genome.fa.s90.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  29  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7534871--7534922	25	2.1	25	85	3	70	51	0	5	42	1.25
7538204--7538230	11	2.5	11	100	0	54	62	14	0	22	1.31
7543358--7543463	51	2.1	48	83	8	124	22	33	10	33	1.88
7548786--7549309	260	2.0	262	95	1	937	29	17	19	33	1.95
7549518--7549549	2	16.0	2	100	0	64	50	0	50	0	1.00
7553500--7553544	5	9.6	5	76	13	51	35	2	0	62	1.08
7553495--7553553	24	2.4	23	83	8	73	37	1	0	61	1.07
7553495--7553556	25	2.5	25	76	16	67	37	3	0	59	1.13
7554167--7554210	9	4.8	9	77	5	52	47	2	0	50	1.13
7554169--7554215	19	2.5	19	85	0	58	51	2	0	46	1.13
7554163--7554229	28	2.4	25	75	20	62	47	2	0	49	1.16
7554555--7554601	22	2.1	22	84	7	60	53	6	2	38	1.39
7555932--7555991	27	2.3	26	85	2	75	65	0	0	35	0.93
7555935--7555991	15	3.9	15	75	15	57	64	0	0	35	0.93
7556219--7556249	15	2.1	15	93	0	53	48	0	3	48	1.17
7566993--7567036	19	2.3	18	85	11	61	31	0	0	68	0.90
7572622--7572646	2	12.5	2	100	0	50	48	0	0	52	1.00
7572883--7572971	29	3.2	27	78	10	90	38	4	0	57	1.19
7572925--7573004	25	3.0	25	81	7	70	40	3	1	55	1.26
7573748--7573946	83	2.4	83	80	5	197	22	9	41	27	1.83
7575332--7575578	40	6.2	40	76	2	190	34	12	18	34	1.89
7577785--7577828	13	3.4	13	81	12	54	4	15	2	77	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7577793--7577846	12	4.5	12	75	9	56	3	16	1	77	1.00
7577813--7577855	21	2.0	23	86	9	63	9	18	0	72	1.11
7602802--7602833	6	5.3	6	96	0	55	28	0	71	0	0.86
7603316--7603390	32	2.3	32	80	8	82	53	1	1	44	1.17
7603332--7603392	25	2.3	26	83	5	70	52	1	1	44	1.20
7611272--7611311	7	5.7	7	88	11	64	0	25	0	75	0.81
7616113--7616174	25	2.6	23	80	10	70	45	0	1	53	1.10
7616113--7616174	26	2.6	24	80	10	65	45	0	1	53	1.10
7616386--7616427	14	3.1	14	79	6	50	61	0	0	38	0.96
7619545--7619577	15	2.2	15	94	0	57	45	24	9	21	1.80
7619740--7619850	58	1.9	59	88	1	170	39	18	18	23	1.92
7620705--7620758	21	2.6	21	91	8	85	50	0	0	50	1.00
7634155--7634205	18	2.7	18	85	11	59	49	13	9	27	1.74
7634391--7634452	24	2.6	24	85	7	90	53	9	3	33	1.50
7634651--7634744	20	4.7	20	86	0	116	51	9	8	30	1.65
7634651--7634762	40	2.8	40	81	1	125	51	10	7	30	1.63
7634769--7634813	16	2.8	16	79	0	54	55	6	6	31	1.52
7634783--7634843	20	3.3	19	86	10	83	47	11	8	32	1.69
7636556--7636610	22	2.5	22	85	5	76	41	14	16	27	1.87
7637715--7637941	72	3.1	72	84	6	283	36	8	5	49	1.58
7641579--7641656	30	2.6	30	87	4	104	37	10	0	52	1.36
7642784--7642820	8	4.3	9	89	3	51	8	0	91	0	0.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7648081--7648114	2	17.0	2	100	0	68	50	0	0	50	1.00
7667807--7667841	3	11.7	3	93	0	61	31	0	2	65	1.07
7671516--7671549	2	17.0	2	87	0	50	50	0	0	50	1.00
7677497--7677528	15	2.1	15	100	0	64	56	12	18	12	1.67
7679530--7679569	2	20.0	2	100	0	80	50	0	0	50	1.00
7680210--7680267	29	1.9	30	86	6	82	63	1	1	32	1.14
7683756--7683805	22	2.3	21	79	3	55	48	8	8	36	1.62
7683778--7683891	22	5.2	22	77	6	88	50	5	8	35	1.56
7683831--7683898	22	3.1	22	87	4	84	52	2	7	36	1.44
7683849--7683925	22	3.5	22	76	15	61	54	2	7	35	1.43
7683912--7683960	22	2.2	22	82	13	57	63	10	4	22	1.43
7684007--7684127	22	5.5	22	82	2	136	52	4	9	33	1.55
7684007--7684127	44	2.8	44	84	0	170	52	4	9	33	1.55
7684492--7684520	7	4.1	7	100	0	58	72	0	0	27	0.85
7684512--7684570	21	2.7	22	82	15	70	54	6	6	32	1.53
7684512--7684613	11	9.1	11	66	18	50	52	4	7	34	1.52
7684531--7684584	22	2.5	21	82	8	65	50	5	7	37	1.54
7684678--7684736	22	2.7	22	82	10	75	47	8	10	33	1.68
7684979--7685278	22	13.5	22	73	9	162	46	8	7	38	1.61
7684975--7685235	66	3.9	65	74	9	209	47	7	6	37	1.58
7685492--7685592	52	1.9	52	100	0	202	49	5	7	36	1.56
7685585--7685637	22	2.4	22	81	6	63	47	5	9	37	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7685689--7685758	22	3.3	22	74	8	63	48	10	8	32	1.67
7685703--7685769	22	3.1	21	75	12	57	44	11	8	34	1.73
7685786--7685875	22	4.1	22	80	5	83	45	11	4	38	1.60
7685767--7685877	44	2.5	44	82	0	105	45	9	4	40	1.58
7685842--7685892	15	3.4	15	81	5	59	50	9	0	39	1.35
7685842--7685914	37	2.0	37	86	0	101	52	12	1	34	1.48
7685878--7685933	22	2.5	22	79	0	67	51	12	5	30	1.61
7686179--7686221	22	2.0	22	85	0	59	46	2	4	46	1.36
7688063--7688099	2	18.5	2	100	0	74	48	0	0	51	1.00
7699700--7699732	17	1.9	18	88	11	52	60	0	24	15	1.35
7701522--7701572	24	2.1	25	88	3	77	33	7	13	45	1.73
7703659--7703746	39	2.3	39	83	0	113	19	0	57	22	1.40
7704246--7704295	25	1.9	27	88	8	77	50	2	8	40	1.43
7708208--7708262	18	2.9	18	75	8	56	29	34	3	32	1.75
7708212--7708254	21	2.0	21	86	0	59	25	39	2	32	1.69
7708233--7708314	18	4.7	18	69	14	64	34	28	4	32	1.78
7708698--7708728	6	5.2	6	100	0	62	48	0	0	51	1.00
7712109--7712179	34	2.1	34	100	0	142	22	19	15	42	1.89
7713050--7713124	34	2.2	35	80	4	89	34	12	14	38	1.83
7713067--7713132	34	1.9	34	93	0	114	31	13	13	40	1.84
7727294--7727333	13	3.3	12	86	6	55	52	2	0	45	1.14
7727388--7727446	21	2.6	24	79	15	72	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7727395--7727446	20	2.5	21	79	17	63	46	0	0	53	1.00
7727465--7727507	19	2.3	19	84	8	52	62	2	0	34	1.08
7732250--7732279	15	1.9	16	93	6	53	63	3	0	33	1.11
7738768--7738802	3	11.7	3	100	0	70	31	0	0	68	0.90
7738833--7738874	17	2.5	17	88	7	59	73	2	4	19	1.12
7739985--7740030	24	1.9	24	86	0	65	13	6	36	43	1.69
7740550--7740661	37	3.2	34	77	16	97	75	7	2	15	1.14
7740610--7740668	6	9.7	6	75	14	50	77	3	1	16	0.98
7740553--7740655	30	3.4	28	75	21	84	74	7	2	14	1.15
7740603--7740668	19	3.4	18	82	15	71	77	4	1	16	1.01
7741116--7741190	32	2.3	33	86	2	98	52	10	13	24	1.72
7741530--7741572	22	2.0	22	85	0	59	23	11	25	39	1.88
7745274--7745317	17	2.7	17	89	6	65	68	2	4	25	1.20
7750825--7750876	20	2.6	20	78	0	59	75	3	1	19	1.06
7751453--7751484	2	16.0	2	100	0	64	50	0	0	50	1.00
7752841--7752886	14	3.4	14	85	8	60	76	4	0	19	0.96
7753265--7753323	24	2.6	22	79	12	66	18	1	6	72	1.15
7754736--7754786	17	3.0	17	80	5	50	62	0	0	37	0.95
7756537--7756584	14	3.2	16	80	16	59	45	2	4	47	1.33
7757224--7757265	16	2.7	16	82	17	61	30	2	0	66	1.04
7757812--7757875	25	2.4	27	73	19	64	35	3	3	57	1.30
7769073--7769105	16	2.1	16	88	11	50	30	3	0	66	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7771204--7771235	2	16.5	2	93	6	57	46	0	0	53	1.00
7775667--7775705	20	2.0	20	90	5	62	35	23	0	41	1.55
7777142--7777188	15	3.1	14	84	9	58	80	2	0	17	0.80
7777156--7777187	9	3.4	9	91	8	55	81	0	0	18	0.70
7777142--7777187	19	2.4	20	89	7	69	80	2	0	17	0.81
7777564--7777623	29	2.1	29	80	0	66	60	16	3	20	1.50
7779272--7779304	15	2.2	15	94	0	57	33	3	0	63	1.10
7781650--7781682	17	2.1	16	88	11	50	39	21	9	30	1.84
7785992--7786067	30	2.5	30	81	8	91	43	15	0	40	1.47
7788266--7788298	17	2.1	16	88	11	50	39	21	9	30	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117