genome.fa.s90.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  84  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16531761--16531814	27	2.0	26	92	3	90	27	24	22	25	2.00
16532596--16532646	26	2.0	26	100	0	102	29	27	15	27	1.96
16531500--16533166	833	2.0	833	88	1	2482	24	25	24	25	2.00
16532331--16535322	902	3.3	900	87	2	4297	25	26	24	24	2.00
16535113--16535478	160	2.3	158	86	0	489	21	28	27	22	1.99
16537881--16537933	26	2.0	26	85	0	70	30	26	16	26	1.97
16538761--16538813	26	2.0	26	96	0	97	26	24	20	28	1.99
16540554--16540606	26	2.0	26	96	0	97	28	26	18	26	1.98
16543203--16543255	26	2.0	26	92	0	88	26	22	22	28	1.99
16541311--16578452	903	41.1	900	72	12	18678	25	24	24	25	2.00
16544106--16544158	26	2.0	26	92	0	88	24	24	22	28	2.00
16549310--16549362	26	2.0	26	96	0	97	26	26	18	28	1.98
16550215--16550267	27	2.0	27	92	3	90	26	24	18	30	1.98
16551117--16551169	26	2.0	26	85	7	72	33	26	15	24	1.95
16552918--16552970	26	2.0	26	96	0	97	26	24	20	28	1.99
16553822--16553874	26	2.0	26	92	0	88	28	24	20	26	1.99
16548434--16556353	904	8.8	902	85	3	10077	25	24	23	25	2.00
16554298--16554348	26	2.0	26	88	0	75	50	17	9	21	1.74
16555544--16557066	739	2.1	739	87	3	2143	25	24	23	26	2.00
16558276--16558328	26	2.0	26	92	0	88	28	24	18	28	1.98
16559607--16559659	26	2.0	26	92	0	88	22	26	22	28	1.99
16560509--16560561	26	2.0	26	96	0	97	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16560535--16567412	855	7.8	860	86	5	8349	25	24	24	25	2.00
16563988--16564043	26	2.2	26	90	0	85	28	23	17	30	1.97
16564879--16564930	26	2.0	26	100	0	104	30	26	15	26	1.96
16563122--16578408	901	16.9	893	74	10	10511	25	24	24	25	2.00
16566653--16566708	26	2.2	26	90	6	87	28	19	17	33	1.95
16566634--16568098	733	2.0	731	88	1	2193	26	23	23	26	2.00
16566733--16568086	732	1.9	726	89	1	2021	27	23	23	25	2.00
16568292--16568343	26	2.0	26	84	0	68	28	26	19	25	1.98
16569256--16569902	324	2.0	325	89	2	987	21	24	27	25	2.00
16571307--16571358	26	2.0	26	88	7	79	32	19	19	28	1.96
16572202--16572254	26	2.0	26	92	0	88	26	22	22	28	1.99
16569577--16578452	905	9.9	894	84	4	10769	25	24	24	25	2.00
16573108--16573158	25	2.0	26	92	3	86	29	27	17	25	1.98
16574916--16574968	26	2.0	26	92	0	88	30	22	20	26	1.98
16578337--16578569	117	2.0	117	84	1	306	21	30	27	20	1.98
16578602--16578654	26	2.0	26	88	0	79	26	24	18	30	1.98
16579075--16579125	27	1.9	27	84	4	68	50	9	11	27	1.70
16579514--16579566	26	2.0	26	96	0	97	26	20	22	30	1.98
16579316--16580798	764	1.9	764	88	1	2256	23	26	24	25	2.00
16581177--16581229	26	2.0	26	92	0	88	28	22	22	26	1.99
16580033--16581951	903	2.1	899	88	1	2847	24	25	24	25	2.00
16582797--16582849	26	2.0	26	92	0	88	30	22	16	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16581911--16590845	853	10.2	859	80	8	8879	25	25	23	25	2.00
16587168--16587220	26	2.0	26	96	0	97	28	24	20	26	1.99
16588942--16588994	26	2.0	26	96	0	97	28	26	18	26	1.98
16585584--16590510	879	5.5	879	82	7	5611	26	25	23	25	2.00
16590943--16593344	888	2.7	888	88	2	3484	26	23	23	26	2.00
16593290--16593341	25	2.0	25	88	3	77	28	21	19	30	1.97
16592688--16593977	661	2.0	662	89	1	1985	27	23	22	26	1.99
16594814--16594865	26	2.0	26	96	0	95	30	21	19	28	1.97
16593954--16597058	897	3.5	889	85	3	4031	25	24	24	25	2.00
16596795--16597321	263	2.0	263	93	0	912	27	23	19	29	1.98
16597749--16597798	26	1.9	26	100	0	100	28	28	16	28	1.97
16597058--16599144	903	2.3	893	87	4	2991	26	24	23	25	2.00
16600239--16600289	26	2.0	26	100	0	102	29	27	15	27	1.96
16599367--16607752	874	9.4	871	76	11	7214	25	25	24	25	2.00
16605608--16605660	26	2.0	26	96	0	97	26	24	20	28	1.99
16610027--16610078	26	2.0	26	88	3	79	28	19	23	28	1.98
16607934--16619792	891	13.2	888	76	11	9796	25	25	23	25	2.00
16610915--16610967	26	2.0	26	96	0	97	26	26	22	24	2.00
16612638--16612690	26	2.0	26	96	0	97	26	24	20	28	1.99
16613542--16613592	26	2.0	26	92	0	84	29	27	13	29	1.94
16614443--16614495	26	2.0	26	88	0	79	24	24	18	32	1.97
16617272--16617324	26	2.1	26	92	3	90	26	26	16	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16618059--16618083	12	2.1	12	100	0	50	32	28	32	8	1.86
16621471--16621523	26	2.0	26	96	0	97	26	24	20	28	1.99
16619844--16627839	903	8.9	899	79	7	7919	25	25	23	25	2.00
16622379--16622431	26	2.0	26	88	0	79	30	24	16	28	1.97
16625882--16625934	26	2.0	26	92	0	88	30	24	18	26	1.98
16628457--16628508	26	2.0	26	85	7	70	51	13	11	23	1.73
16629801--16629853	26	2.0	26	96	0	97	28	26	18	26	1.98
16627877--16632272	913	4.8	896	84	6	5382	25	24	24	25	2.00
16631019--16631062	19	2.3	19	100	0	88	29	13	22	34	1.93
16631594--16631672	26	3.0	26	96	0	140	27	22	20	29	1.98
16633144--16633196	26	2.0	26	92	0	88	30	24	18	26	1.98
16635082--16635134	26	2.0	26	92	0	88	26	26	16	30	1.97
16634515--16640337	901	6.5	896	84	5	7436	26	24	23	24	2.00
16636899--16636951	26	2.0	26	96	0	97	26	24	20	28	1.99
16639566--16639618	26	2.0	26	96	0	97	26	24	20	28	1.99
16637801--16640337	896	2.8	895	87	3	3600	26	24	23	25	2.00
16640311--16640360	26	1.9	26	87	0	73	26	28	18	28	1.98
16639555--16641021	743	2.0	745	88	1	2165	27	24	22	25	1.99
16642022--16642100	26	3.0	26	90	0	131	29	25	17	27	1.98
16643653--16643705	26	2.0	26	96	0	97	28	26	18	26	1.98
16644557--16644609	26	2.0	26	96	0	97	28	26	18	26	1.98
16642790--16649238	904	7.2	899	87	4	8244	25	24	24	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16649001--16649053	26	2.0	26	96	0	97	26	24	20	28	1.99
16650606--16650656	26	2.0	26	92	0	84	27	23	19	29	1.98
16653446--16657625	836	4.8	871	83	6	4866	25	24	24	25	2.00
16657916--16657957	20	2.1	20	100	0	84	33	21	14	30	1.93
16658794--16658846	26	2.0	26	89	7	81	24	26	24	24	2.00
16658366--16664138	900	6.5	899	81	7	6271	25	25	23	25	2.00
16659689--16659746	26	2.2	26	90	3	89	25	24	22	27	2.00
16660590--16660642	26	2.1	26	92	3	90	26	26	18	28	1.98
16659599--16663917	891	4.9	865	82	8	4554	25	24	23	25	2.00
16663226--16663277	26	2.0	26	96	0	95	26	26	17	28	1.97
16664267--16664318	26	2.0	26	96	0	95	28	26	17	26	1.97
16664617--16664669	26	2.0	26	92	0	88	28	24	18	28	1.98
16668080--16668132	26	2.0	26	89	7	81	24	26	24	24	2.00
16667226--16682058	892	16.5	894	73	12	8934	25	25	23	25	2.00
16668969--16669026	26	2.2	26	90	3	89	25	24	22	27	2.00
16672490--16672541	26	2.0	26	96	0	95	28	26	17	26	1.97
16671459--16673512	887	2.3	890	84	5	2727	24	25	24	25	2.00
16673715--16673767	26	2.0	26	92	0	88	32	24	15	28	1.95
16674619--16674671	26	2.0	26	92	0	88	28	24	18	28	1.98
16675376--16675426	26	2.0	26	92	0	84	33	27	9	29	1.89
16676278--16676328	26	2.0	26	88	7	77	31	27	13	27	1.94
16677170--16677222	26	2.0	26	96	0	97	26	26	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16678946--16678998	26	2.0	26	96	0	97	26	22	18	32	1.97
16679832--16679884	26	2.0	26	100	0	106	26	26	20	26	1.99
16681627--16681679	26	2.0	26	88	0	79	22	28	22	26	1.99
16682308--16682359	26	2.0	26	100	0	104	26	26	19	26	1.99
16681402--16682749	691	2.0	680	86	3	1871	21	25	26	26	2.00
16683204--16683256	26	2.0	26	92	0	88	28	24	18	28	1.98
16685165--16685217	26	2.0	26	92	0	88	28	24	18	28	1.98
16686046--16686098	26	2.0	26	96	0	97	26	24	20	28	1.99
16684303--16689821	881	6.2	877	84	7	6547	25	24	24	25	2.00
16686957--16687006	26	1.9	26	95	0	91	24	28	22	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117