genome.fa.s90.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  7  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1835386--1835490	5	20.2	5	67	18	54	75	1	6	16	1.10
1835439--1835477	17	2.3	17	81	0	51	76	2	7	12	1.09
1835499--1835557	9	6.6	9	77	13	50	79	3	0	16	0.86
1835506--1835563	15	3.5	15	72	20	53	81	3	0	15	0.83
1836011--1836051	19	2.2	19	90	0	64	46	17	2	34	1.61
1836526--1836622	5	18.0	5	75	21	81	75	2	3	19	1.04
1836526--1836622	26	3.9	24	77	15	74	75	2	3	19	1.04
1836832--1836931	43	2.3	43	82	0	119	37	20	16	27	1.93
1836905--1837100	41	4.7	42	89	1	279	39	21	15	23	1.91
1837081--1837120	20	2.0	20	95	0	71	25	27	20	27	1.99
1838815--1838871	19	3.1	19	82	2	80	8	15	0	75	1.04
1842999--1843057	11	5.7	10	76	11	57	79	1	3	15	0.94
1843027--1843065	17	2.3	17	81	0	51	76	2	7	12	1.09
1843005--1843074	27	2.6	27	75	11	72	75	1	5	17	1.06
1843851--1843900	15	3.6	14	79	15	50	74	6	4	16	1.17
1843884--1843942	22	2.7	21	84	10	66	66	6	5	22	1.36
1843972--1844128	61	2.6	56	76	16	145	66	1	3	28	1.18
1844053--1844091	3	12.7	3	84	15	53	69	0	0	30	0.89
1844053--1844091	13	3.2	12	86	13	53	69	0	0	30	0.89
1844030--1844117	8	10.8	8	73	18	58	71	0	3	25	1.01
1844052--1844102	19	2.7	20	77	20	63	70	0	0	29	0.87
1849892--1849949	21	2.7	21	79	12	73	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1849892--1849948	7	8.0	7	75	11	53	54	0	0	45	0.99
1856557--1856594	20	1.9	20	84	10	51	31	2	5	60	1.33
1857167--1857200	6	5.7	6	100	0	68	64	0	0	35	0.94
1865505--1865599	27	3.4	27	65	25	70	37	13	6	42	1.70
1865590--1865632	16	2.6	17	77	7	52	44	0	9	46	1.35
1865505--1865722	60	3.7	58	87	4	312	36	11	5	45	1.65
1865505--1865722	118	1.9	117	90	4	350	36	11	5	45	1.65
1865773--1865909	11	12.0	11	72	18	70	75	3	2	17	1.07
1865735--1865905	17	9.1	17	67	26	71	74	3	4	16	1.12
1865748--1865839	5	17.4	5	68	18	53	77	2	6	14	1.06
1865861--1865925	16	4.1	15	75	13	58	80	3	0	16	0.85
1866376--1866412	19	1.9	19	94	0	65	40	24	8	27	1.83
1866798--1866948	63	2.5	60	80	10	148	71	3	3	21	1.17
1866881--1866948	15	4.7	15	76	7	77	79	0	1	19	0.81
1866884--1866950	31	2.3	30	84	7	93	79	0	1	19	0.82
1866886--1866980	6	15.7	6	77	14	79	77	1	2	18	0.92
1867197--1867315	42	2.8	43	79	5	125	36	20	17	26	1.94
1867264--1867465	41	4.9	42	85	2	257	39	20	15	25	1.91
1867264--1867465	83	2.4	83	87	2	289	39	20	15	25	1.91
1867446--1867485	20	2.0	20	90	0	62	27	27	17	27	1.98
1867804--1867885	43	1.9	42	85	7	112	35	17	10	36	1.85
1869213--1869245	15	2.4	14	85	14	50	9	15	0	75	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1879414--1879688	58	4.7	58	82	9	360	36	13	5	45	1.65
1879414--1879687	117	2.3	116	90	5	426	36	13	5	45	1.65
1879734--1879860	22	5.8	21	68	13	60	73	3	3	19	1.13
1879732--1879786	18	3.1	18	78	21	53	78	1	3	16	0.98
1879742--1879793	11	5.1	10	77	9	52	80	1	3	13	0.93
1879744--1879800	17	3.2	17	80	5	51	78	1	5	14	0.99
1879740--1879810	27	2.6	28	74	17	76	76	1	5	16	1.05
1879823--1879867	4	11.8	4	81	9	58	75	2	0	22	0.91
1880628--1880686	22	2.7	21	84	10	66	66	6	5	22	1.36
1880770--1880845	9	8.4	9	76	16	68	75	0	1	23	0.89
1880770--1880842	12	5.6	12	80	12	65	75	0	1	23	0.88
1880773--1880848	19	4.3	17	79	14	82	76	0	1	22	0.86
1880794--1880845	3	16.7	3	81	15	61	71	0	0	28	0.87
1886622--1886679	21	2.7	21	79	12	73	50	0	0	50	1.00
1886622--1886678	15	4.1	13	80	14	60	50	0	0	49	1.00
1886845--1886872	2	14.0	2	100	0	56	50	0	0	50	1.00
1892696--1892729	17	2.0	17	88	0	50	23	0	5	70	1.09
1893126--1893176	22	2.5	22	87	9	72	50	0	1	47	1.12
1893166--1893218	26	2.0	26	82	7	63	56	1	0	41	1.10
1897130--1897251	42	2.9	41	81	6	129	57	6	2	33	1.38
1897129--1897270	21	6.7	21	75	8	101	55	7	3	33	1.44
1897317--1897397	21	4.0	20	75	9	83	60	9	1	28	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1897374--1897425	27	1.9	27	85	14	72	67	3	0	28	1.08
1897468--1897538	21	3.4	21	84	5	74	60	5	2	30	1.34
1897489--1897606	10	11.3	11	68	9	50	53	7	4	34	1.49
1897489--1897607	21	5.7	21	76	6	93	52	7	5	34	1.51
1897573--1897618	21	2.1	22	84	11	60	54	8	4	32	1.51
1897629--1897742	21	5.5	20	73	11	86	56	11	4	28	1.54
1897713--1897745	11	3.1	11	86	4	50	60	9	0	30	1.27
1899330--1899368	20	2.0	20	89	0	60	23	2	25	48	1.63
1900741--1900860	60	2.0	60	100	0	240	30	31	13	25	1.93
1904927--1904958	9	3.4	10	87	12	50	25	6	0	68	1.12
1917389--1917415	14	1.9	14	100	0	54	44	0	18	37	1.50
1921592--1921633	21	2.0	21	85	0	57	45	7	14	33	1.72
1926179--1926242	29	2.2	29	97	0	119	29	23	26	20	1.99
1937589--1937614	13	2.0	13	100	0	52	46	7	7	38	1.61
1940779--1941265	202	2.4	202	87	2	674	28	18	12	40	1.87
1941306--1941349	22	2.0	22	95	0	79	13	15	13	56	1.67
1943929--1943983	29	1.9	29	85	3	76	69	3	1	25	1.15
1944991--1945042	20	2.6	20	85	11	63	30	34	17	17	1.93
1945393--1945448	3	18.7	3	100	0	112	67	0	0	32	0.91
1946854--1946880	14	1.9	14	100	0	54	88	7	3	0	0.61
1955137--1955214	41	1.9	41	81	5	95	24	0	5	70	1.07
1957557--1957600	23	2.0	21	86	8	61	52	4	0	43	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1963204--1963246	17	2.5	17	96	0	77	11	27	6	53	1.63
1970314--1970343	2	15.0	2	100	0	60	50	0	0	50	1.00
1970343--1970384	2	21.0	2	100	0	84	0	0	50	50	1.00
1970521--1970598	28	2.8	28	88	2	111	38	15	14	32	1.87
1975286--1975318	15	2.2	15	94	0	57	36	18	6	39	1.75
1977209--1977462	121	2.1	125	80	8	288	26	18	14	40	1.89
1979818--1979869	14	3.5	14	74	23	52	73	1	1	23	1.04
1980096--1980143	22	2.2	22	81	3	53	58	6	2	33	1.35
1980882--1980938	20	2.9	20	97	2	107	31	31	15	21	1.94
1983847--1985011	582	2.0	581	97	0	2188	36	11	8	43	1.70
1992184--1992261	41	1.9	41	81	5	95	24	0	5	70	1.07
1998910--1998949	17	2.4	17	100	0	80	17	22	12	47	1.81
2006166--2006222	24	2.4	23	85	11	71	21	15	33	29	1.94
2006767--2006804	17	2.2	18	85	4	51	34	7	34	23	1.84
2013369--2013402	17	2.0	17	94	0	59	26	11	32	29	1.92
2015125--2015165	8	5.2	8	85	2	57	58	0	0	41	0.98
2015129--2015179	26	2.0	24	85	7	66	60	0	0	39	0.97
2015826--2015870	22	2.0	22	100	0	90	17	37	8	35	1.81
2021584--2021994	202	2.0	202	89	0	617	26	18	14	40	1.89
2026154--2026198	3	15.0	3	100	0	90	66	0	0	33	0.92
2038531--2038584	2	27.5	2	77	3	56	44	3	3	48	1.38
2046209--2046286	11	6.6	11	75	16	59	53	2	2	41	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2046179--2046249	14	5.0	14	73	10	63	52	2	5	39	1.40
2046209--2046305	22	4.2	21	76	18	70	54	3	3	39	1.32
2046256--2046303	23	2.1	22	84	3	60	60	4	2	33	1.27
2046401--2046441	20	2.1	20	86	4	57	56	0	0	43	0.99
2046538--2046620	28	3.0	28	80	8	89	57	0	0	42	0.98
2046573--2046627	28	2.0	28	92	0	92	52	0	0	47	1.00
2055062--2055102	18	2.3	18	86	0	55	51	7	0	41	1.30
2057074--2057108	18	1.9	18	88	0	52	42	5	8	42	1.59
2058373--2058419	22	2.1	22	84	0	58	46	2	8	42	1.46
2059374--2059528	74	2.1	72	87	2	220	40	15	3	41	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117