genome.fa.s90.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  76  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15866461--15866510	21	2.3	21	80	10	57	50	0	0	50	1.00
15866449--15866494	15	3.1	15	84	6	67	50	0	0	50	1.00
15866643--15866707	21	2.9	21	77	11	67	46	0	0	53	1.00
15866661--15866702	17	2.5	18	81	14	54	42	0	0	57	0.99
15867020--15867071	25	2.1	24	82	10	61	46	0	7	46	1.31
15867512--15867551	17	2.3	17	91	4	62	42	2	5	50	1.37
15867685--15867742	11	4.9	12	76	16	59	44	6	0	48	1.29
15867685--15867742	24	2.5	22	86	10	80	44	6	0	48	1.29
15867958--15867998	21	1.9	22	85	5	57	53	2	0	43	1.13
15867987--15868039	24	2.3	23	87	9	72	49	1	1	47	1.23
15868139--15868206	14	4.6	16	73	23	51	45	2	4	47	1.38
15868277--15868329	20	2.6	22	82	17	78	52	3	0	43	1.19
15868285--15868332	19	2.5	19	87	9	71	52	4	0	43	1.20
15868462--15868527	15	4.3	15	73	17	64	54	0	0	45	0.99
15868496--15868554	12	5.0	13	80	13	58	47	0	1	50	1.11
15868629--15868683	25	2.2	25	87	6	76	49	0	0	50	1.00
15868632--15868670	16	2.5	15	83	4	51	46	0	0	53	1.00
15868629--15868688	27	2.3	25	80	11	68	48	0	0	51	1.00
15868629--15868698	26	2.6	28	78	13	85	47	1	0	51	1.09
15868663--15868779	50	2.5	45	73	22	107	44	4	1	49	1.32
15869111--15869135	12	2.1	12	100	0	50	40	0	0	60	0.97
15869653--15870249	181	3.3	176	77	9	480	39	8	10	41	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15870022--15870478	229	2.0	224	80	8	498	38	9	9	41	1.72
15870263--15870976	181	3.9	181	78	4	625	41	8	9	40	1.68
15871463--15871511	23	2.1	24	85	11	66	44	2	2	51	1.24
15871733--15873222	181	8.3	180	78	8	1338	39	7	10	42	1.68
15871740--15873222	361	4.1	357	78	5	1463	39	7	10	42	1.68
15873326--15873972	181	3.6	180	77	4	579	42	8	10	37	1.71
15873931--15873963	18	1.9	17	88	11	50	48	6	6	39	1.53
15873926--15873972	19	2.7	18	80	12	62	44	4	10	40	1.59
15873988--15875242	181	7.0	181	76	7	1023	42	9	7	40	1.66
15875335--15875380	14	3.2	14	78	6	56	45	2	2	50	1.26
15875622--15875674	19	2.7	20	83	13	65	52	1	1	43	1.23
15875994--15876036	21	2.0	21	82	8	52	44	2	0	53	1.13
15876428--15876456	12	2.5	12	94	5	51	48	0	0	51	1.00
15876489--15876520	16	1.9	17	93	6	57	40	6	0	53	1.26
15876965--15877003	19	2.1	19	90	0	60	48	2	0	48	1.15
15877484--15877520	14	2.6	14	95	0	65	45	0	0	54	1.00
15877501--15877569	29	2.4	27	83	11	75	49	0	2	47	1.16
15877501--15877602	52	2.0	52	81	11	120	49	0	1	48	1.19
15877927--15877969	21	2.0	21	82	8	52	48	0	0	51	1.00
15878396--15878495	31	3.0	31	75	20	78	49	0	2	49	1.12
15878397--15878495	14	5.9	17	68	23	59	48	0	2	49	1.12
15878974--15879065	43	2.1	43	82	7	107	41	2	1	55	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15879005--15879049	17	2.5	18	85	7	56	40	0	0	60	0.97
15879054--15879126	4	17.5	4	74	20	53	49	0	4	46	1.21
15879337--15879383	22	2.1	22	84	7	60	44	2	4	48	1.34
15879400--15879433	10	3.5	10	88	8	52	55	0	0	44	0.99
15879381--15879437	19	3.1	19	85	7	64	54	3	0	42	1.17
15879461--15879492	15	2.1	15	100	0	64	46	0	6	46	1.27
15880013--15880068	19	2.9	19	76	10	60	53	1	0	44	1.11
15880400--15880447	16	2.9	16	81	12	62	45	0	2	52	1.12
15880397--15880454	18	3.4	18	75	17	54	50	0	1	48	1.11
15880536--15880584	16	3.4	14	78	18	55	61	4	2	32	1.26
15880984--15881352	178	2.1	179	80	4	404	38	7	10	43	1.67
15881424--15881448	13	1.9	13	100	0	50	32	0	8	60	1.26
15882317--15882363	21	2.2	21	84	0	58	51	0	2	46	1.13
15882333--15882391	15	4.1	15	70	22	54	52	0	1	45	1.10
15882360--15882417	25	2.3	26	85	5	68	53	1	0	44	1.10
15888476--15888517	20	2.2	19	83	12	50	54	0	0	45	0.99
15888541--15888575	16	2.2	16	89	0	52	42	0	2	54	1.15
15889260--15889744	182	2.7	178	76	8	476	38	7	9	43	1.67
15889828--15889877	19	3.0	16	78	18	57	52	2	0	46	1.12
15889833--15889889	18	3.1	18	84	2	60	49	1	1	47	1.22
15889995--15890049	27	2.0	27	89	6	85	45	3	3	47	1.38
15890723--15890766	23	1.9	23	81	9	54	50	4	0	45	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15890986--15891031	23	1.9	25	86	8	69	45	0	4	50	1.21
15891244--15891287	20	2.2	20	87	0	61	50	2	0	47	1.13
15891355--15891393	20	2.0	19	85	14	53	41	5	0	53	1.23
15892180--15892226	23	2.0	24	83	4	60	51	0	2	46	1.13
15892172--15892244	29	2.6	28	78	18	82	50	1	1	46	1.18
15892259--15893181	179	5.2	178	75	9	713	40	9	9	40	1.70
15892239--15893253	535	1.9	529	81	6	1231	41	9	8	40	1.69
15893508--15893563	21	2.6	21	85	2	76	39	3	1	55	1.28
15894944--15895475	182	3.0	179	79	6	542	44	10	6	39	1.64
15895938--15895987	22	2.4	20	83	12	57	44	0	4	52	1.20
15895946--15895998	20	2.6	21	77	17	67	43	0	5	50	1.25
15896806--15896854	22	2.2	22	92	0	80	46	2	0	51	1.12
15897101--15897144	20	2.1	21	88	12	65	50	4	2	43	1.35
15897138--15897775	181	3.6	180	77	6	555	40	8	10	40	1.70
15897993--15898039	23	2.0	24	84	12	62	53	4	0	42	1.20
15898225--15898312	27	3.0	30	70	23	80	46	2	1	50	1.21
15898232--15898340	56	1.9	56	80	10	125	45	3	1	48	1.30
15898343--15898429	32	2.7	31	81	13	79	51	2	1	44	1.21
15898357--15898450	40	2.4	38	75	12	91	50	2	2	45	1.25
15898510--15898567	25	2.3	25	79	8	64	44	1	0	53	1.10
15898874--15899204	180	1.8	181	80	5	402	40	8	9	42	1.67
15899553--15899612	20	3.0	20	74	13	61	48	0	1	50	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15899862--15899894	11	3.0	11	90	0	57	48	0	0	51	1.00
15900029--15900061	3	11.0	3	87	12	50	36	0	0	63	0.95
15900024--15900257	19	12.6	19	67	20	68	45	1	1	51	1.19
15900026--15900129	40	2.6	40	76	11	97	43	1	0	53	1.18
15900068--15900129	22	3.0	22	75	13	69	48	1	0	50	1.10
15900120--15900276	17	9.6	17	68	24	81	47	1	1	49	1.20
15900120--15900161	4	10.0	4	90	10	66	50	2	0	47	1.14
15900195--15900259	12	5.5	12	74	15	55	46	0	0	53	1.00
15900191--15900241	20	2.6	19	84	9	59	45	0	0	54	0.99
15900504--15900552	24	2.0	24	85	14	66	46	0	2	51	1.12
15900606--15900668	27	2.3	28	79	15	69	50	1	3	44	1.27
15900758--15900817	19	3.1	19	79	18	70	63	1	0	35	1.05
15900758--15900805	9	5.1	9	77	7	51	66	0	0	33	0.92
15900763--15900820	28	2.0	29	86	3	82	63	1	0	34	1.04
15900762--15900816	14	3.9	14	76	11	58	65	1	0	32	1.03
15900812--15900853	13	3.3	13	81	15	52	45	0	4	50	1.23
15901065--15901108	21	2.0	22	86	13	63	52	0	0	47	1.00
15901407--15901470	26	2.4	25	80	17	67	43	3	3	50	1.33
15901549--15901601	17	3.1	17	76	12	54	47	3	0	49	1.19
15901930--15901956	13	2.1	13	100	0	54	48	0	0	51	1.00
15901920--15901973	15	3.4	16	73	21	51	50	0	0	50	1.00
15901977--15902071	39	2.5	36	76	15	102	51	1	2	45	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15902198--15902267	21	3.4	21	69	11	63	45	0	0	54	0.99
15902217--15902281	34	1.9	33	81	12	78	52	0	0	47	1.00
15902198--15902325	41	3.0	42	78	17	108	47	0	2	50	1.14
15902816--15902876	15	4.1	15	79	12	63	47	0	1	50	1.10
15902820--15902888	20	3.5	20	75	16	65	50	0	1	47	1.09
15903143--15903249	21	5.0	21	68	14	58	53	4	1	40	1.33
15903413--15903457	19	2.2	21	88	7	67	53	0	0	46	1.00
15903438--15903503	23	2.8	24	71	15	66	51	0	3	45	1.16
15903692--15903742	21	2.4	22	81	12	63	52	0	3	43	1.19
15903929--15903994	34	1.9	34	84	6	89	45	0	1	53	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117