genome.fa.s90.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  87  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16950555--16950607	26	2.0	26	92	0	88	28	22	20	28	1.99
16952322--16952400	26	3.0	26	94	0	131	27	22	20	29	1.98
16955025--16955077	26	2.0	26	85	0	70	26	26	20	26	1.99
16951461--16960344	895	10.0	893	83	6	9946	25	24	23	25	2.00
16958533--16958583	26	2.0	26	92	0	84	31	25	13	29	1.94
16959421--16959473	26	2.0	26	100	0	106	26	26	20	26	1.99
16960286--16960338	26	2.0	26	92	0	88	26	28	18	26	1.98
16961993--16962045	26	2.0	26	100	0	106	26	26	20	26	1.99
16960367--16962435	895	2.3	895	86	2	2816	25	23	24	26	2.00
16962760--16962812	26	2.0	26	88	0	79	26	24	18	30	1.98
16963659--16963711	26	2.0	26	96	0	97	26	24	20	28	1.99
16964548--16964600	26	2.0	26	92	0	88	24	24	20	30	1.99
16962434--16972516	872	11.3	883	84	5	11559	25	24	24	25	2.00
16965435--16965490	26	2.2	26	96	0	103	28	23	19	28	1.98
16966346--16966398	26	2.0	26	100	0	106	26	26	20	26	1.99
16967230--16967282	26	2.0	26	92	0	88	28	22	22	26	1.99
16962434--16972516	890	11.3	870	82	6	10846	25	24	24	25	2.00
16968107--16968162	26	2.2	26	90	0	85	30	23	19	26	1.98
16968987--16969039	26	2.0	26	85	0	70	30	26	15	28	1.96
16971656--16971705	26	1.9	26	95	0	91	24	28	18	30	1.97
16973394--16973446	26	2.0	26	96	0	97	26	28	20	24	1.99
16972519--16978614	898	6.8	901	84	4	7487	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16977428--16977485	26	2.2	26	81	3	62	53	12	8	25	1.66
16978589--16978640	25	2.0	26	92	3	88	32	25	13	28	1.93
16980342--16980392	26	2.0	26	92	0	84	29	23	15	31	1.95
16979463--17001363	905	24.1	901	78	9	16596	25	24	24	25	2.00
16982104--16982153	26	1.9	26	91	0	82	28	24	22	26	1.99
16983002--16983080	26	3.0	26	92	3	124	26	26	18	27	1.98
16983771--16984142	159	2.3	159	84	1	460	20	28	29	20	1.98
16984774--16985170	159	2.5	159	84	2	501	20	27	29	22	1.98
16985975--16986033	26	2.3	26	85	5	86	27	23	20	28	1.99
16986872--16986950	26	3.0	26	90	0	131	25	25	20	29	1.99
16987295--16987774	251	1.9	251	88	2	732	40	18	16	24	1.91
16988847--16988899	26	2.0	26	92	0	88	26	26	22	24	2.00
16994088--16994140	26	2.0	26	96	0	97	28	26	18	26	1.98
16995892--16995944	26	2.0	26	88	0	79	30	24	16	28	1.97
16998595--16998647	26	2.0	26	96	0	97	26	24	20	28	1.99
16993225--17006410	900	14.8	899	79	7	12529	25	24	24	25	2.00
16993225--17001371	899	9.1	900	87	2	10704	25	24	24	25	2.00
17000395--17000447	26	2.0	26	88	0	79	32	26	11	30	1.91
17001290--17001339	26	1.9	26	100	0	100	24	28	20	28	1.99
17001131--17001555	184	2.3	184	88	2	620	19	28	29	22	1.98
17001474--17001526	26	2.0	26	100	0	106	26	26	20	26	1.99
17003091--17003143	26	2.0	26	92	0	88	24	28	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17003986--17004038	26	2.0	26	96	0	97	26	24	20	28	1.99
17004865--17004917	26	2.0	26	88	0	79	28	22	18	30	1.98
17006390--17006446	25	2.3	25	90	6	89	29	24	21	24	1.99
17009379--17009404	8	3.2	8	100	0	52	0	61	26	11	1.30
17010457--17010509	26	2.0	26	88	0	79	30	24	18	26	1.98
17008705--17025202	902	18.5	885	84	5	18106	25	24	23	25	2.00
17012258--17012328	26	2.7	26	93	0	115	29	21	18	30	1.97
17014946--17014998	26	2.0	26	88	0	79	26	28	20	24	1.99
17017655--17017707	26	2.0	26	92	0	88	28	24	18	28	1.98
17018543--17018595	26	2.0	26	92	0	88	28	24	18	28	1.98
17019434--17019486	26	2.0	26	100	0	106	26	26	20	26	1.99
17020290--17020342	26	2.0	26	88	0	79	26	22	18	32	1.97
17021192--17021244	26	2.0	26	96	0	97	26	26	18	28	1.98
17023880--17023932	26	2.0	26	96	0	97	26	24	20	28	1.99
17024013--17024045	11	3.0	11	100	0	66	18	27	36	18	1.94
17025527--17025579	26	2.0	26	85	0	70	26	24	16	32	1.97
17026426--17026478	26	2.0	26	96	0	97	26	24	20	28	1.99
17028307--17028339	11	3.0	11	95	0	57	18	30	36	15	1.91
17029059--17029111	26	2.0	26	88	0	79	26	30	18	24	1.98
17029957--17030004	25	1.9	25	91	0	78	27	27	18	27	1.98
17028373--17032567	893	4.7	898	85	3	5485	26	24	23	25	2.00
17031733--17031782	26	1.9	26	100	0	100	24	28	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17033468--17033520	26	2.0	26	92	0	88	26	22	22	28	1.99
17034375--17034427	26	2.0	26	88	0	79	26	26	18	28	1.98
17035267--17035319	26	2.0	26	92	0	88	28	24	18	28	1.98
17036157--17036209	26	2.0	26	96	0	97	26	24	20	28	1.99
17032594--17055289	901	25.0	900	78	9	21271	25	24	24	25	2.00
17039545--17039941	159	2.5	159	84	1	490	19	27	29	23	1.98
17040760--17040818	26	2.3	26	85	5	86	27	23	20	28	1.99
17039886--17055289	900	17.0	897	80	8	15651	25	24	24	25	2.00
17041660--17041738	26	3.0	26	90	0	131	25	25	20	29	1.99
17048069--17048121	26	2.0	26	96	0	97	28	26	18	26	1.98
17049874--17049926	26	2.0	26	92	7	90	30	26	16	26	1.97
17052576--17052627	26	2.0	26	96	0	95	30	21	19	28	1.97
17055082--17055447	158	2.3	158	86	3	486	17	28	30	24	1.97
17055421--17055473	26	2.0	26	100	0	106	26	26	20	26	1.99
17055447--17056939	725	2.1	717	87	3	2149	25	24	23	25	2.00
17057950--17058002	26	2.0	26	96	0	97	26	24	20	28	1.99
17056285--17059488	881	3.6	878	86	4	4083	26	24	23	25	2.00
17058831--17058883	26	2.0	26	96	0	97	26	24	20	28	1.99
17061221--17061251	4	7.8	4	92	0	53	0	70	25	3	1.02
17061221--17061254	12	2.8	12	95	0	59	0	67	26	5	1.13
17061887--17061917	4	7.8	4	92	0	53	0	70	25	3	1.02
17061887--17061920	12	2.8	12	95	0	59	0	67	26	5	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17062101--17062153	26	2.0	26	96	0	97	28	26	18	26	1.98
17063871--17063923	26	2.0	26	96	0	97	28	26	18	26	1.98
17062127--17067801	867	6.5	869	83	5	6883	25	24	23	25	2.00
17067355--17067405	26	2.0	26	92	0	84	27	29	13	29	1.94
17068651--17068703	26	2.0	26	92	0	88	30	26	16	26	1.97
17069543--17069592	25	2.0	26	92	4	84	32	28	14	26	1.94
17072200--17072252	26	2.0	26	92	0	88	28	26	16	28	1.97
17067798--17077480	884	10.9	899	87	3	12675	25	24	24	25	2.00
17073993--17074045	26	2.0	26	96	0	97	28	26	18	26	1.98
17074876--17074928	26	2.0	26	92	0	88	24	26	18	30	1.98
17077665--17077717	26	2.0	26	89	7	81	26	26	16	30	1.97
17079245--17079297	26	2.0	26	100	0	106	26	26	20	26	1.99
17078377--17080239	895	2.1	893	88	1	2761	25	24	25	24	2.00
17080713--17080764	26	2.0	26	88	3	79	25	23	23	28	1.99
17081849--17081901	26	2.0	26	92	0	88	26	22	20	30	1.98
17082741--17082793	26	2.0	26	85	7	72	26	24	18	30	1.98
17083643--17083695	26	2.0	26	88	0	79	30	28	16	24	1.97
17084494--17084546	26	2.0	26	92	0	88	30	26	16	26	1.97
17085397--17085448	26	2.0	25	88	3	77	26	25	17	30	1.97
17085824--17085875	26	2.0	26	92	3	88	26	23	21	28	1.99
17085334--17086136	427	1.9	427	87	2	1202	19	27	27	24	1.99
17086541--17086908	159	2.3	159	82	4	422	21	28	27	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17086882--17086933	26	2.0	25	88	3	77	26	21	19	32	1.97
17088160--17088212	26	2.0	26	92	0	88	28	26	16	28	1.97
17087928--17093464	899	6.1	898	84	5	6819	25	24	24	25	2.00
17090857--17090909	26	2.0	26	96	0	97	28	26	18	26	1.98
17092710--17094176	712	2.1	711	87	5	2076	26	24	23	25	2.00
17095164--17095216	26	2.0	26	92	0	88	28	24	18	28	1.98
17094288--17100574	904	7.0	899	85	4	7826	25	24	24	25	2.00
17096065--17096117	26	2.0	26	92	0	88	26	26	20	26	1.99
17097849--17097899	26	2.0	26	100	0	102	23	23	25	27	2.00
17099633--17099685	26	2.0	26	96	0	97	24	26	22	26	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117