genome.fa.s90.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  83  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16391811--16392205	159	2.5	157	83	2	477	21	30	27	20	1.98
16393724--16393771	26	1.9	25	83	8	62	31	10	25	33	1.89
16394626--16394676	26	2.0	26	92	0	84	27	15	29	27	1.96
16395457--16395509	26	2.0	26	92	0	88	26	16	26	30	1.97
16396360--16396438	26	3.0	26	88	0	122	29	17	22	30	1.97
16397281--16397333	26	2.0	26	92	0	88	26	16	26	30	1.97
16398185--16398237	26	2.0	26	88	0	79	26	18	24	30	1.98
16394938--16399421	903	4.9	903	89	3	6725	26	23	24	25	2.00
16399092--16399144	26	2.0	26	89	7	81	28	20	24	26	1.99
16400681--16400731	26	2.0	26	100	0	102	27	19	27	25	1.99
16402394--16402444	26	2.0	26	100	0	102	27	19	27	25	1.99
16404156--16404208	26	2.0	26	88	0	79	28	16	24	30	1.97
16404891--16404946	26	2.2	26	87	6	78	32	21	19	26	1.97
16405621--16405673	26	2.0	26	96	0	97	28	20	24	26	1.99
16406372--16406424	26	2.0	26	96	0	97	28	20	24	26	1.99
16403530--16407227	735	5.0	730	91	3	5606	26	22	23	27	2.00
16407102--16407154	26	2.0	26	96	0	97	28	20	24	26	1.99
16407994--16408046	26	2.0	26	96	0	97	24	20	26	28	1.99
16406398--16415129	883	9.8	881	72	13	6041	25	24	24	26	2.00
16408877--16408932	26	2.2	26	90	6	87	30	19	23	26	1.98
16406461--16409410	901	3.3	882	86	4	3889	24	23	24	26	2.00
16409303--16409515	105	2.0	105	100	0	426	21	15	20	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16413339--16413391	26	2.0	26	92	0	88	28	18	24	28	1.98
16412052--16415292	864	3.7	862	83	5	3905	26	24	24	25	2.00
16415266--16415318	26	2.0	26	96	0	97	28	20	24	26	1.99
16415107--16415477	185	2.0	185	85	4	507	22	29	28	19	1.98
16416817--16416893	26	3.0	26	96	0	136	28	18	28	24	1.98
16418596--16418648	26	2.0	26	100	0	106	30	16	22	30	1.96
16416031--16421357	887	5.9	889	85	4	6456	25	24	24	25	2.00
16419487--16419537	26	2.0	26	96	0	93	25	19	27	27	1.99
16420958--16421757	400	2.0	401	91	0	1278	26	26	23	23	2.00
16421687--16421744	26	2.2	27	87	9	84	25	17	24	32	1.96
16422589--16422641	26	2.0	26	92	0	88	26	18	24	30	1.98
16421359--16434122	902	14.3	896	75	11	8824	25	24	25	25	2.00
16424302--16424354	26	2.0	26	92	0	88	24	16	30	28	1.97
16424535--16424563	8	3.6	8	100	0	58	10	24	65	0	1.23
16425203--16425252	26	1.9	26	95	0	91	28	18	28	26	1.98
16429442--16429494	26	2.0	26	96	0	97	28	20	24	26	1.99
16429705--16429752	25	1.9	25	91	0	78	27	18	27	27	1.98
16431448--16431500	26	2.0	26	88	0	79	30	18	22	28	1.98
16430137--16434122	903	4.4	903	90	1	5964	25	25	25	24	2.00
16432352--16432404	26	2.0	26	85	7	72	28	15	24	32	1.95
16433254--16433306	26	2.0	26	88	0	79	28	20	22	28	1.99
16435706--16435757	26	2.0	26	96	0	95	26	13	26	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16434128--16442259	904	9.1	902	84	4	9947	25	23	25	25	2.00
16436618--16436670	26	2.0	26	96	0	97	28	20	24	26	1.99
16438403--16438454	26	2.0	26	88	0	77	25	15	28	30	1.96
16441025--16441077	26	2.0	26	92	0	88	26	20	22	30	1.98
16441929--16441981	26	2.0	26	92	7	90	28	22	22	26	1.99
16442475--16442553	26	3.0	25	83	3	95	29	21	22	26	1.99
16443398--16443476	26	3.0	25	87	3	104	30	20	22	26	1.98
16442264--16444134	902	2.1	900	92	3	3105	25	23	24	25	2.00
16445044--16445096	26	2.0	26	85	7	72	28	18	24	28	1.98
16444175--16447283	882	3.5	868	85	4	4056	25	24	25	25	2.00
16447474--16447523	26	1.9	26	100	0	100	28	22	26	24	1.99
16448360--16448412	26	2.0	26	88	0	79	28	16	24	30	1.97
16449249--16449301	26	2.0	26	96	0	97	28	20	24	26	1.99
16449434--16449486	26	2.0	26	92	0	88	28	22	22	26	1.99
16449241--16449637	185	2.1	185	86	1	562	23	26	28	22	1.99
16450335--16450385	26	2.0	26	100	0	102	29	19	23	27	1.98
16451236--16451288	26	2.0	26	92	0	88	26	20	26	26	1.99
16452139--16452188	26	1.9	26	95	0	91	30	20	24	26	1.98
16449430--16457264	901	8.7	900	86	3	10158	25	23	24	25	2.00
16453833--16453865	11	3.0	11	95	0	57	12	36	33	18	1.88
16453945--16453996	26	2.0	26	96	0	95	26	17	23	32	1.96
16455734--16455786	26	2.0	26	92	0	88	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16457295--16457366	26	2.8	26	89	0	108	31	16	23	27	1.96
16458206--16458258	26	2.0	26	92	0	88	26	16	26	30	1.97
16459127--16461795	896	3.0	900	86	6	3696	25	24	25	24	2.00
16462476--16462536	26	2.4	26	91	5	99	26	19	24	29	1.99
16464185--16464245	26	2.4	26	91	5	99	26	19	24	29	1.99
16465085--16465137	26	2.0	26	100	0	106	26	16	26	30	1.97
16465824--16465876	26	2.0	26	96	0	97	28	20	24	26	1.99
16466714--16466766	26	2.0	26	92	0	88	30	20	24	24	1.99
16465111--16483960	901	21.2	890	83	6	21035	25	24	24	25	2.00
16468519--16468571	26	2.0	26	92	0	88	26	16	28	28	1.97
16469419--16469471	26	2.0	26	96	0	97	28	16	26	28	1.97
16470310--16470362	26	2.0	26	89	7	81	28	18	26	26	1.98
16471142--16471219	26	3.0	26	86	0	120	26	17	25	29	1.98
16471934--16471984	25	2.0	25	85	7	68	9	25	37	27	1.87
16472905--16472957	26	2.0	26	96	0	97	26	18	26	28	1.98
16476459--16476509	25	2.0	25	96	0	93	29	21	25	23	1.99
16477359--16477410	25	2.0	25	88	3	77	28	19	25	26	1.98
16479152--16479204	26	2.0	26	88	0	79	24	16	26	32	1.97
16480045--16480095	26	2.0	26	96	0	93	27	19	23	29	1.98
16480949--16481001	26	2.0	26	96	0	97	28	18	26	26	1.98
16472464--16483960	894	12.9	894	85	4	13538	25	24	24	25	2.00
16487687--16487739	26	2.0	26	96	0	97	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16485231--16493711	877	9.6	872	84	5	9864	25	24	24	25	2.00
16491226--16491278	26	2.0	26	92	0	88	26	18	24	30	1.98
16492116--16492169	26	2.1	26	92	0	90	29	18	25	25	1.98
16495061--16495092	11	2.9	11	100	0	64	28	34	28	9	1.88
16495832--16495882	26	2.0	26	88	7	77	23	27	17	31	1.97
16496889--16496941	26	2.0	26	88	0	79	26	20	20	32	1.98
16497781--16497833	26	2.0	26	96	0	97	28	26	18	26	1.98
16501323--16501375	26	2.0	26	96	0	97	26	24	22	26	2.00
16502224--16502276	26	2.0	26	96	0	97	26	24	20	28	1.99
16503127--16503179	26	2.0	26	88	0	79	28	22	18	30	1.98
16499552--16515176	905	17.4	904	86	3	19643	25	24	24	25	2.00
16503609--16503658	26	1.9	26	83	0	64	56	14	8	22	1.64
16504914--16504968	26	2.1	26	89	0	83	25	23	20	30	1.98
16509382--16509434	26	2.0	26	92	0	88	26	26	20	26	1.99
16510287--16510365	26	3.0	26	90	3	115	30	24	17	27	1.97
16511226--16511275	26	1.9	26	95	0	91	32	24	16	28	1.96
16512123--16512175	26	2.0	26	88	0	79	26	24	20	28	1.99
16513004--16513054	26	2.0	26	96	0	93	29	23	17	29	1.97
16516097--16516149	26	2.0	26	88	0	79	28	22	20	28	1.99
16515175--16520518	888	5.9	892	86	2	6871	25	24	23	25	2.00
16517880--16517932	26	2.0	26	89	7	81	28	22	18	30	1.98
16518764--16518816	26	2.0	26	92	0	88	26	22	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16519664--16519739	26	2.9	26	96	0	134	25	28	17	28	1.97
16521186--16525627	860	5.1	857	85	5	5600	25	24	24	25	2.00
16524820--16524875	26	2.2	26	93	0	94	26	23	19	30	1.98
16527045--16527095	26	2.0	26	100	0	102	25	23	19	31	1.98
16527230--16527282	26	2.0	26	92	0	88	26	24	18	30	1.98
16528133--16528184	26	2.0	26	96	0	95	28	26	19	25	1.98
16527071--16532333	903	5.8	904	85	3	6825	25	24	24	26	2.00
16529023--16529075	26	2.0	26	88	0	79	24	22	22	30	1.99
16529929--16529981	26	2.0	26	96	0	97	32	26	15	26	1.95
16530833--16530911	26	3.0	26	87	3	106	31	22	16	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117