genome.fa.s90.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  50  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11443873--11443910	19	2.0	19	94	0	67	28	26	15	28	1.96
11449560--11449613	24	2.2	24	100	0	108	35	20	12	31	1.90
11449560--11449613	12	4.5	13	84	15	80	35	20	12	31	1.90
11451907--11451965	30	2.0	30	86	0	82	55	3	8	32	1.46
11453336--11453413	32	2.5	31	73	17	74	48	2	0	48	1.15
11460651--11460701	16	3.1	16	81	15	52	66	9	7	15	1.43
11462406--11462442	3	12.7	3	94	5	67	29	0	0	70	0.88
11462890--11462934	21	2.0	22	83	8	56	44	4	26	24	1.72
11463385--11463409	10	2.5	10	100	0	50	28	0	0	72	0.86
11468839--11469081	120	2.0	120	79	3	256	17	25	14	41	1.88
11469520--11469591	3	24.3	3	86	8	76	27	1	6	63	1.28
11469992--11470031	21	1.9	21	90	10	64	10	0	30	60	1.30
11470487--11470566	26	3.1	23	73	19	61	20	2	6	71	1.20
11472572--11472624	20	2.6	19	80	13	61	49	1	1	47	1.23
11472573--11472702	11	12.8	10	70	16	72	45	1	3	50	1.26
11472593--11472698	38	2.6	42	75	20	118	43	1	2	51	1.27
11472615--11472828	51	4.4	48	74	16	172	43	1	2	51	1.24
11472744--11472858	56	2.0	56	80	11	126	40	2	3	53	1.32
11472818--11472898	41	2.0	40	83	11	103	44	3	3	48	1.38
11472961--11473029	21	3.4	20	78	9	77	44	1	5	47	1.35
11473343--11473367	12	2.1	12	100	0	50	36	0	0	64	0.94
11475707--11475749	23	2.0	22	81	9	52	46	2	4	46	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11475843--11475934	21	4.6	20	72	9	80	41	2	3	53	1.29
11475991--11476172	29	6.6	28	75	15	141	43	2	2	50	1.30
11475909--11476055	68	2.2	67	78	10	165	44	3	2	50	1.30
11475991--11476231	58	4.2	58	75	8	170	43	3	2	50	1.33
11476133--11476170	11	3.5	11	78	7	51	39	0	0	60	0.97
11476104--11476209	50	2.1	50	80	3	115	43	4	0	50	1.29
11476224--11476289	14	4.9	14	74	22	54	46	3	3	46	1.33
11476224--11476274	27	2.0	27	84	7	70	47	3	1	47	1.32
11476313--11476382	30	2.3	30	87	2	95	57	2	8	31	1.44
11477279--11477323	18	2.5	18	85	0	72	33	0	0	66	0.92
11478738--11478778	22	1.9	21	90	5	64	29	9	7	53	1.60
11481023--11481243	119	1.9	116	91	2	361	52	10	0	35	1.43
11481289--11481349	26	2.4	26	86	2	88	70	16	1	11	1.24
11484703--11484754	24	2.2	24	86	6	70	65	13	3	17	1.41
11487900--11487934	17	2.1	17	94	0	61	25	17	14	42	1.86
11490340--11490395	26	2.0	29	83	10	73	32	10	7	50	1.64
11490869--11490893	5	5.0	5	100	0	50	40	0	0	60	0.97
11491019--11491048	9	3.4	9	90	9	53	43	10	0	46	1.37
11496703--11496734	3	11.0	3	93	6	57	34	0	0	65	0.93
11498856--11498935	30	2.7	30	71	9	83	72	0	22	5	1.04
11500320--11500401	43	1.9	42	85	7	112	37	10	15	35	1.83
11500701--11501078	42	9.1	40	85	3	369	25	14	20	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11500701--11500970	83	3.3	82	90	4	409	26	14	20	37	1.92
11500708--11501132	42	10.2	42	84	4	275	25	14	19	40	1.89
11501757--11501795	16	2.4	16	86	0	51	61	0	0	38	0.96
11501742--11501802	30	2.0	30	83	0	77	55	0	0	44	0.99
11502510--11502980	171	2.8	169	93	0	789	40	8	13	37	1.75
11505661--11505718	30	1.9	30	89	6	91	43	5	1	50	1.35
11505736--11505816	29	2.8	28	73	16	76	59	3	3	33	1.33
11506296--11506346	21	2.5	20	81	9	57	29	5	13	50	1.65
11506782--11506847	33	2.0	33	88	2	98	37	4	12	45	1.62
11509622--11509676	28	2.0	28	96	0	101	36	9	9	45	1.68
11512077--11512109	17	1.9	17	100	0	66	45	6	24	24	1.75
11512229--11512262	8	4.4	8	85	7	52	11	0	20	67	1.21
11513858--11513882	12	2.1	12	100	0	50	0	40	0	60	0.97
11514267--11514309	21	2.1	21	83	8	54	32	37	0	30	1.58
11515178--11515226	24	2.0	24	85	14	66	42	0	6	51	1.27
11515740--11515774	17	2.1	17	94	0	61	28	5	14	51	1.65
11516062--11516226	80	2.1	80	96	1	305	34	8	18	38	1.81
11517168--11517212	2	22.5	2	100	0	90	0	48	0	51	1.00
11519197--11519234	2	19.5	2	94	5	69	52	0	47	0	1.00
11533526--11533571	23	2.0	23	100	0	92	47	8	13	30	1.72
11540015--11540080	17	4.0	15	72	18	51	25	1	25	46	1.61
11540023--11540063	17	2.4	17	88	8	57	29	2	26	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11540028--11540081	17	3.2	17	84	10	58	25	0	24	50	1.50
11541663--11542332	170	3.9	171	86	3	846	42	11	21	24	1.85
11542245--11542414	69	2.5	68	80	7	198	42	11	21	25	1.85
11542095--11542685	244	2.4	245	89	2	875	44	12	20	23	1.85
11542549--11542844	102	2.9	102	84	6	352	44	11	20	22	1.84
11543936--11543976	14	2.8	15	79	17	50	4	2	9	82	0.89
11553641--11553689	22	2.3	21	85	3	62	71	4	2	22	1.13
11553660--11553688	12	2.3	13	94	5	51	75	0	0	24	0.80
11555279--11555341	17	3.8	17	73	22	53	20	1	26	50	1.57
11555700--11555746	21	2.2	22	84	3	60	55	10	0	34	1.35
11556921--11556973	26	2.0	26	85	7	70	37	5	5	50	1.50
11559473--11559670	74	2.7	74	78	6	215	41	16	9	33	1.79
11559533--11559718	73	2.6	73	79	7	184	42	15	8	33	1.78
11562194--11562249	28	2.0	28	89	0	85	41	12	17	28	1.86
11563163--11563347	92	2.0	92	89	0	280	20	20	21	37	1.94
11565635--11565694	29	2.1	29	81	12	70	50	0	5	45	1.23
11572716--11572793	41	1.9	40	85	12	106	51	0	2	46	1.14
11573252--11573292	8	5.2	8	80	13	50	39	0	2	58	1.11
11573452--11573491	21	2.0	20	90	5	62	40	0	2	57	1.12
11575618--11575687	28	2.6	25	77	18	70	44	0	1	54	1.09
11575618--11575687	26	2.8	24	79	14	63	44	0	1	54	1.09
11575743--11575767	12	2.1	12	100	0	50	44	24	8	24	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11577060--11577358	144	2.1	141	91	4	485	59	7	11	22	1.56
11577134--11577358	77	3.1	75	66	19	204	60	6	10	23	1.53
11584988--11585133	8	18.5	8	69	17	58	48	27	0	23	1.56
11584988--11585103	16	7.2	16	73	18	82	47	27	0	25	1.52
11584988--11585111	32	3.9	31	77	16	112	47	28	0	24	1.52
11585024--11585119	8	12.0	8	70	22	60	47	29	0	22	1.51
11585032--11585187	15	9.6	15	70	21	84	49	30	1	19	1.56
11585136--11585169	14	2.3	15	90	5	52	58	32	0	8	1.29
11585067--11585150	39	2.2	38	85	8	107	51	27	1	20	1.55
11586393--11586442	26	2.0	25	88	4	73	26	2	4	68	1.18
11591167--11591204	19	2.0	20	89	5	60	76	2	21	0	0.91
11591305--11591336	15	2.0	17	88	11	50	59	12	12	15	1.61
11607064--11607114	22	2.3	22	71	15	52	43	0	0	56	0.99
11609162--11609211	18	2.8	18	78	3	57	46	2	0	52	1.12
11614326--11614376	25	2.0	25	96	0	93	37	11	5	45	1.65
11617604--11617651	21	2.2	21	82	13	62	41	12	10	35	1.77
11625846--11625898	18	2.5	23	77	22	55	20	3	0	75	0.96
11625846--11625890	18	2.4	18	92	3	72	20	4	0	75	0.97
11626335--11626411	30	2.7	29	79	14	90	18	1	22	58	1.46
11626837--11626896	19	3.1	18	79	13	59	10	3	5	81	0.95
11626840--11626896	20	2.8	20	80	15	64	10	3	5	80	0.98
11626995--11627064	26	2.7	26	93	0	113	25	5	11	57	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11626997--11627063	14	5.1	14	69	20	63	25	5	11	56	1.57
11627016--11627102	46	1.9	45	83	6	113	28	5	11	54	1.59
11627137--11627164	13	2.2	13	100	0	56	25	7	14	53	1.66
11627122--11627196	32	2.3	32	82	8	82	25	8	14	52	1.69
11628105--11628144	14	2.9	14	85	7	55	67	7	5	20	1.34
11628106--11628156	20	2.6	20	87	3	68	70	5	1	21	1.18
11628134--11628175	11	3.8	11	79	20	52	71	9	0	19	1.13
11632292--11632316	12	2.1	12	100	0	50	60	8	16	16	1.58
11639187--11639249	27	2.2	28	88	5	92	34	19	14	31	1.91
11640046--11640094	9	5.7	9	88	7	75	69	0	20	10	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117