genome.fa.s90.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  22  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6284197--6284231	17	1.9	19	88	11	56	82	0	8	8	0.83
6290624--6290666	22	2.0	22	81	9	52	48	2	2	46	1.27
6291178--6291213	18	1.9	19	94	5	65	52	0	0	47	1.00
6291253--6291338	32	2.8	30	76	10	84	50	5	3	40	1.44
6291404--6291437	10	3.4	10	92	8	52	38	0	0	61	0.96
6291674--6291701	3	9.3	3	100	0	56	0	32	0	67	0.91
6299334--6299393	26	2.3	26	80	11	61	35	1	5	58	1.30
6299454--6300068	217	2.8	215	86	5	873	43	10	16	29	1.81
6299454--6300068	216	2.8	217	87	5	906	43	10	16	29	1.81
6300496--6300527	17	2.0	17	88	11	50	37	12	0	50	1.41
6301532--6301574	21	1.9	24	86	13	65	44	0	0	55	0.99
6304375--6305011	215	2.9	215	83	4	820	43	11	17	27	1.83
6306932--6306974	22	2.0	22	82	13	54	58	20	4	16	1.56
6307737--6308474	201	3.7	201	80	5	794	42	10	11	35	1.77
6309847--6310878	471	2.2	467	79	6	1077	47	10	8	33	1.68
6309847--6310908	233	4.5	233	78	6	949	47	10	8	33	1.69
6313577--6313751	62	2.8	63	76	11	155	36	12	13	38	1.82
6313741--6313864	60	2.1	60	82	7	146	43	10	16	29	1.81
6314682--6314722	21	2.0	21	85	0	55	53	12	14	19	1.72
6323653--6323712	21	3.0	21	69	20	56	45	0	0	55	0.99
6323649--6323768	42	2.8	43	80	13	117	45	0	0	54	1.06
6323663--6323772	42	2.5	45	81	16	135	47	0	0	51	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6323668--6323726	24	2.6	22	77	17	68	45	0	0	54	0.99
6323706--6323739	17	1.9	18	88	5	52	47	0	0	52	1.00
6323684--6323802	41	2.9	40	82	9	125	51	0	0	47	1.06
6324543--6324610	34	2.0	35	91	2	111	45	4	1	48	1.31
6324543--6324594	17	3.1	17	71	20	54	48	5	0	46	1.26
6328595--6328658	19	3.4	19	82	2	76	54	7	0	37	1.29
6328615--6328700	19	4.6	17	72	20	66	61	4	1	32	1.24
6328937--6328975	21	2.0	20	85	10	53	33	5	0	61	1.18
6328967--6329029	26	2.4	26	78	2	72	38	3	3	55	1.32
6328983--6329035	26	2.0	26	82	7	63	41	3	3	50	1.38
6329187--6329278	27	3.6	25	76	11	96	32	3	0	64	1.10
6329265--6329309	21	2.2	20	84	11	56	35	4	2	57	1.31
6329367--6329427	9	6.4	9	83	7	59	34	0	8	57	1.29
6329367--6329427	18	3.2	19	86	9	72	34	0	8	57	1.29
6329305--6329428	10	12.5	10	69	13	69	30	2	7	59	1.37
6329367--6329427	19	3.2	19	84	13	81	34	0	8	57	1.29
6333028--6333065	2	19.0	2	100	0	76	50	0	0	50	1.00
6335542--6335597	27	2.1	27	89	0	85	62	3	7	26	1.38
6336186--6336236	26	1.9	27	84	11	70	56	9	5	27	1.54
6337479--6337510	1	32.0	1	93	0	55	3	0	0	96	0.20
6337510--6337536	8	3.4	8	100	0	54	11	25	0	62	1.28
6345208--6345236	9	3.2	9	100	0	58	24	13	51	10	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6346293--6346353	31	2.0	31	83	6	79	32	0	3	63	1.10
6346310--6346355	15	3.0	15	84	15	67	36	0	0	63	0.95
6346314--6346363	15	3.3	15	76	20	50	34	2	0	64	1.05
6347949--6347982	14	2.3	15	90	5	52	44	2	0	52	1.16
6348566--6348704	70	2.0	68	90	2	215	39	17	12	30	1.87
6356875--6356900	2	13.0	2	100	0	52	0	0	50	50	1.00
6359324--6359362	2	19.5	2	100	0	78	51	0	48	0	1.00
6363179--6363206	2	14.0	2	100	0	56	0	0	50	50	1.00
6366364--6366390	2	13.5	2	100	0	54	51	0	0	48	1.00
6370181--6370224	19	2.2	20	84	11	56	43	6	4	45	1.51
6372178--6372210	15	2.3	15	89	5	50	9	15	0	75	1.03
6372308--6372358	18	2.9	18	82	8	61	1	17	1	78	0.94
6373046--6373102	25	2.3	26	82	14	75	47	0	3	49	1.18
6373069--6373116	15	3.0	16	79	14	55	45	0	2	52	1.12
6373101--6373168	17	3.6	19	70	25	56	50	0	2	47	1.16
6373240--6373332	21	4.6	20	71	20	59	45	2	1	51	1.20
6373278--6373318	17	2.6	15	78	14	55	43	2	0	53	1.13
6373282--6373316	17	2.1	17	94	0	61	40	2	0	57	1.14
6373472--6373599	42	3.3	39	78	16	131	50	0	2	46	1.19
6373482--6373585	42	2.4	44	83	12	144	47	0	0	50	1.14
6373543--6373601	29	2.1	28	84	9	77	47	0	1	50	1.11
6374718--6374785	30	2.3	30	80	14	79	45	1	1	51	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6375707--6375735	14	2.0	15	93	6	51	13	0	3	82	0.79
6375704--6375758	25	2.3	23	78	12	56	21	0	1	76	0.88
6376063--6376095	17	1.9	17	88	11	50	33	3	0	63	1.10
6377888--6377998	53	2.1	53	88	3	161	48	3	9	38	1.52
6377861--6377998	53	2.6	54	81	6	156	51	3	7	36	1.49
6379187--6379243	21	2.6	23	81	18	68	54	0	3	42	1.17
6379309--6379368	18	3.3	19	80	15	65	53	0	0	46	1.00
6381210--6381252	16	2.5	17	88	11	61	34	9	9	46	1.68
6393295--6393374	39	2.1	39	97	0	151	37	15	17	30	1.90
6406269--6406310	15	2.7	16	82	10	52	47	2	0	50	1.14
6406276--6406308	16	2.1	16	94	5	59	45	0	0	54	0.99
6406275--6406310	15	2.4	14	86	13	54	50	0	0	50	1.00
6409867--6409926	6	9.3	7	77	17	51	61	0	1	36	1.06
6410504--6410533	14	2.1	14	100	0	60	36	6	16	40	1.75
6411218--6411249	11	2.8	12	90	9	57	37	0	0	62	0.95
6413898--6413930	6	5.5	6	100	0	66	33	18	48	0	1.48
6438963--6439016	26	2.1	26	96	0	99	38	14	9	37	1.79
6439812--6439854	22	1.9	23	90	4	70	48	6	11	32	1.66
6443319--6443530	112	1.9	109	87	4	309	47	8	9	34	1.66
6447150--6447183	3	11.3	3	100	0	68	0	0	32	67	0.91
6451076--6451105	12	2.6	12	94	5	53	53	0	0	46	1.00
6452310--6452437	64	2.0	63	96	1	238	39	10	8	40	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6453884--6453923	2	20.0	2	84	0	53	57	0	0	42	0.98
6455024--6455067	23	1.9	23	85	0	61	52	0	4	43	1.22
6456070--6456112	22	1.9	23	85	4	61	65	6	2	25	1.30
6456195--6456237	22	2.0	22	85	0	59	51	0	11	37	1.39
6456503--6456541	12	3.2	12	85	3	51	38	0	5	56	1.22
6456621--6456655	16	2.2	16	89	0	52	60	0	2	37	1.12
6456774--6456807	16	2.1	17	88	5	52	50	0	0	50	1.00
6463163--6463192	10	3.1	10	95	4	53	63	0	0	36	0.95
6463529--6463585	27	2.2	26	83	3	69	47	0	0	52	1.00
6463567--6463622	25	2.3	25	84	3	69	42	5	0	51	1.24
6464115--6464168	21	2.5	22	76	14	58	50	0	3	46	1.19
6464750--6464800	2	26.5	2	77	15	54	49	0	1	49	1.12
6464755--6464800	19	2.4	19	88	0	65	47	0	2	50	1.13
6464750--6464800	23	2.2	23	89	0	84	49	0	1	49	1.12
6464904--6464950	20	2.3	21	82	14	62	48	2	0	48	1.13
6465064--6465102	20	2.0	20	85	10	53	56	0	0	43	0.99
6471353--6471469	6	19.5	6	81	0	99	46	6	4	42	1.50
6471353--6471469	10	11.7	10	77	0	99	46	6	4	42	1.50
6471572--6471621	2	25.0	2	83	0	55	42	2	6	50	1.38
6472119--6472156	2	19.0	2	94	0	67	47	0	0	52	1.00
6472433--6472459	2	13.5	2	100	0	54	48	0	0	51	1.00
6471827--6472459	314	2.0	309	88	6	929	41	4	9	44	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6472590--6472700	11	11.5	10	68	19	60	48	0	1	48	1.18
6472597--6472667	25	3.0	24	75	17	76	50	1	0	47	1.09
6474848--6474900	27	2.0	26	96	3	97	32	3	0	64	1.12
6474855--6474901	19	2.3	20	73	20	53	34	2	0	63	1.06
6474853--6474913	27	2.3	27	83	5	72	36	1	1	60	1.16
6474982--6475032	27	1.9	27	84	4	68	50	3	0	45	1.20
6482133--6482182	19	2.7	19	81	3	57	56	4	0	40	1.18
6482556--6482611	23	2.5	21	77	11	58	42	0	3	53	1.18
6485177--6485412	116	2.0	117	90	0	375	25	20	11	42	1.86
6486785--6487364	288	2.0	288	100	0	1160	34	14	16	33	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117