genome.fa.s90.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  81  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16108765--16108800	12	2.9	12	95	4	63	13	27	16	41	1.87
16109438--16109488	26	2.0	26	100	0	102	27	25	19	27	1.99
16110338--16110415	26	3.0	26	96	0	147	29	26	16	26	1.97
16110390--16116044	904	6.4	873	83	5	6693	25	24	24	25	2.00
16112145--16112194	26	1.9	26	95	0	91	26	28	18	28	1.98
16113534--16113575	18	2.2	20	87	8	61	64	7	7	21	1.43
16114383--16114439	26	2.2	26	83	0	69	57	14	7	21	1.60
16114807--16114859	26	2.0	26	88	0	79	30	22	18	28	1.98
16115706--16115758	26	2.0	26	96	0	97	28	22	18	30	1.98
16113944--16116044	899	2.4	898	88	3	3041	25	24	24	25	2.00
16116261--16116312	26	2.0	26	96	0	95	28	26	17	26	1.97
16117153--16117205	26	2.0	26	88	0	79	28	24	20	26	1.99
16118053--16118112	26	2.4	26	88	5	88	28	25	18	28	1.98
16118955--16119006	26	2.0	26	92	3	88	28	28	17	25	1.97
16116071--16120602	901	5.1	899	86	3	6023	25	25	24	25	2.00
16120576--16120628	26	2.0	26	96	0	97	28	26	18	26	1.98
16119867--16121347	745	2.0	745	90	2	2310	26	24	22	25	2.00
16121479--16121531	26	2.0	26	85	7	72	28	26	18	26	1.98
16122369--16122421	26	2.0	26	100	0	106	26	26	20	26	1.99
16120552--16124878	901	4.8	902	86	2	5834	25	24	24	25	2.00
16125397--16125449	26	2.0	26	92	0	88	30	26	13	30	1.94
16126285--16126337	26	2.0	26	92	0	88	24	24	22	28	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16125163--16127194	900	2.3	884	87	3	2910	24	25	25	24	2.00
16126453--16127950	756	2.0	758	89	1	2281	26	24	23	24	2.00
16128827--16128879	26	2.0	26	88	0	79	28	24	20	26	1.99
16129726--16129778	26	2.0	26	88	0	79	32	24	16	26	1.97
16127945--16138447	893	11.9	893	79	8	10462	25	24	24	25	2.00
16130584--16130635	26	2.0	25	92	3	86	25	25	23	26	2.00
16131476--16131528	26	2.0	26	92	0	88	28	24	18	28	1.98
16132347--16132398	26	2.0	25	92	3	86	25	25	23	26	2.00
16133240--16133292	26	2.0	26	96	0	97	28	24	20	26	1.99
16134152--16134222	26	2.7	26	84	0	106	26	28	18	26	1.98
16137682--16137734	26	2.0	26	96	0	97	28	26	18	26	1.98
16140056--16140108	26	2.0	26	96	0	97	26	24	20	28	1.99
16139202--16141068	880	2.1	880	91	1	3006	24	24	25	25	2.00
16140936--16140988	26	2.0	26	92	0	88	28	24	18	28	1.98
16141656--16141709	26	2.1	26	92	0	90	25	27	20	25	1.99
16142540--16142592	26	2.0	26	88	0	79	35	24	13	26	1.92
16143425--16143477	26	2.0	26	96	0	97	28	26	18	26	1.98
16141139--16145694	881	5.1	893	84	5	5517	26	24	23	25	2.00
16141686--16145694	897	4.5	872	82	7	4555	26	24	23	25	2.00
16145198--16145250	26	2.0	26	92	0	88	26	22	20	30	1.98
16145753--16145824	26	2.8	26	89	0	108	27	23	19	29	1.98
16147726--16147778	26	2.0	26	92	0	88	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16145798--16149358	884	4.0	884	86	2	4616	25	24	24	25	2.00
16148605--16148662	26	2.2	26	87	3	80	29	22	20	27	1.99
16149796--16149848	26	2.0	26	92	0	88	26	18	20	33	1.96
16151314--16151990	366	1.9	364	90	2	1081	24	23	24	27	2.00
16152450--16152502	26	2.0	26	92	0	88	26	22	20	30	1.98
16153323--16153375	26	2.0	26	85	7	72	26	22	20	30	1.98
16154184--16154236	26	2.0	26	96	0	97	24	26	20	28	1.99
16156800--16156852	26	2.0	26	92	0	88	28	24	18	28	1.98
16158558--16158610	26	2.0	26	92	0	88	26	22	20	30	1.98
16159443--16159495	26	2.0	26	100	0	106	26	26	20	26	1.99
16157691--16162842	902	5.8	890	86	3	6740	26	24	23	25	2.00
16161237--16161287	26	2.0	26	88	7	77	23	25	17	33	1.96
16162854--16165220	900	2.6	886	84	7	2928	26	23	23	26	2.00
16166308--16168363	742	2.8	740	91	1	3216	27	23	22	26	2.00
16168496--16168548	26	2.0	26	96	0	97	28	24	20	26	1.99
16167572--16173899	903	7.1	904	85	3	8089	25	24	24	25	2.00
16170300--16170378	26	3.0	26	86	0	113	29	22	18	29	1.98
16171231--16171281	26	2.0	26	92	0	84	29	25	19	25	1.99
16172122--16172174	26	2.0	26	88	0	79	26	24	20	28	1.99
16173024--16173075	25	2.0	26	88	3	79	23	26	21	28	1.99
16174660--16174712	26	2.0	26	100	0	106	26	26	20	26	1.99
16175462--16175512	26	2.0	26	92	0	84	27	23	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16174227--16176564	770	3.0	770	83	5	2819	24	25	25	24	2.00
16176233--16176283	26	2.0	26	92	0	84	27	29	13	29	1.94
16177369--16177421	26	2.0	26	85	0	70	28	20	20	30	1.98
16177046--16177516	260	1.8	260	83	2	633	20	28	25	25	1.99
16178976--16179028	26	2.0	26	100	0	106	26	22	20	30	1.98
16181300--16181352	26	2.0	26	89	7	81	28	24	16	30	1.97
16180968--16184020	907	3.4	885	89	3	4276	25	25	23	24	2.00
16183073--16183125	26	2.0	26	92	7	90	30	26	16	26	1.97
16184687--16184739	26	2.0	26	85	7	72	28	24	18	28	1.98
16185511--16185615	26	4.0	26	87	0	147	24	23	20	31	1.98
16186823--16186874	26	2.0	25	85	3	68	30	21	21	26	1.98
16185689--16187749	900	2.3	894	85	2	2806	25	25	23	24	2.00
16189023--16189101	26	3.0	26	92	0	122	27	26	20	25	1.99
16189754--16189784	4	7.8	4	92	0	53	3	74	22	0	0.96
16189965--16190065	26	3.9	26	97	0	193	26	26	18	27	1.98
16189030--16190931	961	2.0	948	87	4	2710	25	26	23	24	2.00
16191786--16191838	26	2.0	26	88	0	79	28	22	18	30	1.98
16192093--16192920	413	2.0	412	90	1	1320	30	22	19	27	1.98
16193086--16193138	26	2.0	26	92	0	88	28	24	18	28	1.98
16193987--16194036	26	1.9	26	87	0	73	22	24	22	32	1.98
16194887--16194939	26	2.0	26	96	0	97	28	26	18	26	1.98
16192505--16200654	903	9.1	903	85	4	10406	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16201738--16201790	26	2.0	26	96	0	97	28	26	18	26	1.98
16203497--16203549	26	2.0	26	96	0	97	24	26	22	26	2.00
16204393--16204445	26	2.0	26	96	0	97	28	26	18	26	1.98
16202627--16207530	888	5.5	894	86	2	6632	25	24	24	25	2.00
16205284--16205336	26	2.0	26	92	0	88	24	24	20	30	1.99
16207071--16207123	26	2.0	26	88	0	79	26	20	22	30	1.98
16207652--16207704	26	2.0	26	88	0	79	30	24	16	28	1.97
16206958--16208110	580	2.0	580	85	2	1580	23	24	26	25	2.00
16208543--16208595	26	2.0	26	100	0	106	26	26	20	26	1.99
16207595--16212889	885	5.9	887	86	4	6759	25	24	23	25	2.00
16211222--16211273	26	1.9	28	92	7	90	25	26	19	28	1.98
16212111--16212163	26	2.0	26	100	0	106	26	26	20	26	1.99
16212959--16213011	24	2.2	23	80	9	70	7	43	30	18	1.78
16213693--16213745	26	2.0	26	88	0	79	28	26	18	26	1.98
16213413--16214745	665	2.0	670	84	3	1732	21	27	26	24	1.99
16214358--16214416	26	2.3	26	91	5	95	25	28	20	25	1.99
16215253--16215305	26	2.0	26	89	7	81	30	24	18	26	1.98
16217013--16217065	26	2.0	26	89	7	81	30	28	16	24	1.97
16217906--16217958	26	2.0	26	89	7	81	30	28	16	24	1.97
16214070--16221395	893	8.2	897	85	4	9010	25	25	23	25	2.00
16219723--16219781	26	2.3	26	88	11	88	25	30	20	23	1.98
16220619--16220671	26	2.0	26	92	0	88	28	24	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16221881--16221933	26	2.0	26	92	0	88	28	24	18	28	1.98
16221438--16225471	902	4.6	871	79	9	4106	25	24	23	25	2.00
16225267--16225610	159	2.2	159	84	2	440	21	28	28	21	1.99
16225584--16225636	26	2.0	26	92	0	88	33	26	11	28	1.91
16227075--16227127	26	2.0	26	92	0	88	30	26	18	24	1.98
16227752--16227804	26	2.0	26	92	0	88	28	24	18	28	1.98
16228622--16228674	26	2.0	26	96	0	97	28	26	18	26	1.98
16227178--16229176	869	2.3	875	84	5	2588	27	23	23	25	2.00
16229373--16229425	26	2.0	26	100	0	106	26	26	20	26	1.99
16230259--16230311	26	2.0	26	96	0	97	28	26	18	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117