	0	88	28	24	18	28	1.98
19230148--19230200	25	2.1	26	83	16	67	32	24	15	28	1.95
19228505--19230860	891	2.6	888	84	8	2854	25	24	23	25	2.00
19230889--19230941	26	2.0	26	89	7	81	28	26	18	26	1.98
19231612--19231664	26	2.0	26	96	0	97	28	26	18	26	1.98
19234094--19234146	26	2.0	26	92	0	88	30	22	20	26	1.98
19235839--19235895	26	2.2	26	96	0	105	26	26	19	28	1.99
19236678--19236729	25	2.0	26	96	3	97	25	26	21	26	1.99
19235450--19237111	834	2.0	826	88	1	2439	24	24	24	25	2.00
19239336--19239388	26	2.0	26	92	0	88	28	24	18	28	1.98
19240234--19240286	26	2.0	26	96	0	97	26	28	20	24	1.99
19242015--19242070	26	2.2	26	93	0	94	28	25	17	28	1.98
19242920--19242972	26	2.0	26	100	0	106	26	26	20	26	1.99
19238172--19250524	898	13.8	890	84	5	14659	25	25	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19243810--19243862	26	2.0	26	96	0	97	28	26	18	26	1.98
19244708--19244760	26	2.0	26	96	0	97	26	24	20	28	1.99
19245617--19245669	27	2.0	27	85	7	74	30	26	18	24	1.98
19246521--19246573	26	2.0	26	96	0	97	24	26	20	28	1.99
19249188--19249239	25	2.0	26	96	3	97	26	26	19	26	1.99
19250075--19250127	26	2.0	26	100	0	106	26	26	20	26	1.99
19251343--19251396	27	2.0	26	82	10	65	31	20	18	29	1.96
19250524--19264845	902	16.0	902	82	6	15816	25	24	23	25	2.00
19254948--19254998	26	2.0	26	96	0	93	27	29	15	27	1.96
19255805--19255857	26	2.0	26	100	0	106	26	26	20	26	1.99
19256706--19256758	26	2.0	26	92	0	88	24	24	22	28	2.00
19257602--19257654	26	2.0	26	92	0	88	26	22	20	30	1.98
19258506--19258558	26	2.0	26	92	0	88	28	24	18	28	1.98
19259408--19259460	26	2.0	26	88	0	79	24	22	22	30	1.99
19259256--19259623	185	2.0	185	85	1	495	21	29	26	22	1.99
19261687--19261743	26	2.2	26	81	6	62	61	5	7	26	1.43
19263007--19263059	26	2.1	26	89	3	81	26	22	20	30	1.98
19264794--19264871	26	3.0	25	92	3	120	30	23	17	28	1.97
19265291--19265343	26	2.0	26	96	0	97	26	24	20	28	1.99
19266908--19266960	26	2.0	26	92	0	88	28	24	18	28	1.98
19266033--19269205	901	3.5	899	84	5	4043	25	25	24	24	2.00
19267809--19267861	26	2.0	26	96	0	97	24	26	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19272677--19272729	26	2.0	26	96	0	97	28	22	18	30	1.98
19271033--19274671	890	4.1	898	84	5	4519	25	24	24	25	2.00
19277741--19277793	26	2.0	26	96	0	97	26	24	20	28	1.99
19278645--19278697	26	2.0	26	96	0	97	28	26	18	26	1.98
19275113--19282753	904	8.5	900	85	4	9721	25	25	23	25	2.00
19279543--19279621	26	3.0	26	92	0	131	26	27	17	27	1.98
19282962--19283014	26	2.0	26	92	0	88	26	22	20	30	1.98
19283869--19283921	26	2.0	26	92	0	88	26	26	22	24	2.00
19286558--19286610	26	2.0	26	88	0	79	30	22	18	28	1.98
19282768--19288303	894	6.2	901	84	4	6805	25	25	23	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117