genome.fa.s90.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  39  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9542613--9542688	33	2.2	35	80	13	95	63	0	0	36	0.95
9543553--9543592	19	2.2	18	86	8	55	15	10	5	70	1.32
9545031--9545097	20	3.4	20	78	12	84	29	5	11	52	1.62
9545101--9545138	20	1.9	20	89	10	60	34	5	10	50	1.59
9545155--9545213	20	3.0	20	87	7	68	32	6	6	54	1.53
9545194--9545227	13	2.5	13	90	4	50	26	5	14	52	1.64
9546283--9546336	26	2.1	26	92	0	90	22	1	14	61	1.43
9548728--9548769	21	2.0	21	86	13	59	66	0	19	14	1.25
9549050--9549089	16	2.5	16	84	11	55	87	0	7	5	0.66
9549058--9549097	12	3.3	12	89	0	53	85	0	5	10	0.75
9549902--9549938	18	2.1	18	89	0	56	27	18	13	40	1.88
9550086--9550125	21	2.0	21	85	14	57	50	0	10	40	1.36
9550413--9550603	38	5.1	37	70	18	117	33	10	19	36	1.87
9550508--9550603	38	2.6	37	86	6	131	32	9	20	37	1.85
9550929--9550985	20	3.0	20	74	5	55	24	1	8	64	1.31
9552662--9552755	39	2.4	38	84	5	125	38	5	8	47	1.57
9552662--9552792	58	2.2	58	91	1	208	37	5	7	49	1.54
9552662--9552786	19	6.4	20	76	12	134	37	5	8	48	1.56
9552790--9552821	14	2.3	15	89	10	50	31	6	9	53	1.58
9552838--9552880	18	2.4	18	80	0	50	32	6	16	44	1.74
9552870--9552914	20	2.2	20	96	0	81	31	4	6	57	1.44
9552895--9552928	13	2.5	13	90	4	50	26	5	14	52	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9552908--9552971	32	2.0	32	81	6	76	23	6	18	51	1.69
9561957--9562092	55	2.5	55	79	5	159	26	10	11	51	1.70
9563009--9563041	16	2.1	16	94	5	59	60	0	0	39	0.97
9568820--9568851	12	2.6	12	95	5	55	37	0	0	62	0.95
9570162--9570195	14	2.4	14	90	0	50	82	5	5	5	0.95
9575091--9575187	34	2.8	35	79	11	103	36	13	12	38	1.82
9575572--9575833	96	2.7	98	80	2	287	23	14	18	43	1.87
9575956--9576136	99	1.8	98	85	5	258	22	13	20	43	1.87
9575956--9576171	99	2.2	98	80	12	237	24	13	20	41	1.88
9576466--9576743	48	5.7	48	84	8	334	29	11	20	38	1.88
9577793--9577839	13	3.5	13	80	13	51	29	0	0	70	0.88
9578845--9578871	10	2.7	10	100	0	54	48	0	0	51	1.00
9581065--9581336	63	4.3	63	72	13	209	42	13	8	36	1.74
9581109--9581341	125	1.8	126	83	8	296	39	14	8	37	1.77
9581064--9581367	63	4.8	63	71	12	169	40	14	8	36	1.77
9585936--9586069	62	2.2	62	84	8	166	32	11	14	41	1.82
9586110--9586283	63	2.8	63	72	7	149	37	13	16	32	1.88
9589086--9589122	16	2.2	17	90	4	58	18	0	5	75	0.99
9589787--9589824	19	2.0	19	100	0	76	36	15	5	42	1.70
9592761--9592984	58	3.7	58	76	14	218	46	5	13	34	1.66
9597283--9597307	9	2.8	9	100	0	50	92	0	8	0	0.40
9597262--9597345	31	2.6	31	81	10	82	75	0	19	5	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9598429--9598487	22	2.7	23	86	7	70	35	8	18	37	1.81
9599045--9599255	41	5.2	39	86	6	269	24	18	21	35	1.96
9599045--9599255	82	2.6	81	88	3	314	24	18	21	35	1.96
9599245--9599485	134	1.8	128	87	5	356	44	11	15	27	1.81
9599673--9599724	24	2.2	24	82	6	61	15	5	3	75	1.14
9602202--9602549	58	5.7	59	76	15	334	46	5	13	34	1.66
9602202--9602455	129	2.0	129	87	7	374	49	4	11	34	1.60
9602330--9602549	118	1.9	118	87	9	333	43	6	14	35	1.70
9603986--9604036	19	2.5	21	90	9	88	50	21	0	27	1.48
9604202--9604245	18	2.4	18	88	0	61	43	4	11	40	1.61
9606016--9606253	118	2.0	118	93	0	404	39	5	15	39	1.72
9609774--9609808	5	7.0	5	93	0	61	0	17	0	82	0.66
9611876--9611931	21	2.7	21	78	10	53	76	0	14	8	1.00
9613322--9613355	16	2.1	16	88	0	50	26	14	11	47	1.79
9614002--9614044	22	2.0	22	86	9	61	27	27	13	30	1.95
9614010--9614052	22	2.0	22	81	9	52	30	27	13	27	1.95
9614111--9614169	22	2.7	22	76	5	66	28	25	16	28	1.97
9613926--9614769	125	6.8	124	84	4	932	31	15	15	37	1.89
9614238--9614286	22	2.2	22	85	7	64	30	18	16	34	1.93
9613926--9615015	253	4.4	249	79	9	1032	31	16	15	36	1.90
9614619--9614671	22	2.4	22	81	6	63	32	22	15	30	1.94
9614638--9614680	22	2.0	22	81	9	52	34	18	13	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9614525--9614961	230	1.9	228	85	5	614	31	16	15	37	1.90
9614753--9615021	126	2.1	127	81	6	307	30	19	14	35	1.92
9614512--9615006	230	2.2	228	82	7	610	31	17	15	35	1.91
9614983--9615044	22	2.8	22	82	4	72	29	25	11	33	1.91
9614845--9615247	146	2.8	145	84	5	492	30	19	16	34	1.94
9615116--9615164	22	2.2	22	88	0	71	36	16	14	32	1.89
9623551--9623576	3	8.7	3	100	0	52	30	0	0	69	0.89
9624444--9624470	2	13.5	2	100	0	54	51	0	0	48	1.00
9624665--9624707	8	5.4	8	100	0	86	11	0	0	88	0.52
9627060--9627108	21	2.4	21	83	13	66	55	0	0	44	0.99
9627063--9627105	20	2.1	21	87	8	63	55	0	0	44	0.99
9629320--9629367	15	3.3	14	83	11	60	35	4	2	58	1.29
9629325--9629372	15	3.2	15	80	11	53	43	4	2	50	1.33
9629382--9629416	18	2.0	18	88	5	54	25	0	17	57	1.40
9629650--9629694	15	3.2	13	84	12	54	46	0	2	51	1.13
9630351--9630413	3	21.0	3	100	0	126	33	0	0	66	0.92
9631554--9631593	21	1.9	21	84	0	53	42	5	2	50	1.37
9634826--9634982	52	3.0	51	80	5	181	26	22	7	43	1.80
9638978--9639035	25	2.3	24	85	5	80	56	1	3	37	1.26
9639143--9639172	14	2.1	14	100	0	60	40	10	6	43	1.64
9640869--9640894	11	2.4	11	100	0	52	26	0	7	65	1.20
9646003--9646033	14	2.1	14	94	5	53	0	12	0	87	0.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9649001--9649054	7	8.0	7	76	13	51	38	0	1	59	1.08
9650427--9650464	3	12.7	3	94	0	67	31	0	2	65	1.06
9650739--9650791	19	2.5	22	73	14	67	35	7	3	52	1.48
9650767--9650818	27	1.9	27	88	7	79	36	7	7	48	1.61
9650792--9650836	22	2.0	22	82	0	54	33	11	11	44	1.75
9651777--9651839	21	2.9	22	78	4	65	39	12	3	44	1.59
9651827--9651883	22	2.6	22	74	0	60	40	3	5	50	1.42
9651970--9652027	21	2.7	22	78	2	73	39	15	1	43	1.57
9652033--9652219	22	8.7	22	75	8	100	37	10	4	47	1.57
9652172--9652219	11	4.3	12	75	17	50	35	6	4	54	1.45
9652161--9652243	22	3.8	21	84	7	103	36	9	4	49	1.57
9652268--9652300	13	2.5	13	85	14	50	30	3	12	54	1.52
9652307--9652359	22	2.4	22	90	0	79	37	7	5	49	1.55
9652294--9652369	22	3.5	22	74	12	75	34	6	6	52	1.53
9652471--9652680	22	9.4	22	66	13	70	34	8	6	50	1.58
9652543--9652680	44	3.1	43	74	2	123	35	9	5	49	1.59
9652114--9652947	434	1.9	435	83	3	1079	36	8	5	48	1.57
9652775--9652822	15	3.5	15	72	21	59	35	8	4	52	1.51
9652759--9652841	26	3.4	25	87	12	113	37	9	4	48	1.57
9652759--9652853	26	3.9	24	75	20	74	36	9	4	49	1.55
9652881--9652933	11	4.9	11	79	4	54	35	5	5	52	1.49
9652703--9652986	22	12.7	22	70	17	115	37	7	4	50	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9656220--9656337	61	1.9	61	84	6	159	32	14	22	30	1.94
9656529--9656630	51	2.0	52	88	1	152	50	6	15	27	1.70
9657069--9657168	31	3.3	30	75	9	94	37	19	17	27	1.93
9659005--9659051	24	2.0	24	83	8	60	42	2	0	55	1.12
9661026--9661223	62	3.2	60	77	12	202	32	11	14	41	1.81
9662425--9662496	18	3.8	18	73	20	58	68	5	0	26	1.12
9664161--9664203	23	1.9	23	85	4	61	60	0	6	32	1.23
9664238--9664305	9	7.6	9	73	16	61	75	1	1	22	0.97
9664238--9664299	19	3.3	19	80	14	67	74	1	1	22	1.00
9664220--9664305	27	3.1	27	81	5	84	72	2	2	23	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117