genome.fa.s90.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  103  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18994395--18997263	899	3.2	896	86	2	3878	25	24	24	25	2.00
18996340--18996392	26	2.0	26	92	0	88	28	20	22	28	1.99
18997952--18998007	26	2.2	26	93	0	94	26	16	25	32	1.96
18998686--18998740	26	2.1	27	93	3	94	30	18	23	27	1.97
18999585--18999636	26	2.0	26	96	3	97	25	21	26	26	1.99
19000316--19000367	25	2.0	26	88	3	79	30	17	25	26	1.97
19001216--19001267	26	2.0	26	92	3	88	25	19	26	28	1.98
19001904--19001955	25	2.0	26	88	3	79	30	17	25	26	1.97
19002804--19002856	26	2.0	26	100	0	106	26	20	26	26	1.99
19003468--19003520	26	2.0	26	96	0	97	26	18	26	28	1.98
19004369--19004420	26	2.0	26	85	3	70	25	21	26	26	1.99
19004918--19004993	26	2.9	26	96	0	134	25	18	28	27	1.98
19007383--19007426	20	2.2	20	95	0	79	40	4	40	13	1.65
19007618--19007696	26	3.0	25	92	7	131	27	21	24	26	1.99
19007670--19008037	159	2.3	159	89	1	533	21	29	29	19	1.97
19008708--19008759	26	2.0	26	96	0	95	30	17	23	28	1.97
19009795--19009873	26	3.0	26	96	0	140	27	20	24	27	1.99
19009847--19010202	159	2.2	159	85	2	464	21	28	28	22	1.99
19011064--19011142	26	3.0	26	96	0	140	27	20	24	27	1.99
19011982--19012032	26	2.0	26	92	0	84	27	15	27	29	1.96
19012884--19012959	26	2.9	26	98	0	143	27	19	25	27	1.99
19013803--19013855	26	2.0	26	92	0	88	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19014698--19014750	26	2.0	26	96	0	97	28	20	24	26	1.99
19014926--19017142	867	2.5	858	85	5	2906	25	24	24	25	2.00
19017116--19017168	26	2.0	26	96	0	97	26	18	26	28	1.98
19021843--19021895	26	2.0	26	100	0	106	26	20	26	26	1.99
19019199--19032557	887	15.0	898	84	6	16477	25	24	24	25	2.00
19022730--19022782	26	2.0	26	92	0	88	28	22	24	24	2.00
19023668--19023746	26	3.0	26	96	0	140	27	17	27	26	1.98
19025476--19025528	26	2.0	26	88	0	79	28	18	24	28	1.98
19027204--19027255	26	2.0	25	96	3	95	26	19	26	26	1.99
19028092--19028144	26	2.0	26	92	0	88	26	20	26	26	1.99
19029863--19029915	26	2.0	26	92	0	88	26	16	28	28	1.97
19035752--19035804	26	2.0	26	96	0	97	26	18	26	28	1.98
19036650--19036702	26	2.0	26	88	0	79	24	20	28	26	1.99
19037531--19037583	26	2.0	26	96	0	97	24	20	28	26	1.99
19035503--19040488	898	5.5	885	83	8	5707	25	24	25	24	2.00
19039281--19039333	26	2.0	26	85	0	70	28	20	22	28	1.99
19039997--19040040	20	2.2	20	91	0	70	40	2	40	15	1.60
19040231--19040309	26	3.0	26	94	0	140	27	21	24	26	1.99
19040283--19040648	158	2.3	158	86	4	490	22	28	29	19	1.98
19041291--19041343	26	2.0	26	92	0	88	26	18	24	30	1.98
19042169--19042221	26	2.0	26	96	0	97	26	18	26	28	1.98
19043025--19043063	20	2.0	20	94	0	69	20	28	25	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19040440--19044091	885	4.1	882	83	5	4323	25	23	24	25	2.00
19043951--19044003	26	2.0	26	92	0	88	26	20	24	28	1.99
19047753--19047802	26	1.9	26	95	0	91	28	14	24	34	1.93
19050393--19050444	26	2.0	26	88	3	79	26	21	25	26	1.99
19052173--19052225	26	2.0	26	92	0	88	28	20	24	26	1.99
19044117--19057483	886	15.1	876	82	7	14495	25	23	24	25	2.00
19053947--19053997	26	2.0	26	88	0	75	25	15	27	31	1.96
19057598--19057650	26	2.0	26	92	0	88	28	18	20	32	1.97
19057754--19059990	717	3.1	711	86	5	2866	25	23	24	26	2.00
19059213--19059284	26	2.8	26	100	0	144	30	19	23	26	1.98
19059964--19060016	26	2.0	26	88	0	79	30	18	22	28	1.98
19062605--19062657	26	2.0	26	100	0	106	26	20	26	26	1.99
19061099--19072026	892	12.2	890	84	5	13453	25	24	24	25	2.00
19063507--19063559	26	2.0	26	96	0	97	24	20	28	26	1.99
19061739--19072026	902	11.5	902	85	3	13521	25	24	25	25	2.00
19064412--19064465	27	2.0	27	88	0	81	27	24	22	25	2.00
19065315--19065367	26	2.0	26	100	0	106	26	20	26	26	1.99
19067099--19067151	26	2.0	26	96	0	97	26	18	26	28	1.98
19069764--19069813	26	1.9	26	91	0	82	30	16	26	28	1.96
19070655--19070707	26	2.0	26	85	0	70	28	18	22	30	1.98
19071557--19071609	26	2.0	26	85	7	72	28	18	24	28	1.98
19072349--19072401	26	2.0	26	92	0	88	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19073248--19073300	26	2.0	26	89	7	81	28	20	22	28	1.99
19072019--19083222	902	12.6	899	85	4	14260	25	24	24	25	2.00
19080305--19080356	25	2.0	26	88	3	79	28	23	21	26	1.99
19081209--19081261	26	2.0	26	92	0	88	28	22	24	24	2.00
19076491--19083222	874	7.6	901	85	4	8516	24	24	24	25	2.00
19083001--19083053	26	2.0	26	96	0	97	24	16	26	32	1.97
19083340--19083392	26	2.0	26	92	0	88	24	15	30	30	1.95
19084030--19084443	185	2.2	184	90	2	668	21	28	28	20	1.98
19086655--19086707	26	2.0	26	96	0	97	26	22	24	26	2.00
19087545--19087597	26	2.0	26	88	0	79	30	16	24	28	1.97
19090222--19090274	26	2.0	26	96	0	97	26	20	24	28	1.99
19090621--19090673	26	2.0	26	92	0	88	28	20	20	30	1.98
19092161--19092213	26	2.0	26	92	0	88	28	22	22	26	1.99
19093039--19093090	26	2.0	25	92	3	86	28	19	25	26	1.98
19094452--19094504	26	2.0	26	96	0	97	26	22	24	26	2.00
19093668--19098952	902	5.9	896	87	3	7109	25	24	24	25	2.00
19096254--19096306	26	2.0	26	92	0	88	28	22	20	28	1.99
19098049--19098103	26	2.1	26	93	0	92	29	20	27	23	1.99
19100597--19100646	26	1.9	26	95	0	91	28	20	26	26	1.99
19101467--19101519	26	2.0	26	96	0	97	28	20	24	26	1.99
19101700--19101729	4	7.5	4	92	0	51	3	26	70	0	1.03
19101700--19101730	16	1.9	16	100	0	62	6	25	67	0	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19102376--19102428	26	2.0	26	96	0	97	26	18	26	28	1.98
19098987--19104164	868	5.9	866	84	6	6416	24	24	25	25	2.00
19104138--19104190	26	2.0	26	92	0	88	28	18	24	28	1.98
19104881--19104933	26	2.0	26	89	7	81	30	18	24	26	1.98
19105771--19105823	26	2.0	26	100	0	106	26	20	26	26	1.99
19108462--19108514	26	2.0	26	96	0	97	28	20	24	26	1.99
19109333--19109385	26	2.0	26	88	0	79	28	16	26	28	1.97
19110224--19110273	26	1.9	26	95	0	91	28	18	28	26	1.98
19111107--19111159	26	2.0	26	88	0	79	26	18	24	30	1.98
19113767--19113819	26	2.0	26	85	0	70	26	20	24	28	1.99
19115576--19115625	26	1.9	26	95	0	91	28	18	28	26	1.98
19108784--19129221	903	22.6	901	77	9	16518	25	24	25	25	2.00
19116423--19116475	26	2.0	26	92	0	88	30	18	24	26	1.98
19117326--19117378	26	2.0	26	96	0	97	26	18	26	28	1.98
19118230--19118282	26	2.0	26	96	0	97	24	22	26	26	2.00
19119109--19119161	26	2.0	26	92	0	88	28	18	24	28	1.98
19119368--19119420	26	2.0	26	96	0	97	28	20	24	26	1.99
19120274--19120324	26	2.0	26	88	0	75	31	19	25	23	1.98
19122042--19122095	26	2.0	27	89	3	83	22	22	27	27	1.99
19122937--19122989	26	2.0	26	92	0	88	28	22	24	24	2.00
19123822--19123874	26	2.0	26	89	7	81	28	20	22	28	1.99
19124718--19124759	20	2.1	20	90	0	66	30	19	26	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19125610--19125662	26	2.0	26	92	0	88	28	16	26	28	1.97
19127397--19127449	26	2.0	26	92	0	88	30	20	24	24	1.99
19121174--19129221	894	9.0	901	84	4	9987	25	23	24	25	2.00
19129913--19129965	26	2.0	26	96	0	97	28	20	24	26	1.99
19130382--19130462	26	3.1	26	80	13	87	30	18	19	30	1.96
19131301--19131354	26	2.1	26	96	0	99	27	20	25	25	1.99
19133039--19133091	26	2.0	26	96	0	97	28	20	24	26	1.99
19131833--19138591	891	7.5	894	82	7	7309	25	23	24	25	2.00
19134833--19134885	26	2.0	26	96	0	97	26	22	24	26	2.00
19135642--19136004	185	2.0	187	82	7	445	23	26	27	21	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117