genome.fa.s90.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  117  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20727524--20727574	26	2.0	26	100	0	102	27	25	19	27	1.99
20728426--20728478	26	2.0	26	88	0	79	22	24	22	30	1.99
20729060--20732298	854	3.7	854	90	2	4480	25	24	25	25	2.00
20731836--20732766	468	2.0	467	89	1	1407	32	21	19	26	1.97
20733005--20733057	26	2.0	26	85	7	72	26	22	20	30	1.98
20734808--20734860	26	2.0	26	92	0	88	24	24	22	28	2.00
20732300--20737373	903	5.6	902	86	2	6715	25	24	23	25	2.00
20736614--20736666	26	2.0	26	96	0	97	30	24	16	28	1.97
20738294--20738345	26	2.0	26	88	0	77	28	23	17	30	1.97
20737553--20738773	631	1.9	631	87	2	1799	23	24	25	25	2.00
20740794--20740846	26	2.0	26	92	7	90	28	28	16	26	1.97
20741691--20741743	26	2.0	26	96	0	97	24	26	22	26	2.00
20743489--20743566	26	3.0	26	98	0	147	33	23	16	26	1.96
20744408--20744460	26	2.0	26	100	0	106	26	26	20	26	1.99
20745296--20745346	26	2.0	26	92	0	84	31	23	13	31	1.93
20739723--20752050	895	13.7	894	83	5	14286	25	24	24	25	2.00
20747081--20747133	26	2.0	26	92	0	88	28	24	18	28	1.98
20747276--20747301	13	2.0	13	100	0	52	7	15	61	15	1.55
20747986--20748035	26	1.9	26	95	0	91	24	24	20	32	1.98
20748879--20748931	26	2.0	26	92	0	88	30	24	18	26	1.98
20749012--20749044	11	3.0	11	100	0	66	18	27	36	18	1.94
20750673--20750725	26	2.0	26	96	0	97	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20751569--20751621	26	2.0	26	96	0	97	26	24	20	28	1.99
20752060--20752088	11	2.6	11	100	0	58	31	20	17	31	1.96
20752630--20752771	17	8.3	17	69	23	77	66	2	2	28	1.17
20752988--20753040	1	53.0	1	80	0	52	1	0	9	88	0.58
20752994--20753037	7	6.6	7	89	5	65	0	0	11	88	0.51
20753047--20753206	41	3.8	41	87	3	230	36	23	18	22	1.95
20753047--20753201	83	1.8	85	90	2	251	34	23	18	23	1.96
20753121--20753303	97	1.9	98	90	3	298	37	21	16	24	1.93
20753218--20753355	41	3.4	42	89	5	219	35	21	17	25	1.95
20753212--20753355	40	3.5	41	88	6	213	34	21	17	26	1.95
20754608--20754659	6	8.8	6	75	12	54	3	15	1	78	0.98
20754627--20754660	10	3.2	10	91	8	50	0	11	2	85	0.71
20758559--20758787	111	2.0	113	88	8	338	35	11	7	45	1.69
20758795--20758852	14	4.2	14	76	8	57	77	0	8	13	0.98
20758800--20758852	17	3.1	17	75	22	56	77	0	9	13	0.99
20758814--20758846	11	3.1	11	86	4	50	78	0	12	9	0.95
20758839--20758878	17	2.4	16	84	8	53	72	0	5	22	1.04
20759274--20759318	20	2.2	20	88	0	63	13	15	31	40	1.86
20759915--20760065	17	8.8	16	67	26	71	66	3	1	28	1.18
20759921--20760056	4	34.5	4	67	19	56	66	2	2	28	1.18
20759914--20760065	24	6.3	24	68	25	81	66	3	1	28	1.18
20760921--20760973	26	2.0	26	100	0	106	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20761823--20761875	26	2.0	26	88	0	79	26	24	18	30	1.98
20762713--20762763	25	2.0	26	85	7	70	29	19	19	31	1.97
20764481--20764533	26	2.0	26	85	0	70	28	24	18	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117

The End!