genome.fa.s90.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  48  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11201776--11201843	35	1.9	35	84	3	91	76	5	13	4	1.12
11202091--11202115	12	2.1	12	100	0	50	84	8	0	8	0.79
11202090--11202133	20	2.2	20	84	8	54	77	9	2	11	1.08
11202484--11202519	14	2.6	14	95	0	63	61	0	2	36	1.11
11202639--11202702	25	2.6	25	82	12	78	48	1	3	46	1.27
11202694--11202745	18	2.8	19	71	14	54	51	0	0	48	1.00
11202659--11202745	39	2.3	36	81	11	95	48	1	1	49	1.16
11202795--11203009	18	11.7	18	68	21	108	41	1	0	55	1.17
11202812--11202978	33	5.3	33	72	15	97	40	1	1	56	1.18
11202818--11203014	15	12.9	15	68	20	88	40	1	1	56	1.15
11202829--11203014	78	2.5	74	80	11	218	40	1	1	56	1.16
11202795--11203009	41	5.3	41	75	11	192	41	1	0	55	1.17
11202795--11203030	23	11.5	21	69	21	112	42	2	0	54	1.18
11203111--11203282	92	1.9	94	82	2	222	41	8	4	45	1.54
11205090--11205162	26	2.9	24	82	13	85	45	2	1	50	1.24
11205056--11205167	26	4.5	24	71	21	79	50	1	0	46	1.17
11211897--11211987	47	1.9	47	82	4	112	32	15	26	25	1.95
11215353--11215408	20	2.8	20	86	2	78	26	5	12	55	1.58
11215517--11215600	43	2.0	43	88	2	125	34	2	10	52	1.49
11216732--11216782	26	2.0	26	84	0	66	23	7	11	56	1.61
11217554--11217587	16	2.1	17	88	5	52	14	5	5	73	1.21
11220490--11220535	21	2.2	21	88	7	67	23	0	0	76	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11220491--11220534	4	10.8	4	81	13	54	25	0	0	75	0.81
11221214--11221675	149	3.1	146	78	9	445	30	10	12	45	1.76
11221214--11221721	49	10.2	50	75	11	343	30	10	12	46	1.76
11224077--11224411	7	51.3	7	69	13	123	42	34	2	21	1.66
11224081--11224299	6	34.5	6	68	16	95	42	34	1	22	1.62
11224078--11224303	26	8.6	26	69	16	103	42	33	1	22	1.62
11224081--11224147	13	5.2	12	82	8	71	41	32	0	25	1.56
11224340--11224370	15	2.1	15	93	0	53	38	35	6	19	1.77
11224340--11224409	19	3.4	22	76	13	69	40	35	5	18	1.75
11224335--11224421	19	4.3	19	74	12	68	39	36	6	17	1.76
11231204--11231229	13	2.0	13	100	0	52	0	0	7	92	0.39
11231716--11231854	19	7.1	19	77	11	120	20	0	35	43	1.53
11231714--11231854	13	10.8	13	70	11	92	20	0	36	42	1.52
11231720--11231854	39	3.5	39	81	9	150	20	0	36	42	1.53
11231896--11231971	7	10.7	7	69	18	50	18	0	38	43	1.50
11233746--11233784	20	2.0	20	85	10	53	23	10	12	53	1.69
11234336--11234500	81	2.0	82	83	1	206	32	16	21	30	1.95
11234361--11234515	82	1.9	81	83	1	202	33	16	21	29	1.95
11234435--11234641	115	1.8	115	79	4	247	35	15	18	30	1.92
11234632--11234756	51	2.4	52	83	2	135	33	15	21	29	1.94
11234663--11234795	52	2.6	52	83	4	153	32	15	21	30	1.95
11234937--11235088	41	3.7	41	73	7	128	38	15	17	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11235060--11235196	42	3.3	42	84	3	161	33	16	18	31	1.93
11235194--11235276	37	2.3	34	87	8	112	45	7	12	34	1.69
11236531--11236585	11	5.2	11	82	8	60	0	16	0	83	0.64
11236540--11236633	9	9.8	9	73	15	64	3	17	0	79	0.85
11236541--11236638	13	7.0	13	71	14	61	3	16	0	80	0.83
11236533--11236600	31	2.2	31	81	7	75	1	19	0	79	0.81
11236531--11236608	10	7.2	10	78	16	75	1	17	0	80	0.77
11237066--11237130	12	5.9	10	81	12	58	9	10	0	80	0.92
11237075--11237126	12	4.6	12	86	9	74	11	9	0	78	0.95
11237065--11237139	12	5.7	13	76	16	57	10	12	0	77	1.00
11239213--11239274	21	3.1	21	67	21	60	38	11	4	45	1.61
11239196--11239274	39	2.0	39	97	0	149	39	12	3	44	1.61
11242091--11242170	25	3.2	24	85	3	97	55	8	13	22	1.66
11242996--11243084	13	6.8	13	72	12	65	15	3	38	42	1.64
11242997--11243057	26	2.3	27	86	8	81	13	1	40	44	1.53
11243023--11243078	20	2.8	19	78	7	58	17	3	33	44	1.66
11242997--11243084	7	13.3	7	69	11	69	15	3	37	43	1.64
11244917--11244965	19	2.5	19	83	3	62	24	12	12	51	1.73
11244917--11244958	20	2.2	20	86	4	59	26	11	9	52	1.68
11249641--11249665	11	2.3	11	100	0	50	36	40	0	24	1.55
11250874--11250913	14	2.9	13	85	7	53	2	0	10	87	0.63
11250942--11251542	35	16.8	35	72	6	312	49	14	18	17	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11250942--11251539	72	8.4	72	73	6	245	49	14	18	17	1.80
11251019--11251543	179	2.9	175	80	5	543	49	13	18	18	1.80
11251198--11251424	107	2.1	107	80	3	260	49	14	18	18	1.80
11250977--11251494	251	2.1	249	81	3	603	48	14	18	17	1.81
11251625--11251802	34	5.3	34	76	9	177	28	16	19	35	1.94
11252463--11252624	34	4.7	36	75	10	160	32	16	12	37	1.87
11252438--11252624	102	1.8	101	87	3	277	32	15	13	38	1.86
11252464--11252700	67	3.5	66	81	3	240	32	16	13	38	1.87
11253101--11253163	24	2.6	24	84	2	81	44	12	14	28	1.82
11253398--11253547	32	4.6	33	70	13	112	32	17	15	35	1.91
11253398--11253610	70	3.2	63	81	9	237	29	17	16	35	1.93
11253457--11253578	36	3.5	35	74	5	115	26	18	19	36	1.94
11254438--11254512	33	2.3	32	81	6	87	4	20	1	74	1.05
11254473--11254506	9	3.9	9	84	7	52	0	20	0	79	0.73
11254426--11254508	17	4.8	17	75	7	78	3	20	1	74	1.03
11254472--11254512	21	1.9	22	90	5	66	0	17	0	82	0.66
11259834--11259858	12	2.1	12	100	0	50	40	0	8	52	1.31
11261219--11261273	17	3.2	17	70	14	51	60	10	0	29	1.31
11263051--11263102	27	2.0	27	84	3	70	1	9	13	75	1.14
11266641--11266681	3	13.7	3	100	0	82	68	0	0	31	0.90
11267829--11267881	23	2.4	21	79	14	61	15	9	47	28	1.76
11268486--11269363	69	12.4	68	81	5	901	42	14	24	19	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11268479--11269363	142	6.3	140	85	4	989	42	14	23	19	1.88
11268473--11269330	284	3.0	282	84	5	1090	41	14	24	19	1.88
11268487--11269355	35	24.6	34	66	13	245	42	14	24	19	1.88
11269475--11269519	22	2.0	22	91	0	72	31	20	20	28	1.97
11269496--11269943	122	3.7	122	92	1	703	35	14	16	33	1.90
11269496--11269943	243	1.9	238	90	3	709	35	14	16	33	1.90
11270433--11270817	33	11.7	33	84	1	470	33	17	21	28	1.95
11271606--11271636	14	2.1	14	94	5	53	0	9	0	90	0.46
11271610--11271634	11	2.3	11	100	0	50	0	8	0	92	0.40
11274349--11274393	5	9.0	5	88	7	56	75	0	0	24	0.80
11274349--11274402	21	2.7	21	82	5	67	72	1	0	25	0.95
11275465--11275553	16	5.9	15	69	12	74	19	1	30	49	1.55
11275461--11275553	32	3.0	32	81	10	97	19	1	31	48	1.56
11275787--11275816	3	10.0	3	100	0	60	66	0	0	33	0.92
11280738--11280786	10	4.8	10	80	5	53	42	24	0	32	1.55
11289259--11289303	22	2.0	22	95	0	81	55	2	4	37	1.32
11289457--11289549	15	6.4	15	68	20	54	52	2	1	44	1.20
11289428--11289717	46	6.3	49	72	21	175	55	1	1	41	1.17
11289428--11289541	49	2.4	46	86	7	149	54	1	1	42	1.21
11289579--11289717	15	9.4	15	69	25	84	56	1	0	41	1.13
11289500--11289717	81	2.8	80	86	6	284	55	1	0	42	1.14
11289428--11289717	18	15.8	18	71	22	187	55	1	1	41	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11289814--11289881	26	2.6	25	81	6	91	45	1	2	50	1.26
11289994--11290031	14	2.8	14	92	4	60	39	10	2	47	1.52
11290605--11290636	16	2.0	16	100	0	64	43	0	12	43	1.42
11296007--11296052	22	2.2	21	85	14	69	36	8	4	50	1.53
11295963--11296123	83	2.0	83	92	1	270	37	9	2	50	1.48
11298407--11298432	6	4.3	6	100	0	52	15	0	0	84	0.62
11298714--11298756	16	2.6	16	82	13	52	18	2	2	76	1.00
11299417--11299442	2	13.0	2	100	0	52	50	0	0	50	1.00
11302417--11302454	20	1.9	20	88	0	58	47	10	0	42	1.38
11304497--11304790	73	4.1	72	78	6	276	45	5	8	39	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117