genome.fa.s90.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  36  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9050419--9050466	19	2.5	19	80	16	62	12	2	41	43	1.54
9050389--9050464	13	5.8	13	75	16	59	14	3	36	44	1.64
9052495--9052560	30	2.2	30	88	0	96	25	10	15	48	1.77
9052517--9052584	30	2.3	30	78	0	73	26	10	16	47	1.78
9053027--9053230	66	3.1	64	73	6	167	25	10	27	36	1.89
9053039--9053245	22	9.4	22	71	11	84	25	10	28	36	1.88
9053237--9053348	41	2.7	41	83	5	145	36	8	13	41	1.76
9053236--9053393	82	1.9	82	82	0	199	35	12	13	39	1.81
9053415--9053520	40	2.7	40	81	0	131	36	10	17	34	1.84
9053528--9053721	41	4.8	40	76	12	182	32	13	15	37	1.88
9053544--9053718	40	4.3	41	77	11	130	31	14	16	37	1.89
9054558--9054603	23	2.0	23	83	12	58	2	17	2	78	0.96
9056654--9056699	19	2.5	18	85	3	65	0	15	2	82	0.76
9056621--9056700	30	2.6	31	82	7	85	2	17	1	78	0.92
9056623--9056711	47	1.9	46	81	6	108	3	15	1	79	0.92
9056625--9056711	29	3.1	28	76	11	88	3	14	1	80	0.90
9056625--9056709	9	8.6	9	73	15	62	3	15	1	80	0.92
9057828--9057862	9	3.8	9	92	3	52	2	2	5	88	0.68
9057828--9057873	9	4.7	10	86	8	51	4	4	4	86	0.77
9060911--9060945	18	1.9	18	88	11	54	68	5	14	11	1.37
9062586--9062875	144	2.0	144	94	0	508	36	14	12	36	1.84
9068192--9068227	15	2.4	15	95	0	63	16	2	8	72	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9068192--9068239	15	3.0	16	87	6	62	20	2	8	68	1.26
9073662--9073711	18	3.0	17	80	11	59	56	6	0	38	1.24
9073815--9073866	24	2.2	25	83	16	67	71	1	0	26	0.97
9087382--9087425	20	2.2	20	84	8	54	27	0	2	70	0.99
9088484--9088546	11	5.4	11	86	9	81	17	0	1	80	0.78
9088476--9088552	11	6.2	13	84	7	65	15	2	1	80	0.89
9088484--9088580	6	15.5	6	76	13	81	17	1	3	78	0.94
9088486--9088579	11	8.5	11	74	24	51	18	1	3	77	0.96
9088774--9088857	16	5.2	16	77	5	89	28	7	7	57	1.52
9088774--9088857	31	2.6	32	79	7	107	28	7	7	57	1.52
9088875--9088922	16	3.1	15	82	11	62	27	6	14	52	1.66
9088798--9088945	73	2.0	74	82	13	182	28	4	12	54	1.57
9089539--9089639	44	2.3	44	87	5	141	22	4	10	61	1.48
9091976--9092086	42	2.6	43	85	1	134	32	14	15	37	1.87
9092316--9092400	3	28.3	3	95	0	152	32	1	0	65	1.00
9092399--9092429	3	10.3	3	100	0	62	32	0	32	35	1.58
9093044--9093117	8	9.1	8	76	12	62	13	2	2	81	0.92
9093044--9093122	13	6.1	13	76	15	74	13	2	2	81	0.91
9093343--9093380	15	2.4	16	86	4	51	28	5	10	55	1.56
9093378--9093447	23	3.2	23	71	13	67	24	2	10	62	1.40
9093343--9093407	16	4.4	16	69	21	61	27	4	9	58	1.49
9100277--9100346	30	2.3	29	83	11	88	38	0	15	45	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9106869--9106900	3	10.7	3	93	0	55	31	3	0	65	1.08
9106932--9107005	18	4.3	17	76	17	64	14	6	0	78	0.95
9106933--9107008	12	6.8	11	74	14	59	14	6	0	78	0.93
9106947--9107005	6	10.0	6	85	7	68	15	5	0	79	0.89
9106948--9107008	17	3.3	18	71	19	54	13	4	0	81	0.83
9106948--9107008	9	6.6	9	75	16	54	13	4	0	81	0.83
9107017--9107481	59	7.9	59	87	2	645	43	6	14	34	1.72
9107030--9107481	119	3.8	118	91	2	478	43	6	14	34	1.73
9107030--9107481	178	2.5	177	90	4	682	43	6	14	34	1.73
9108922--9108956	17	2.1	16	89	5	52	22	2	11	62	1.41
9109704--9109771	3	22.7	3	100	0	136	33	0	0	66	0.92
9116779--9116805	7	3.9	7	100	0	54	11	0	29	59	1.32
9117153--9117215	27	2.4	26	82	12	67	58	0	4	36	1.19
9117256--9117296	17	2.4	18	80	12	50	36	4	0	58	1.20
9119771--9119806	18	2.0	18	94	0	63	22	0	2	75	0.94
9119764--9119833	28	2.5	28	76	21	74	27	0	2	70	1.02
9120650--9120680	10	2.9	11	90	9	55	45	0	0	54	0.99
9120997--9121044	15	3.3	15	79	2	53	52	2	0	45	1.12
9123262--9123309	14	3.5	15	70	18	50	75	4	18	2	1.07
9123354--9123418	25	2.5	26	78	14	73	36	0	3	60	1.13
9130262--9130294	16	2.1	16	88	5	50	69	9	3	18	1.28
9130321--9130376	27	2.1	27	93	0	94	57	0	10	32	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9134577--9134665	16	5.4	16	68	24	51	35	1	1	61	1.11
9134713--9134751	3	13.0	3	100	0	78	66	0	0	33	0.92
9135275--9135299	13	1.9	13	100	0	50	92	0	8	0	0.40
9135906--9135967	23	2.8	21	82	7	61	45	9	1	43	1.46
9136118--9136142	7	3.6	7	100	0	50	88	0	0	12	0.53
9138992--9139039	18	2.5	20	83	13	73	50	2	0	47	1.12
9140484--9140522	16	2.3	16	86	8	51	41	2	0	56	1.13
9140749--9140779	14	2.1	14	94	5	53	90	3	6	0	0.55
9142592--9142622	10	3.1	10	90	0	53	87	0	12	0	0.55
9142708--9142746	20	2.0	20	85	10	53	79	5	0	15	0.90
9143980--9144009	12	2.5	12	94	0	51	40	3	0	56	1.16
9143997--9144032	17	2.1	17	94	0	63	30	2	0	66	1.06
9143991--9144030	17	2.4	16	84	8	53	30	2	0	67	1.04
9156070--9156103	12	2.8	12	86	0	50	61	0	29	8	1.26
9160414--9160563	60	2.6	58	87	8	214	36	13	6	44	1.70
9160599--9160674	5	14.4	5	76	15	73	78	2	3	14	1.00
9160607--9160675	6	11.7	6	77	14	56	79	1	4	14	0.95
9160599--9160667	16	4.4	15	77	14	59	79	2	2	14	0.96
9160602--9160674	11	6.8	11	81	9	80	79	2	4	13	0.99
9160698--9160742	11	4.0	11	85	2	63	80	2	0	17	0.82
9161076--9161118	20	2.2	20	87	4	61	18	20	20	39	1.93
9162260--9162337	8	9.5	8	81	15	88	11	14	0	74	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9162254--9162302	24	2.0	25	84	4	64	8	16	0	75	1.03
9162265--9162335	17	4.2	17	81	12	83	9	11	0	78	0.95
9162272--9162337	35	1.9	34	93	3	114	12	12	0	75	1.04
9162271--9162328	9	6.6	9	86	7	75	10	12	0	77	0.99
9171170--9171734	58	9.7	59	81	10	598	36	12	6	44	1.68
9171170--9171735	119	4.8	118	85	8	700	36	12	6	44	1.68
9171172--9171726	286	1.9	288	88	4	845	37	12	6	43	1.68
9171445--9171734	61	4.9	59	82	5	379	36	12	6	45	1.67
9171761--9171840	5	15.4	5	72	19	58	78	2	5	13	1.01
9171761--9171841	17	5.1	15	73	13	65	79	2	4	13	1.01
9171764--9171908	11	12.8	11	73	14	75	75	4	3	16	1.09
9171769--9171844	40	1.9	40	83	5	100	78	1	6	13	0.99
9171867--9171911	23	2.0	23	91	8	74	84	2	0	13	0.72
9171867--9171925	9	7.1	8	75	17	50	83	3	0	13	0.78
9182253--9182279	14	1.9	14	100	0	54	29	0	11	59	1.32
9182224--9182487	59	4.4	60	81	9	276	37	11	6	45	1.65
9183633--9183680	18	2.6	19	87	6	73	43	0	2	54	1.12
9184120--9184146	14	1.9	14	100	0	54	14	3	14	66	1.38
9184298--9185174	48	18.4	47	78	9	707	37	22	12	27	1.90
9184306--9185180	144	6.1	141	79	8	826	37	22	12	28	1.90
9195755--9195798	18	2.6	17	86	10	63	9	0	13	77	0.99
9196222--9196251	16	1.9	15	93	6	51	13	0	6	80	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9196442--9196493	11	4.4	11	73	17	50	76	11	0	11	1.01
9196437--9196488	26	2.0	27	92	3	88	73	13	0	13	1.11
9196442--9196502	18	3.4	17	75	11	59	77	9	1	11	1.07
9201198--9201245	24	2.0	24	84	4	62	81	2	16	0	0.79
9201198--9201242	6	7.7	6	85	14	51	84	2	13	0	0.72
9201764--9201951	90	2.1	89	88	5	270	44	9	21	25	1.81
9202313--9202368	27	2.1	27	96	0	103	32	8	0	58	1.29
9203302--9203384	21	3.7	21	71	16	60	21	1	4	72	1.10
9203301--9203376	16	4.9	14	75	14	53	19	1	3	75	1.04
9203319--9203484	4	40.5	4	69	16	51	27	1	4	66	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117