genome.fa.s90.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  105  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19287447--19287497	26	2.0	26	92	0	84	29	23	15	31	1.95
19289086--19289138	26	2.0	26	92	0	88	30	24	18	26	1.98
19288326--19294364	892	6.8	892	85	5	7544	25	24	24	24	2.00
19289979--19290031	26	2.0	26	100	0	106	26	26	20	26	1.99
19290871--19290923	26	2.0	26	92	0	88	28	26	20	24	1.99
19293553--19293605	26	2.0	26	88	0	79	30	24	18	26	1.98
19291768--19294364	905	2.9	887	84	6	3406	25	25	24	24	2.00
19296179--19296406	117	1.9	117	85	3	316	24	29	25	20	1.99
19296447--19296499	26	2.0	26	92	0	88	26	26	18	28	1.98
19297774--19297821	25	1.9	25	82	0	60	56	10	10	22	1.63
19298046--19298098	26	2.0	26	88	0	79	30	28	16	24	1.97
19298945--19298995	26	2.0	26	96	0	93	25	25	19	29	1.99
19298025--19304433	901	7.2	899	85	3	8209	25	24	24	25	2.00
19301631--19301683	26	2.0	26	92	7	90	30	22	20	26	1.98
19302520--19302573	26	2.1	26	92	0	90	25	24	18	31	1.97
19303398--19303450	26	2.0	26	96	0	97	26	28	20	24	1.99
19304291--19304342	26	2.0	25	96	3	95	30	23	17	28	1.97
19303631--19309417	829	6.6	827	79	10	4229	26	24	23	25	2.00
19305120--19305171	26	2.0	25	92	3	86	28	23	19	28	1.98
19307537--19307566	4	7.5	4	92	0	51	0	70	26	3	1.03
19308655--19308705	26	2.0	26	96	0	93	27	27	15	29	1.96
19306864--19309363	908	2.7	906	88	2	3652	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19310116--19310168	26	2.0	26	92	0	88	30	26	18	24	1.98
19311703--19311755	26	2.0	26	92	0	88	28	26	18	26	1.98
19312581--19312633	26	2.0	26	92	0	88	30	22	20	26	1.98
19314327--19314383	26	2.2	26	90	0	87	29	26	15	28	1.96
19316135--19316186	25	2.0	26	96	3	97	25	26	21	26	1.99
19313469--19344430	903	34.0	898	79	8	28936	25	24	24	25	2.00
19317035--19317086	25	2.0	26	88	3	79	26	25	21	26	1.99
19317898--19317950	26	2.0	26	92	0	88	30	26	16	26	1.97
19318800--19318852	26	2.0	26	92	0	88	28	24	18	28	1.98
19319688--19319740	26	2.0	26	92	0	88	28	28	18	24	1.98
19321470--19321522	26	2.0	26	88	0	79	30	26	18	24	1.98
19322382--19322434	26	2.0	26	96	0	97	26	28	20	24	1.99
19323273--19323324	26	2.0	25	88	3	77	28	25	19	26	1.98
19324169--19324221	26	2.0	26	96	0	97	26	24	20	28	1.99
19325067--19325119	26	2.0	26	92	0	88	28	28	18	24	1.98
19325970--19326022	26	2.0	26	96	0	97	26	28	20	24	1.99
19328643--19328695	26	2.0	26	96	0	97	28	26	18	26	1.98
19327772--19329979	889	2.5	888	91	1	3458	25	23	25	25	2.00
19329532--19329581	26	1.9	26	95	0	91	26	26	20	28	1.99
19330793--19330845	26	2.0	26	88	0	79	30	22	18	28	1.98
19333303--19333336	4	8.5	4	93	0	59	0	70	26	2	1.01
19333299--19333336	20	1.9	20	100	0	76	0	68	26	5	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19333517--19333569	26	2.0	26	92	0	88	26	22	22	28	1.99
19335323--19335375	26	2.0	26	96	0	97	26	24	20	28	1.99
19337121--19337173	26	2.0	26	92	0	88	26	22	22	28	1.99
19338021--19338073	26	2.0	26	96	0	97	28	26	18	26	1.98
19338924--19338993	26	2.7	26	97	0	131	25	21	22	30	1.99
19338772--19339165	211	1.9	211	84	3	542	21	26	27	24	1.99
19339918--19339970	26	2.0	26	92	0	88	28	24	20	26	1.99
19342587--19342639	26	2.1	26	89	3	81	26	22	20	30	1.98
19344378--19344456	26	3.0	25	85	10	106	30	24	17	27	1.97
19344878--19344930	26	2.0	26	96	0	97	26	24	20	28	1.99
19346496--19346549	27	2.0	26	89	3	81	27	25	18	27	1.98
19347943--19352147	885	4.8	886	84	5	5229	26	25	23	25	2.00
19352028--19352264	117	2.0	116	86	3	323	21	29	28	20	1.98
19352297--19352349	26	2.0	26	92	0	88	26	26	18	28	1.98
19353831--19355302	723	2.0	722	88	2	2194	26	24	22	26	2.00
19355433--19355483	26	2.0	26	96	0	93	25	25	19	29	1.99
19355995--19356044	26	1.9	26	91	0	82	28	24	18	30	1.97
19356893--19356940	25	1.9	25	91	8	80	25	31	18	25	1.98
19358679--19358731	26	2.0	26	100	0	106	26	26	20	26	1.99
19360420--19360471	26	2.0	25	88	3	77	26	25	21	26	1.99
19361303--19361355	26	2.0	26	92	0	88	26	22	22	28	1.99
19361463--19364691	936	3.5	897	85	3	4106	26	24	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19363958--19364026	26	2.7	26	97	0	129	28	30	13	27	1.94
19364719--19364771	26	2.0	26	92	0	88	28	24	18	28	1.98
19367049--19367101	26	2.0	26	88	0	79	28	24	18	28	1.98
19367935--19367987	26	2.0	26	88	0	79	32	22	18	26	1.97
19366653--19369224	886	3.0	868	83	7	3022	25	24	24	25	2.00
19369577--19369628	25	2.0	26	92	3	88	26	26	19	26	1.99
19370478--19370529	25	2.0	26	92	3	88	26	26	19	26	1.99
19371340--19371392	26	2.0	26	92	0	88	28	24	18	28	1.98
19372444--19372496	26	2.0	26	88	0	79	30	24	16	28	1.97
19373337--19373389	26	2.0	26	96	0	97	26	28	20	24	1.99
19375094--19375146	26	2.0	26	96	0	97	28	26	18	26	1.98
19375803--19375830	4	7.0	4	100	0	56	0	75	25	0	0.81
19376011--19376063	26	2.0	26	92	0	88	26	22	20	30	1.98
19374221--19384190	902	11.1	903	85	3	12780	25	25	23	25	2.00
19377817--19377869	26	2.0	26	92	0	88	28	24	18	28	1.98
19374221--19384190	904	11.1	903	85	2	12799	25	25	23	25	2.00
19378717--19378769	26	2.0	26	92	0	88	26	22	22	28	1.99
19379621--19379673	26	2.0	26	96	0	97	28	28	16	26	1.97
19380516--19380569	26	2.1	26	96	0	99	24	24	22	29	1.99
19381408--19381458	26	2.0	26	96	0	93	27	23	19	29	1.98
19382302--19382354	26	2.0	26	92	0	88	28	24	18	28	1.98
19383203--19383254	26	2.0	26	92	0	86	28	25	17	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19384302--19384354	26	2.0	26	96	0	97	28	26	18	26	1.98
19384032--19384374	184	1.9	185	84	3	467	19	28	27	24	1.99
19385184--19385247	26	2.5	26	89	0	101	26	26	18	28	1.98
19388016--19388068	26	2.0	26	96	0	97	28	26	18	26	1.98
19388655--19388950	58	5.0	57	86	5	385	34	12	7	44	1.71
19388657--19388947	118	2.5	118	89	2	415	35	13	6	45	1.70
19389002--19389041	17	2.4	16	84	15	55	70	0	7	22	1.12
19390076--19390105	9	3.3	9	90	0	51	76	0	0	23	0.78
19390079--19390128	20	2.5	20	87	9	68	68	0	0	32	0.90
19390095--19390159	17	3.8	17	76	21	57	63	3	1	32	1.19
19390170--19390231	27	2.2	27	80	11	72	69	3	1	25	1.13
19390429--19390478	11	4.4	11	83	16	66	0	2	10	88	0.61
19390424--19390470	24	2.0	25	87	8	71	2	4	12	80	0.94
19390436--19390478	17	2.6	16	85	10	59	0	2	9	88	0.60
19390487--19390701	41	5.1	41	92	2	340	34	25	17	22	1.96
19390487--19390701	83	2.6	83	92	3	344	34	25	17	22	1.96
19391952--19391994	17	2.5	17	88	0	59	4	18	0	76	0.95
19391949--19392005	7	7.9	7	79	16	55	3	15	0	80	0.84
19391965--19392006	10	4.1	10	90	6	66	0	14	0	85	0.59
19391973--19392006	11	3.2	11	83	8	52	0	11	0	88	0.52
19391946--19392036	14	6.8	13	70	18	62	5	18	0	75	0.98
19395902--19396188	60	5.0	58	82	9	324	33	12	8	44	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19395902--19396188	59	5.0	58	83	9	333	33	12	8	44	1.73
19396196--19396248	14	3.8	14	78	7	54	77	1	7	13	1.06
19396240--19396279	17	2.4	16	84	15	55	70	0	7	22	1.12
19398235--19398277	20	2.2	20	86	0	59	6	44	30	18	1.76
19398305--19398357	26	2.0	26	92	0	88	30	26	16	26	1.97
19399204--19399256	26	2.0	26	96	0	97	26	20	20	32	1.98
19397560--19406165	897	9.6	899	85	3	10921	26	24	23	25	2.00
19401006--19401058	26	2.0	26	89	7	81	30	22	20	26	1.98
19403674--19403726	26	2.0	26	92	0	88	28	24	20	26	1.99
19403896--19403926	12	2.6	12	94	0	53	19	32	19	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117