genome.fa.s90.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  79  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15989905--15990020	53	2.2	53	84	4	153	23	19	20	36	1.95
15990532--15990636	22	4.3	23	74	18	81	46	2	1	48	1.27
15990541--15990602	12	5.5	12	74	18	62	43	0	1	54	1.09
15990758--15990789	10	3.1	11	82	17	50	46	0	0	53	1.00
15990913--15990957	19	2.3	20	85	14	60	53	0	0	46	1.00
15991276--15991356	22	4.0	21	75	13	62	46	2	0	50	1.14
15991320--15991423	53	1.9	54	83	16	135	50	1	0	46	1.18
15991530--15991603	27	2.8	25	74	11	67	48	4	1	45	1.29
15991569--15991641	6	12.5	6	69	25	50	47	4	0	47	1.21
15991542--15991652	47	2.3	50	78	21	114	46	3	0	48	1.25
15991738--15991845	33	3.2	35	70	12	100	51	0	2	44	1.22
15991919--15991979	17	3.5	17	75	8	61	45	4	0	49	1.23
15992618--15992682	16	4.3	16	72	20	68	50	0	1	47	1.10
15993422--15993486	19	3.2	19	78	18	67	44	3	1	50	1.26
15993454--15993503	11	4.9	10	75	20	50	48	0	2	50	1.12
15993474--15993527	20	2.6	22	82	8	69	50	0	3	46	1.19
15993429--15993505	15	5.5	15	67	25	53	48	1	1	49	1.17
15993673--15994399	180	4.0	181	76	9	539	39	8	10	41	1.70
15993682--15994362	360	1.9	359	79	8	767	39	8	9	42	1.69
15994812--15994876	16	4.1	15	77	14	69	52	1	1	44	1.19
15994812--15994876	32	2.1	31	85	8	87	52	1	1	44	1.19
15996416--15996467	20	2.5	21	81	15	63	51	1	1	44	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15996542--15996586	14	3.1	15	79	17	51	55	4	0	40	1.20
15996716--15996759	11	3.9	11	77	16	54	52	0	0	47	1.00
15996725--15996806	20	4.2	20	73	17	57	45	3	0	51	1.19
15997128--15997193	11	5.8	11	75	21	57	46	1	0	51	1.10
15997121--15997190	24	2.8	24	73	25	65	47	1	0	51	1.09
15997152--15997194	10	4.3	10	91	8	70	46	0	0	53	1.00
15997401--15997451	11	4.5	11	85	4	66	43	0	0	56	0.99
15997403--15997445	6	7.5	6	84	10	54	39	0	0	60	0.97
15997710--15997805	9	10.3	9	68	21	56	42	2	0	55	1.11
15997716--15997771	26	2.2	24	80	17	69	41	1	0	57	1.09
15997726--15997776	26	2.0	25	96	3	93	41	0	0	58	0.98
15997726--15997794	26	2.5	26	86	11	77	43	0	0	56	0.99
15997899--15997950	24	2.3	22	83	6	68	50	0	0	50	1.00
15997926--15997965	19	2.0	21	90	9	66	52	0	2	45	1.14
15997914--15997975	27	2.2	29	80	5	74	51	0	1	46	1.10
15997999--15998129	8	13.2	10	67	19	53	46	0	2	50	1.19
15998023--15998089	22	3.0	22	74	10	66	40	1	2	55	1.24
16004974--16005005	16	2.0	16	93	0	55	40	0	3	56	1.15
16005379--16005419	16	2.6	16	85	11	57	56	0	0	43	0.99
16005450--16005491	20	2.1	20	86	8	59	57	2	0	40	1.12
16005744--16005776	18	1.9	17	88	11	50	48	9	6	36	1.60
16005739--16005784	16	2.6	17	80	13	58	45	6	10	36	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16006201--16006246	16	2.7	16	86	10	56	36	0	6	56	1.25
16006260--16006344	13	6.2	13	72	20	50	44	5	2	47	1.40
16006590--16006624	13	2.6	13	90	4	52	51	0	2	45	1.16
16006573--16006612	18	2.1	18	86	9	53	50	0	2	47	1.14
16006716--16006802	25	3.6	24	77	14	72	49	2	0	48	1.13
16006771--16006831	27	2.2	29	80	11	74	49	0	0	50	1.00
16006996--16007061	29	2.2	30	84	7	82	51	0	1	46	1.10
16007047--16007093	16	3.1	17	82	17	59	46	0	4	48	1.21
16007175--16007218	17	2.6	17	82	7	54	52	4	0	43	1.22
16007279--16007316	16	2.2	18	90	9	62	36	0	5	57	1.21
16007321--16007450	18	6.8	18	65	24	54	46	0	3	49	1.25
16007376--16007435	15	3.8	16	77	18	63	48	0	3	48	1.18
16007377--16007462	14	5.5	15	76	13	59	47	0	2	50	1.14
16007409--16007462	18	3.1	17	77	20	58	51	0	0	48	1.00
16007434--16007477	19	2.4	18	81	7	52	52	2	0	45	1.13
16007769--16007831	27	2.3	26	83	5	72	47	1	4	46	1.33
16007972--16008015	14	3.1	14	81	12	54	45	0	0	54	0.99
16007959--16008015	29	2.0	27	83	12	71	50	0	0	49	1.00
16007985--16008029	23	1.9	24	81	4	56	48	4	0	46	1.22
16008131--16008297	91	1.8	91	85	1	237	38	4	7	49	1.51
16008448--16008511	24	2.8	23	76	6	60	50	3	1	45	1.27
16008863--16008889	14	1.9	14	100	0	54	37	7	11	44	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16009008--16009070	7	9.0	7	74	19	51	47	1	0	50	1.10
16009012--16009070	16	3.6	16	70	17	50	47	1	0	50	1.11
16009169--16009195	13	2.1	13	100	0	54	51	7	7	33	1.58
16009444--16009477	17	2.0	17	88	11	52	47	0	0	52	1.00
16009444--16009480	19	2.0	18	94	5	65	45	0	0	54	1.00
16009990--16010031	10	4.5	10	85	8	54	50	0	0	50	1.00
16009982--16010030	19	2.7	17	79	14	53	48	0	0	51	1.00
16010188--16010272	23	3.6	24	73	20	72	45	1	0	52	1.08
16010412--16010497	31	2.6	35	78	12	83	47	2	2	47	1.27
16010428--16010497	36	1.9	36	82	5	88	45	2	2	48	1.32
16010456--16010535	21	3.6	22	72	27	64	40	0	2	57	1.12
16010569--16010628	26	2.2	27	80	14	70	50	0	0	50	1.00
16011393--16011438	15	2.9	16	80	9	58	47	4	0	47	1.21
16011488--16011565	29	2.7	29	86	6	95	44	2	6	46	1.42
16012073--16012124	26	2.0	26	81	7	61	40	1	1	55	1.22
16012087--16012251	57	3.0	55	72	20	132	44	1	1	52	1.22
16012436--16012493	31	1.9	29	83	13	73	55	0	0	44	0.99
16012884--16012932	13	3.6	14	77	17	50	48	0	2	48	1.12
16012989--16013091	13	8.3	13	71	21	62	50	0	0	49	1.00
16012980--16013031	22	2.2	25	83	10	74	55	0	0	44	0.99
16012986--16013098	8	14.2	8	68	18	51	52	0	0	47	1.00
16012980--16013024	17	2.6	17	82	6	56	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16013011--16013115	34	3.1	34	76	14	101	51	0	0	48	1.00
16012996--16013102	17	6.2	17	69	23	64	52	0	0	47	1.00
16013123--16013183	17	3.3	19	80	19	67	39	4	0	55	1.21
16013367--16013692	180	1.8	181	87	4	496	42	10	6	40	1.64
16014325--16014404	41	2.0	41	87	2	117	50	3	0	46	1.19
16014709--16014761	18	2.9	18	81	15	65	52	0	0	47	1.00
16015286--16015328	22	2.0	21	90	4	59	65	0	0	34	0.93
16015407--16015448	19	2.2	19	83	8	50	52	7	0	40	1.29
16015880--16015916	19	2.0	19	85	15	51	51	2	8	37	1.46
16015959--16016011	19	2.9	18	80	8	54	45	3	1	49	1.31
16016097--16016169	32	2.3	34	77	18	84	53	1	1	43	1.17
16016095--16016163	16	4.7	15	80	10	72	52	1	1	44	1.19
16016505--16016553	8	5.8	9	77	18	52	46	0	0	53	1.00
16016670--16016703	15	2.3	15	90	10	52	44	2	0	52	1.16
16016658--16016703	22	2.1	21	84	4	56	39	2	0	58	1.10
16016724--16016793	27	2.6	26	80	8	70	51	2	0	45	1.16
16016713--16016793	13	6.4	12	71	21	51	50	2	0	46	1.14
16016974--16017030	8	7.4	8	75	18	50	52	0	1	45	1.11
16016984--16017051	16	4.2	16	75	24	63	52	0	2	44	1.16
16017001--16017051	18	3.1	15	79	17	57	54	0	1	43	1.11
16017431--16017486	13	4.2	13	80	8	60	48	0	0	51	1.00
16017585--16017635	22	2.3	22	75	18	52	45	1	3	49	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16017602--16017652	18	2.8	18	77	13	52	41	5	3	49	1.45
16018519--16018570	17	3.1	16	81	15	61	50	0	1	48	1.12
16018643--16018702	12	5.2	12	78	13	72	43	0	0	56	0.99
16018643--16018702	23	2.6	23	86	7	77	43	0	0	56	0.99
16019705--16019769	7	9.7	7	73	20	59	43	1	0	55	1.09
16020384--16020435	24	2.2	24	82	6	61	46	3	5	44	1.45
16021333--16021370	17	2.2	17	86	9	51	47	0	2	50	1.15
16021415--16021471	18	3.2	17	79	18	55	43	0	3	52	1.18
16021428--16021478	18	2.8	17	80	11	57	47	0	1	50	1.12
16021447--16021484	14	2.4	16	87	12	53	47	0	0	52	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117