genome.fa.s90.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  59  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13132227--13132266	16	2.4	16	88	12	55	72	0	7	20	1.08
13132955--13132995	14	2.6	16	74	18	50	58	4	0	36	1.20
13143409--13143471	30	2.2	28	83	8	74	38	1	1	58	1.17
13143863--13143903	8	5.1	8	87	0	55	60	2	2	34	1.23
13143860--13143912	21	2.5	20	80	14	54	64	1	1	32	1.15
13143871--13143914	18	2.6	16	89	7	61	65	2	0	31	1.05
13144740--13144769	2	15.0	2	100	0	60	50	0	0	50	1.00
13151368--13151407	20	2.0	21	90	5	64	42	20	12	25	1.86
13156284--13156324	20	2.1	20	82	13	50	58	14	7	19	1.59
13158259--13158324	34	1.9	34	93	0	114	42	15	6	36	1.71
13160052--13160113	27	2.2	28	82	2	81	69	4	4	20	1.26
13160578--13160620	21	2.0	21	86	9	59	41	0	2	55	1.12
13162737--13162801	18	3.6	18	74	12	60	15	0	9	75	1.04
13162899--13162954	19	2.8	21	71	20	55	26	7	8	57	1.55
13164641--13165219	139	4.2	139	84	4	672	26	13	11	48	1.77
13164644--13165160	274	1.9	269	83	3	640	27	14	10	47	1.77
13166673--13166719	8	5.5	8	77	22	51	80	0	14	4	0.85
13166673--13166725	26	2.0	26	89	7	81	79	0	15	5	0.91
13167777--13167920	50	2.9	50	85	3	182	31	11	15	41	1.82
13167874--13168049	70	2.5	70	81	1	174	29	13	15	41	1.85
13168845--13169026	42	4.2	41	70	22	113	31	12	13	42	1.82
13168868--13169125	134	1.9	133	79	5	288	31	11	13	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13170070--13170131	20	3.3	19	78	15	74	8	1	17	72	1.17
13170508--13170537	13	2.4	13	94	5	53	6	6	0	86	0.70
13170673--13170784	49	2.4	45	80	12	127	24	8	9	58	1.57
13170686--13170735	15	3.5	15	73	13	52	24	8	10	58	1.57
13170685--13170783	49	2.0	48	86	5	137	24	8	9	58	1.56
13170731--13170781	26	1.9	26	88	11	77	25	7	7	58	1.53
13170685--13170781	22	4.0	23	79	15	88	24	8	9	57	1.57
13173369--13173414	22	2.0	22	87	4	65	63	13	6	17	1.50
13174695--13174725	15	2.1	15	94	5	55	22	19	9	48	1.78
13176137--13176431	123	2.4	122	82	6	321	40	11	13	34	1.80
13176169--13176431	123	2.1	122	84	4	334	41	12	13	32	1.82
13176725--13176810	46	1.9	45	81	9	104	39	12	9	38	1.76
13176580--13176919	168	2.0	167	84	1	439	40	12	12	34	1.81
13176935--13176962	13	2.2	13	100	0	56	28	0	14	57	1.38
13177145--13177455	62	5.0	61	73	13	206	35	16	16	32	1.91
13180172--13180205	15	2.1	17	89	10	54	61	0	23	14	1.33
13187013--13187060	21	2.3	21	78	7	53	31	2	2	64	1.16
13187331--13187404	26	2.8	27	80	8	80	37	1	22	37	1.63
13194801--13194832	3	10.7	3	100	0	64	65	0	0	34	0.93
13194899--13194939	12	3.4	12	86	0	55	31	48	9	9	1.69
13195901--13195944	23	2.0	23	86	4	63	38	0	11	50	1.39
13196304--13196344	17	2.4	18	92	8	68	48	21	2	26	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13196315--13196362	17	2.8	17	87	0	60	45	18	2	33	1.61
13196614--13196646	17	2.0	17	88	5	50	42	12	3	42	1.57
13198451--13198485	16	2.1	18	89	10	56	60	0	5	34	1.21
13199227--13199267	19	2.1	19	86	4	55	29	2	4	63	1.28
13199307--13199448	61	2.3	61	87	4	207	46	6	7	40	1.56
13209628--13209681	26	2.1	26	96	0	99	37	25	11	25	1.89
13217918--13217948	3	10.7	3	93	6	55	70	0	0	29	0.87
13219741--13220016	139	2.0	140	89	2	430	38	10	13	36	1.80
13223110--13223150	19	2.1	20	86	13	59	53	4	2	39	1.35
13223249--13223326	22	3.5	22	85	5	95	66	1	6	25	1.23
13223220--13223329	44	2.6	43	78	12	120	63	2	8	25	1.35
13223257--13223326	22	3.2	22	89	2	106	65	1	7	25	1.26
13223495--13223524	15	1.9	16	93	6	53	26	6	0	66	1.16
13223753--13223802	20	2.5	20	83	0	64	36	0	8	56	1.29
13223828--13223910	38	2.2	38	80	10	98	15	7	3	73	1.19
13223907--13223970	28	2.3	28	86	5	85	32	4	4	57	1.40
13224042--13224099	28	2.1	28	80	6	64	25	8	3	62	1.40
13231430--13231498	23	3.0	23	74	8	59	33	1	2	62	1.19
13232951--13232989	18	2.1	19	90	4	62	51	2	0	46	1.14
13232959--13233100	38	3.8	35	80	11	140	47	2	3	46	1.31
13232959--13233081	36	3.2	38	80	11	137	48	1	3	46	1.28
13233525--13233574	24	2.1	24	100	0	100	22	4	34	40	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13238999--13239184	52	3.6	52	81	2	221	29	18	5	46	1.71
13239511--13239595	31	2.7	31	85	7	118	28	20	16	35	1.94
13240073--13240281	52	4.0	52	81	8	246	28	17	6	47	1.73
13242309--13242342	15	2.4	14	85	9	50	14	11	5	67	1.39
13242798--13242837	11	3.6	11	86	0	62	20	0	30	50	1.49
13242864--13243020	52	3.0	51	78	3	172	43	6	20	29	1.76
13247933--13247977	13	3.6	12	87	6	63	11	2	2	84	0.80
13248210--13248255	20	2.4	19	83	16	60	41	2	0	56	1.11
13248561--13248609	25	2.0	25	83	0	62	6	12	2	79	0.99
13248546--13248654	40	2.8	40	80	10	113	3	13	1	80	0.92
13248574--13248645	13	5.6	12	81	15	81	0	15	0	84	0.62
13248581--13248644	7	9.6	7	86	6	89	0	15	0	84	0.63
13248574--13248654	26	3.2	26	77	19	82	1	13	1	83	0.76
13248721--13248745	7	3.6	7	100	0	50	24	0	0	76	0.80
13249052--13249104	22	2.3	22	83	6	61	5	9	3	81	0.98
13249074--13249112	19	2.1	19	90	0	60	7	7	2	82	0.94
13249079--13249118	19	2.2	19	86	4	55	10	7	2	80	1.00
13259268--13259319	8	6.6	8	80	6	54	82	0	0	17	0.66
13259267--13259313	10	4.6	10	77	12	51	82	0	0	17	0.66
13261243--13261267	11	2.3	11	100	0	50	8	12	0	80	0.92
13263200--13263244	17	2.7	15	81	18	54	80	0	2	17	0.82
13265670--13265715	3	15.3	3	100	0	92	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13268944--13268985	21	2.0	20	86	4	57	26	19	14	40	1.89
13269331--13269391	21	2.5	26	70	25	69	37	9	11	40	1.75
13269345--13269410	21	3.0	21	76	6	69	34	10	10	43	1.74
13269317--13269428	47	2.4	44	83	7	134	34	8	14	41	1.77
13269355--13269494	67	2.1	66	83	1	172	34	8	15	41	1.78
13269556--13269610	16	3.1	17	72	23	58	41	3	16	38	1.66
13269574--13269613	21	1.9	21	89	0	62	37	2	15	45	1.59
13269590--13269713	21	5.7	21	74	6	77	35	9	13	41	1.78
13269595--13269774	23	8.1	22	69	9	89	38	9	11	41	1.73
13269353--13269747	217	1.8	218	84	2	542	35	9	14	40	1.78
13269422--13269910	45	11.2	44	71	11	247	35	8	14	41	1.77
13269656--13269896	89	2.7	88	80	5	261	34	8	14	42	1.76
13269795--13269910	22	5.3	23	70	11	73	31	7	16	44	1.76
13269993--13270137	36	4.0	36	78	0	155	26	14	12	46	1.80
13269993--13270128	72	1.9	72	85	0	191	26	14	12	46	1.80
13269995--13270143	18	8.2	18	72	9	106	25	13	12	48	1.78
13270169--13270222	22	2.5	22	82	5	67	37	9	7	46	1.64
13273341--13273379	20	2.0	20	90	10	62	58	2	25	12	1.47
13274376--13274436	14	4.4	14	77	6	61	42	26	3	27	1.71
13274376--13274441	28	2.4	28	79	5	71	42	27	3	27	1.70
13274433--13274557	19	6.7	19	79	8	132	40	41	2	15	1.60
13274433--13274540	57	1.9	56	86	5	155	39	42	2	14	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13275689--13275722	14	2.4	14	85	0	50	47	26	0	26	1.53
13275717--13275759	18	2.3	19	88	4	61	37	46	6	9	1.63
13275717--13275822	19	5.7	18	81	7	79	40	44	2	12	1.57
13279104--13279171	22	3.1	21	85	4	73	76	1	11	10	1.09
13279103--13279162	20	3.0	20	86	11	86	75	1	13	10	1.13
13279116--13279183	22	3.1	22	78	4	57	75	1	14	8	1.12
13279116--13279192	29	2.4	32	77	18	81	71	2	14	11	1.25
13280293--13280418	58	2.2	59	81	8	150	23	23	11	42	1.87
13280434--13280578	32	4.5	31	79	6	139	17	24	10	47	1.78
13280431--13280578	64	2.3	63	80	6	156	17	25	10	47	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117