genome.fa.s90.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  112  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20151486--20151751	135	2.0	135	85	5	360	21	27	28	21	1.99
20151805--20151857	26	2.0	26	89	7	81	35	24	13	26	1.92
20151616--20154702	898	3.4	898	87	2	4263	24	24	25	25	2.00
20153607--20153659	26	2.0	26	88	0	79	28	20	20	30	1.98
20154502--20154554	26	2.0	26	92	0	88	28	24	20	26	1.99
20156778--20156830	26	2.0	26	92	0	88	28	26	16	28	1.97
20155023--20157829	898	3.1	889	82	7	2825	25	24	24	25	2.00
20157682--20157747	26	2.5	26	82	0	96	31	21	15	31	1.94
20158399--20158451	26	2.0	26	96	0	97	26	24	20	28	1.99
20159294--20159346	26	2.0	26	92	0	88	26	22	24	26	2.00
20157845--20163504	899	6.4	896	84	4	7051	26	24	23	25	2.00
20161079--20161128	26	1.9	26	91	0	82	22	26	20	32	1.98
20161975--20162027	26	2.0	26	92	0	88	30	26	16	26	1.97
20165213--20165265	26	2.0	26	92	0	88	26	24	18	30	1.98
20167091--20167142	26	2.0	26	96	0	95	28	26	17	26	1.97
20166279--20168484	876	2.5	875	84	6	2744	26	24	23	25	2.00
20168766--20168818	26	2.0	26	96	0	97	28	24	20	26	1.99
20170238--20170290	26	2.0	26	96	0	97	28	26	18	26	1.98
20168941--20172174	906	3.6	897	83	5	3812	25	25	23	24	2.00
20172039--20172091	26	2.0	26	100	0	106	26	26	20	26	1.99
20172604--20172656	26	2.0	26	92	0	88	24	24	22	28	2.00
20172789--20172841	26	2.0	26	96	0	97	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20173686--20173738	26	2.0	26	92	0	88	30	26	16	26	1.97
20178178--20178470	58	5.0	58	86	5	410	34	12	7	44	1.71
20178179--20178467	118	2.5	117	89	4	429	34	13	7	44	1.71
20178478--20178507	14	2.1	14	93	0	51	76	0	6	16	0.99
20178473--20178512	14	2.5	17	73	23	50	75	0	10	15	1.05
20178573--20178632	8	7.2	8	77	18	52	81	5	1	11	0.91
20178962--20179011	20	2.5	20	86	0	64	22	18	18	42	1.90
20179574--20179658	23	3.4	24	76	9	64	67	2	3	27	1.19
20179622--20179671	24	2.1	23	82	10	57	60	2	4	34	1.27
20179671--20179747	24	3.2	23	75	14	66	68	3	1	25	1.14
20179964--20180030	1	67.0	1	72	0	53	0	0	13	86	0.57
20179964--20180015	7	7.6	7	87	8	72	0	0	13	86	0.57
20180037--20180335	42	7.1	42	92	3	462	35	23	16	24	1.95
20181587--20181629	17	2.5	17	88	0	59	4	18	0	76	0.95
20181584--20181650	7	9.1	7	78	16	57	2	19	0	77	0.89
20181582--20181643	22	2.8	21	85	7	79	3	17	0	79	0.87
20181581--20181657	17	4.4	17	74	11	57	5	18	0	76	0.96
20185519--20185810	58	5.0	58	82	6	376	35	12	7	44	1.71
20185519--20185807	117	2.5	117	88	5	415	35	12	7	44	1.72
20185813--20185872	29	2.1	27	82	17	70	75	1	8	15	1.12
20185860--20185899	17	2.4	16	84	8	53	72	0	5	22	1.04
20186940--20187089	27	5.9	24	67	27	62	66	2	2	28	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20186941--20187077	17	7.9	17	67	25	67	66	2	2	29	1.15
20186941--20187077	14	9.4	14	66	24	52	66	2	2	29	1.15
20187943--20187995	26	2.0	26	96	0	97	28	26	18	26	1.98
20188848--20188900	26	2.0	26	100	0	106	26	26	20	26	1.99
20187207--20189776	903	2.8	905	89	1	3872	25	25	23	25	2.00
20190486--20190541	26	2.2	26	93	0	94	30	25	17	26	1.97
20190807--20192145	746	1.8	738	86	2	1930	27	23	23	25	2.00
20192119--20192170	26	2.0	26	92	3	88	26	25	21	26	1.99
20193623--20193675	26	2.0	26	88	0	79	28	22	20	28	1.99
20194359--20194411	26	2.0	26	100	0	106	26	26	20	26	1.99
20195058--20195110	26	2.0	26	96	0	97	28	24	20	26	1.99
20195946--20195998	26	2.0	26	96	0	97	32	26	16	24	1.97
20196842--20196894	26	2.0	26	92	0	88	30	22	16	30	1.96
20197735--20197787	26	2.0	26	96	0	97	26	28	20	24	1.99
20198639--20198691	26	2.0	26	85	0	70	30	22	16	30	1.96
20194550--20204754	904	11.4	900	86	3	13241	25	24	24	25	2.00
20200425--20200475	26	2.0	26	92	0	84	27	23	15	33	1.95
20201322--20201374	26	2.0	26	85	0	70	30	20	18	30	1.97
20202221--20202273	26	2.0	26	88	0	79	28	24	16	30	1.97
20203109--20203161	26	2.0	26	96	0	97	26	24	20	28	1.99
20203990--20204042	26	2.0	26	88	0	79	28	20	18	32	1.97
20204728--20204780	26	2.0	26	96	0	97	24	26	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20205454--20205504	26	2.0	26	96	0	93	27	27	15	29	1.96
20206342--20206394	26	2.0	26	92	0	88	28	26	16	28	1.97
20207199--20207254	26	2.2	26	96	0	103	30	25	17	26	1.97
20208070--20208122	26	2.0	26	88	0	79	28	28	16	26	1.97
20208972--20209024	26	2.0	26	96	0	97	28	26	18	26	1.98
20209427--20212268	901	3.2	896	88	1	4036	26	24	23	25	2.00
20211619--20211671	26	2.0	26	85	0	70	28	20	20	30	1.98
20213337--20213392	26	2.2	26	93	0	94	28	25	17	28	1.98
20215140--20215192	26	2.0	26	92	0	88	28	22	22	26	1.99
20212465--20215318	901	3.2	888	86	4	3883	25	24	24	24	2.00
20216688--20216740	26	2.0	26	96	0	97	26	24	20	28	1.99
20215316--20222335	894	7.9	895	84	6	8228	25	25	23	25	2.00
20218482--20218534	26	2.0	26	92	0	88	26	24	22	26	2.00
20220256--20220308	26	2.0	26	100	0	106	26	26	20	26	1.99
20220459--20220490	13	2.5	13	89	0	55	25	18	34	21	1.96
20221174--20221249	26	2.9	26	92	0	125	26	25	19	28	1.99
20222066--20222118	26	2.0	26	88	0	79	32	26	15	26	1.95
20222350--20222701	159	2.2	159	86	1	472	19	27	28	23	1.99
20222675--20222727	26	2.0	26	92	0	88	26	26	20	26	1.99
20223566--20223617	25	2.0	26	92	3	88	28	25	19	26	1.98
20222492--20225238	890	3.1	873	85	4	3279	25	25	23	25	2.00
20226996--20227048	26	2.0	26	96	0	97	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20228725--20228777	26	2.0	26	92	0	88	26	22	20	30	1.98
20233135--20233187	26	2.0	26	96	0	97	32	26	15	26	1.95
20229639--20245338	899	17.8	904	83	6	17471	25	24	24	25	2.00
20234041--20234093	26	2.0	26	100	0	106	26	26	20	26	1.99
20234940--20234992	26	2.0	26	88	0	79	30	24	16	28	1.97
20237608--20237660	26	2.0	26	96	0	97	28	26	18	26	1.98
20238513--20238563	26	2.0	26	92	7	86	25	27	19	27	1.99
20239412--20239464	26	2.0	26	92	0	88	30	26	16	26	1.97
20228586--20245365	852	19.0	898	83	6	18206	25	24	24	25	2.00
20242863--20242915	26	2.0	26	92	0	88	28	24	20	26	1.99
20246119--20246171	26	2.0	26	88	0	79	28	22	20	28	1.99
20247022--20247074	26	2.0	26	89	7	81	32	26	13	28	1.93
20245620--20251358	892	6.4	889	80	9	5976	26	24	23	25	2.00
20248777--20248829	26	2.0	26	96	0	97	26	24	20	28	1.99
20247801--20251374	897	4.0	886	83	8	4134	25	24	23	26	2.00
20251408--20257246	903	6.5	899	85	3	7542	26	24	23	25	2.00
20256616--20256666	26	2.0	26	84	0	66	33	23	13	29	1.93
20257311--20257365	26	2.1	26	96	0	101	25	25	21	27	2.00
20258214--20258266	26	2.0	26	96	0	97	28	26	18	26	1.98
20259116--20259171	26	2.2	26	96	0	103	30	25	17	26	1.97
20260028--20260080	26	2.0	26	96	0	97	32	26	15	26	1.95
20261840--20261895	26	2.2	26	93	3	96	30	26	16	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20268079--20268131	26	2.0	26	88	0	79	30	24	16	28	1.97
20269699--20270066	159	2.3	158	83	1	432	18	27	28	24	1.98
20273531--20273583	26	2.0	26	96	0	97	28	26	18	26	1.98
20274427--20274479	26	2.0	26	96	0	97	26	24	20	28	1.99
20275314--20275370	26	2.2	26	93	0	96	31	26	15	26	1.96
20272419--20278448	889	6.8	884	84	5	6806	25	24	24	25	2.00
20277958--20278036	26	3.0	26	88	0	122	27	26	17	27	1.98
20278020--20278902	454	1.9	459	88	3	1321	22	23	26	27	1.99
20279344--20279396	26	2.0	26	96	0	97	28	26	18	26	1.98
20281109--20281161	26	2.0	26	92	0	88	30	26	16	26	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117