genome.fa.s90.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  91  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17503580--17503738	4	40.8	4	69	18	63	27	1	3	66	1.19
17504858--17505091	59	3.9	57	85	10	303	45	7	11	35	1.69
17504858--17505091	60	3.9	58	87	7	330	45	7	11	35	1.69
17508973--17509014	19	2.3	19	88	12	61	73	0	19	7	1.05
17508973--17509060	17	4.9	18	71	20	60	73	0	19	6	1.05
17508982--17509031	10	4.9	10	80	2	55	80	0	16	4	0.87
17510330--17510551	41	5.4	41	94	3	385	23	16	23	36	1.95
17510330--17510551	83	2.7	83	96	2	414	23	16	23	36	1.95
17512709--17513203	271	1.8	270	88	1	758	19	28	29	23	1.98
17513945--17513996	26	2.0	26	96	0	95	28	25	19	26	1.98
17514836--17514888	26	2.0	26	96	0	97	26	24	20	28	1.99
17513072--17517035	865	4.5	892	86	5	5238	25	24	24	25	2.00
17516595--17516646	26	2.0	25	96	3	95	26	23	21	28	1.99
17517274--17517331	26	2.3	25	82	5	73	29	22	17	31	1.96
17517915--17518151	58	4.0	60	87	3	329	34	12	8	44	1.72
17518159--17518216	14	4.2	13	81	12	64	75	1	6	15	1.09
17518203--17518242	17	2.4	16	84	8	53	72	0	5	22	1.04
17519334--17519413	36	2.2	35	80	12	83	67	2	2	27	1.16
17519334--17519415	24	3.4	23	75	20	69	67	2	2	28	1.16
17519626--17519685	1	60.0	1	76	0	57	0	0	11	88	0.52
17519626--17519685	19	3.2	19	86	13	88	0	0	11	88	0.52
17519692--17519988	41	7.1	41	87	3	407	36	23	16	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17519692--17519988	83	3.6	82	90	2	452	36	23	16	23	1.94
17521237--17521296	8	8.0	7	77	15	50	3	18	0	78	0.89
17521253--17521296	11	4.0	11	85	5	54	0	18	0	81	0.68
17521253--17521292	17	2.4	16	91	4	62	0	17	0	82	0.67
17521236--17521314	22	3.6	21	80	10	70	5	17	0	77	0.95
17521282--17521323	19	2.3	18	87	4	57	7	19	0	73	1.05
17521281--17521319	21	1.9	20	89	5	60	7	20	0	71	1.10
17521231--17521323	17	5.6	17	70	21	56	5	20	0	74	1.01
17525183--17525417	58	4.0	59	88	5	359	35	11	7	45	1.68
17525425--17525482	14	4.2	14	76	8	57	77	1	6	13	1.05
17525432--17525482	17	2.9	17	76	21	52	78	1	5	13	1.02
17525469--17525508	17	2.4	16	84	8	53	72	0	5	22	1.04
17526540--17526589	20	2.5	20	90	3	73	70	0	0	30	0.88
17526539--17526688	4	38.8	4	67	18	54	67	3	2	27	1.17
17526558--17526590	17	1.9	17	88	11	50	63	0	0	36	0.95
17527885--17527932	25	1.9	25	87	8	71	29	27	18	25	1.98
17527909--17530088	879	2.5	869	83	8	2688	25	24	24	25	2.00
17529719--17530465	384	1.9	386	90	2	1189	22	22	26	28	1.99
17530102--17532416	902	2.6	895	83	5	2968	26	23	24	25	2.00
17534218--17534270	26	2.0	26	85	0	70	30	28	18	22	1.98
17535987--17536039	26	2.0	26	88	0	79	28	26	16	28	1.97
17533417--17536676	876	3.7	876	82	8	3957	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17537036--17538790	704	2.5	710	82	5	2153	27	24	22	25	2.00
17538853--17538908	26	2.2	26	96	0	103	32	23	17	26	1.97
17539754--17539806	26	2.0	26	100	0	106	26	26	20	26	1.99
17540652--17540703	26	2.0	26	88	0	77	26	28	21	23	1.99
17537979--17542369	897	4.9	895	85	3	5486	26	24	24	25	2.00
17542560--17542612	26	2.0	26	96	0	97	28	20	20	30	1.98
17543455--17543507	26	2.0	26	92	0	88	28	24	18	28	1.98
17544998--17545050	26	2.0	26	81	0	61	32	24	16	26	1.97
17546592--17546670	26	3.0	25	94	3	131	29	26	17	26	1.98
17547929--17547978	26	1.9	26	91	0	82	26	24	20	30	1.98
17548820--17548898	26	3.0	25	92	7	131	29	26	17	26	1.98
17549746--17549798	26	2.0	26	96	0	97	28	26	18	26	1.98
17547740--17550519	900	3.1	898	90	4	4236	25	24	24	25	2.00
17552094--17552165	26	2.8	26	93	0	126	25	26	16	31	1.96
17553896--17553947	26	2.0	26	92	0	86	34	23	15	26	1.94
17551585--17557509	895	6.6	894	84	5	7270	25	24	24	25	2.00
17557458--17557509	26	2.0	26	92	7	88	26	25	21	26	1.99
17556777--17558221	738	2.0	737	87	4	2101	27	25	21	25	1.99
17557511--17560887	866	3.8	887	84	6	4097	25	24	24	25	2.00
17560836--17560887	26	2.0	26	92	7	88	26	25	21	26	1.99
17560155--17561600	738	2.0	738	88	2	2163	27	25	21	25	1.99
17564223--17564282	26	2.4	26	80	5	79	30	26	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17560893--17568892	894	9.0	895	83	6	9581	25	25	23	25	2.00
17566014--17568892	890	3.2	888	85	3	3792	25	24	24	25	2.00
17568051--17569721	829	2.0	833	87	3	2378	24	23	25	25	2.00
17569423--17570109	368	1.9	368	89	1	1065	16	27	30	25	1.97
17571293--17571345	26	2.0	26	100	0	106	26	26	20	26	1.99
17573081--17573133	26	2.0	26	92	0	88	28	24	18	28	1.98
17571198--17574181	903	3.3	903	90	2	4414	25	25	24	24	2.00
17576119--17576171	26	2.0	26	96	0	97	28	26	18	26	1.98
17576703--17576731	6	4.8	6	100	0	58	68	13	0	17	1.20
17576766--17576942	58	3.0	58	87	3	255	37	11	6	44	1.67
17576853--17576882	14	2.1	14	93	0	51	50	0	0	50	1.00
17576957--17577007	17	2.9	17	76	21	52	78	1	5	13	1.02
17577040--17577082	23	1.9	22	85	4	59	81	4	2	11	0.93
17577467--17577507	11	3.7	11	86	0	55	26	26	26	19	1.99
17578079--17578232	21	7.2	21	67	19	79	66	3	1	28	1.15
17578075--17578232	4	38.2	4	66	20	60	67	3	1	28	1.14
17578077--17578142	17	3.9	17	75	18	50	66	1	1	30	1.10
17578079--17578229	7	21.7	7	69	21	70	66	3	1	28	1.15
17578427--17578483	1	57.0	1	75	0	51	1	1	8	87	0.68
17578427--17578480	9	5.9	9	79	16	58	1	1	9	87	0.71
17578446--17578483	16	2.4	16	91	4	60	0	2	7	89	0.57
17578491--17578916	41	10.1	41	87	9	576	34	24	16	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17580180--17580212	14	2.3	15	94	5	59	0	18	0	81	0.68
17583951--17584246	58	5.0	58	86	6	416	34	12	7	45	1.71
17583951--17584243	118	2.5	117	89	5	437	34	12	7	45	1.71
17584254--17584311	14	4.2	14	76	8	57	77	1	6	13	1.05
17584261--17584311	17	2.9	17	76	21	52	78	1	5	13	1.02
17584298--17584337	17	2.4	16	84	8	53	72	0	5	22	1.04
17585302--17585349	3	14.7	3	83	12	51	66	0	0	33	0.92
17585302--17585438	10	13.5	10	66	22	65	66	2	1	29	1.15
17585302--17585448	16	8.9	16	71	20	99	66	3	1	28	1.16
17585316--17585434	21	5.8	21	69	22	74	65	3	1	29	1.18
17585300--17585451	27	5.6	27	69	20	77	67	3	1	28	1.15
17586304--17586356	26	2.0	26	96	0	97	28	26	18	26	1.98
17588103--17588153	26	2.0	26	88	0	75	29	19	21	29	1.98
17590762--17590814	26	2.0	26	100	0	106	26	26	20	26	1.99
17592539--17592591	26	2.0	26	92	0	88	28	24	18	28	1.98
17592552--17593000	232	1.9	230	84	3	589	19	24	32	23	1.98
17593673--17593725	26	2.0	26	89	7	81	26	20	24	28	1.99
17594572--17594622	26	2.0	26	92	0	84	29	23	15	31	1.95
17596349--17596401	26	2.0	26	96	0	97	24	26	22	26	2.00
17592784--17600532	902	8.7	895	83	6	9281	26	24	23	25	2.00
17598086--17598138	26	2.0	26	96	0	97	26	24	20	28	1.99
17599878--17599930	26	2.0	26	89	7	81	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17601427--17601479	26	2.0	26	92	0	88	26	26	20	26	1.99
17601582--17603179	824	1.9	823	87	1	2353	27	25	22	24	2.00
17602405--17607799	898	6.0	903	86	2	7159	26	24	23	25	2.00
17605847--17605899	26	2.0	26	100	0	106	26	26	20	26	1.99
17606752--17606801	26	1.9	26	91	0	82	26	24	20	30	1.98
17607652--17607704	26	2.0	26	92	0	88	28	24	18	28	1.98
17608298--17608534	60	4.0	61	82	6	299	34	13	7	44	1.72
17608298--17608534	59	4.0	59	82	4	298	34	13	7	44	1.72
17608298--17608531	118	2.0	120	88	3	357	34	13	7	44	1.73
17608552--17608659	17	6.4	17	68	14	53	72	4	3	19	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117