genome.fa.s90.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  69  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14780248--14780323	22	3.5	22	82	10	75	44	17	5	32	1.71
14780273--14780323	22	2.3	22	96	0	93	41	19	7	31	1.80
14782374--14782589	112	1.9	112	82	1	272	33	22	17	27	1.96
14784556--14784681	18	6.7	19	76	13	102	47	11	7	33	1.68
14784556--14784681	55	2.2	56	86	6	175	47	11	7	33	1.68
14784592--14784681	38	2.4	36	78	14	92	48	11	6	33	1.65
14784666--14784748	26	3.1	26	75	18	73	54	9	6	30	1.57
14785049--14785218	32	5.4	32	73	10	163	50	10	7	31	1.65
14785105--14785163	28	2.1	28	90	0	91	52	13	6	27	1.65
14785034--14785230	64	3.2	59	87	7	252	50	11	7	30	1.65
14785034--14785230	60	3.2	62	86	7	276	50	11	7	30	1.65
14785218--14785304	21	4.2	21	71	12	72	56	10	6	26	1.58
14785034--14785304	64	4.3	63	80	8	229	52	10	7	29	1.63
14785290--14785402	20	5.8	19	72	13	70	55	7	4	31	1.49
14785197--14785315	62	1.9	61	85	0	157	55	9	7	27	1.58
14785228--14785402	81	2.2	81	83	4	212	56	8	5	29	1.53
14786226--14786297	6	12.3	6	80	5	67	65	5	2	26	1.28
14786232--14786291	23	2.6	23	81	2	75	66	5	1	26	1.21
14786226--14786297	29	2.5	29	81	0	90	65	5	2	26	1.28
14786554--14786760	43	4.8	42	81	9	188	41	17	13	28	1.87
14786563--14786752	86	2.2	87	83	3	249	40	17	12	28	1.87
14786551--14786774	86	2.6	85	79	5	245	40	19	12	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14786595--14786801	43	4.8	43	81	5	215	41	18	12	27	1.87
14786973--14786997	13	1.9	13	100	0	50	40	12	24	24	1.88
14797295--14797335	21	2.0	21	90	0	64	56	2	9	31	1.45
14798261--14798313	25	2.1	26	89	3	81	52	15	3	28	1.59
14798371--14798496	18	6.7	20	71	12	88	49	11	5	34	1.62
14798371--14798496	55	2.2	57	87	4	184	49	11	5	34	1.62
14798830--14798874	17	2.7	17	82	3	56	46	15	11	26	1.79
14798882--14798990	32	3.4	32	74	9	114	49	9	6	34	1.60
14798862--14799010	64	2.3	63	90	2	235	51	9	6	33	1.59
14798972--14799245	21	13.1	22	68	15	129	55	9	5	30	1.54
14798972--14799262	41	7.1	41	72	12	199	54	9	5	30	1.54
14798969--14799146	64	2.8	62	89	3	275	55	11	5	28	1.56
14799106--14799266	19	8.2	19	67	21	75	55	6	4	32	1.48
14799075--14799235	81	2.0	81	86	2	225	55	7	5	31	1.50
14800524--14800574	11	4.5	11	87	4	75	62	5	1	29	1.29
14800510--14800574	22	2.9	22	81	6	69	64	7	1	26	1.29
14800531--14800576	6	8.0	6	80	9	51	63	4	2	30	1.26
14800835--14800864	2	15.5	2	93	6	53	50	0	0	50	1.00
14802671--14802709	17	2.4	17	86	4	62	51	0	2	46	1.14
14802813--14802873	19	3.4	19	73	13	58	44	0	0	55	0.99
14802838--14802882	18	2.3	20	85	11	58	53	2	0	44	1.13
14803421--14803476	12	4.3	12	77	16	58	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14803427--14803476	14	3.7	14	77	17	61	64	0	0	36	0.94
14803861--14803897	10	3.5	11	89	10	60	54	0	5	40	1.24
14807032--14807070	20	2.0	20	94	0	69	7	12	17	61	1.54
14807058--14807097	19	2.0	20	90	4	64	30	12	15	42	1.83
14809215--14809260	13	3.5	13	83	16	60	69	0	2	28	1.00
14811802--14811840	3	13.0	3	100	0	78	66	0	0	33	0.92
14818775--14818843	34	2.0	34	91	0	111	44	11	13	30	1.78
14819154--14819196	21	2.0	21	95	0	77	55	6	18	18	1.64
14819157--14819202	21	2.2	21	88	0	65	60	8	17	13	1.56
14820907--14820971	33	2.0	33	96	0	121	35	13	16	33	1.89
14830978--14831015	7	5.4	7	87	9	51	76	0	0	23	0.79
14832130--14832224	47	2.0	47	89	0	145	16	17	15	49	1.80
14832884--14832926	13	3.3	13	78	12	52	58	13	2	25	1.48
14832862--14832937	12	6.0	13	74	17	54	53	19	5	21	1.64
14832858--14832937	26	3.1	26	81	0	106	55	18	5	21	1.62
14832920--14832956	19	1.9	19	88	0	56	45	27	8	18	1.77
14835481--14835522	17	2.5	17	92	0	66	28	33	9	28	1.88
14842743--14842779	14	2.5	15	86	4	58	89	0	5	5	0.60
14842743--14842778	15	2.6	14	91	8	56	88	0	5	5	0.61
14843274--14843309	12	3.0	12	87	0	54	77	2	11	8	1.08
14843257--14843358	24	4.0	25	73	13	82	73	2	17	5	1.16
14847277--14847318	17	2.5	17	92	0	66	28	33	9	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14854518--14854552	14	2.6	14	90	4	54	85	0	8	5	0.73
14855036--14855071	12	3.0	12	87	0	54	77	2	11	8	1.08
14855019--14855119	24	4.0	25	72	11	80	73	2	17	5	1.16
14855460--14855523	21	3.0	21	79	6	85	79	0	17	3	0.85
14862642--14862680	20	2.0	20	90	10	62	23	17	30	28	1.97
14865669--14865696	1	28.0	1	100	0	56	0	0	0	100	0.00
14866343--14866369	2	13.5	2	100	0	54	48	0	0	51	1.00
14866644--14866694	15	3.4	15	70	20	52	17	0	9	72	1.11
14866636--14866696	30	2.0	30	100	0	122	19	0	13	67	1.23
14868265--14868309	20	2.2	19	81	14	54	44	0	6	48	1.29
14872096--14872123	2	14.0	2	100	0	56	50	0	0	50	1.00
14877868--14878209	188	1.8	187	89	1	533	34	10	14	40	1.81
14879374--14879424	26	1.9	26	88	4	75	41	0	7	50	1.31
14880492--14880531	19	2.0	20	86	13	57	47	0	7	45	1.31
14881644--14881682	6	6.5	6	100	0	78	0	33	17	48	1.48
14883937--14883998	24	2.6	24	84	0	79	17	32	11	38	1.85
14889387--14889517	37	3.4	36	68	15	93	51	3	4	41	1.38
14895672--14895956	145	2.0	145	89	4	441	38	17	18	24	1.93
14898385--14898440	24	2.2	24	87	6	76	32	5	12	50	1.63
14898402--14898451	24	2.1	24	92	0	82	28	4	14	54	1.58
14898434--14898478	18	2.4	19	88	7	65	28	0	13	57	1.36
14904632--14904680	27	1.9	27	88	12	77	69	2	24	4	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14906088--14906137	18	2.7	18	81	3	64	34	20	6	40	1.77
14906413--14906546	43	3.1	43	79	5	155	31	17	13	38	1.88
14906550--14906681	43	3.0	43	87	5	176	32	17	12	37	1.88
14906480--14906617	71	1.9	71	85	2	188	32	18	13	34	1.90
14906430--14906640	114	1.8	115	89	3	336	31	17	13	37	1.88
14907355--14907544	88	2.2	88	94	1	330	16	1	29	53	1.50
14907953--14908008	28	2.1	27	83	12	71	19	7	0	73	1.06
14907959--14908008	13	3.6	14	78	10	50	22	6	0	72	1.07
14907959--14908030	20	3.5	20	75	16	60	22	4	1	72	1.10
14907971--14908036	28	2.4	28	82	5	71	21	3	1	74	1.04
14908146--14908195	18	2.6	20	81	9	59	26	2	16	56	1.51
14915174--14915233	27	2.3	26	88	8	86	55	0	13	31	1.39
14929633--14929685	20	2.7	20	85	2	72	22	5	24	47	1.73
14929950--14930016	24	2.7	24	75	13	64	29	4	0	65	1.12
14930193--14930231	3	13.0	3	100	0	78	33	0	0	66	0.92
14930361--14930416	3	19.0	3	92	3	96	30	0	1	67	1.01
14937514--14937548	17	2.1	17	100	0	70	11	11	22	54	1.68
14947099--14947142	22	2.0	22	91	4	72	75	0	25	0	0.81
14947320--14947363	22	2.0	22	95	0	79	31	11	13	43	1.80
14951218--14951261	22	2.0	22	90	0	70	31	11	11	45	1.76
14953837--14953870	2	17.5	2	93	6	61	50	0	0	50	1.00
14955588--14955636	16	2.9	17	84	9	64	55	8	10	26	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14964541--14964575	2	17.5	2	100	0	70	0	48	0	51	1.00
14971829--14971853	7	3.6	7	100	0	50	16	0	0	84	0.63
14973052--14973106	16	3.5	16	85	2	76	25	3	21	49	1.66
14973076--14973133	23	2.5	22	73	15	55	29	1	17	51	1.55
14973052--14973112	31	1.9	32	93	3	106	24	3	21	50	1.63
14973052--14973119	16	4.4	15	77	5	64	25	2	20	51	1.61
14973052--14973125	31	2.4	31	86	4	87	25	2	20	51	1.60
14973171--14973232	8	7.4	8	81	13	54	16	0	30	53	1.43
14973181--14973232	25	2.0	27	82	10	65	17	0	30	51	1.45
14973610--14973642	16	2.1	16	100	0	66	24	0	6	69	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117