genome.fa.s90.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  108  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19687833--19687885	26	2.0	26	100	0	106	26	20	26	26	1.99
19688814--19688879	17	3.8	17	80	8	53	28	1	1	68	1.08
19688852--19688879	13	2.2	13	100	0	56	21	0	0	78	0.75
19689898--19689937	17	2.4	16	84	8	53	22	5	0	72	1.04
19689924--19689974	17	2.9	18	78	21	63	13	3	1	80	0.94
19689989--19690225	59	4.0	59	84	6	309	44	7	13	35	1.71
19693753--19693778	8	3.2	8	100	0	52	88	0	11	0	0.52
19694126--19694167	10	4.1	10	87	6	57	83	0	16	0	0.65
19694099--19694185	22	3.9	22	78	11	88	74	0	19	5	1.01
19694134--19694185	17	3.2	17	81	5	63	80	0	15	3	0.85
19695434--19695854	41	10.1	41	92	3	666	24	16	23	35	1.95
19695434--19695854	207	2.0	208	92	3	697	24	16	23	35	1.95
19695861--19695915	13	4.5	12	86	8	76	89	10	0	0	0.50
19695861--19695906	1	46.0	1	82	0	56	91	8	0	0	0.43
19696112--19696268	23	6.9	23	66	28	79	28	1	3	66	1.18
19696123--19696261	4	34.5	4	69	20	53	28	2	2	66	1.18
19696189--19696261	17	4.2	17	76	21	64	31	1	2	64	1.16
19696789--19696838	20	2.5	21	80	6	59	38	22	20	20	1.94
19697228--19697267	17	2.4	16	84	8	53	22	5	0	72	1.04
19697254--19697301	17	2.8	17	78	9	53	12	6	2	79	1.01
19697254--19697312	14	4.3	14	77	8	59	13	6	1	77	1.03
19697319--19697495	59	2.9	59	90	3	257	45	8	12	33	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19697319--19697495	60	3.0	60	88	1	266	45	8	12	33	1.72
19698985--19699034	26	1.9	26	95	0	91	28	24	24	24	2.00
19697977--19700091	898	2.4	892	88	2	3083	25	24	24	24	2.00
19699883--19699935	26	2.0	26	96	0	97	26	18	26	28	1.98
19700068--19700117	26	1.9	26	100	0	100	28	22	26	24	1.99
19699863--19700275	185	2.2	184	87	3	589	22	27	28	21	1.99
19700955--19701007	26	2.0	26	96	0	97	26	18	26	28	1.98
19701835--19701887	26	2.0	26	96	0	97	26	18	26	28	1.98
19703619--19703671	26	2.0	26	88	0	79	32	20	20	26	1.98
19704517--19704569	26	2.0	26	88	0	79	30	18	22	28	1.98
19700061--19712425	880	13.9	896	86	4	15879	25	24	24	25	2.00
19705419--19705471	26	2.0	26	88	0	79	30	16	24	28	1.97
19706321--19706371	26	2.0	26	96	0	93	29	13	25	31	1.94
19708952--19709004	26	2.0	26	96	0	97	26	20	24	28	1.99
19709848--19709900	26	2.0	26	92	0	88	26	16	26	30	1.97
19710748--19710800	26	2.0	26	96	0	97	28	20	24	26	1.99
19711644--19711696	26	2.0	26	88	0	79	26	20	26	26	1.99
19716519--19716571	26	2.0	26	92	0	88	28	18	24	28	1.98
19714045--19718112	898	4.7	872	84	5	4917	25	23	24	26	2.00
19721728--19721780	26	2.0	26	96	0	97	26	22	26	24	2.00
19722625--19722677	26	2.0	26	96	0	97	28	20	24	26	1.99
19720854--19728693	897	8.8	887	85	5	9708	25	23	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19724377--19724429	26	2.0	26	88	0	79	28	16	24	30	1.97
19725266--19725318	26	2.0	26	100	0	106	26	20	26	26	1.99
19726159--19726211	26	2.0	26	92	0	88	28	18	24	28	1.98
19723506--19728700	882	5.9	893	85	5	6569	25	23	25	25	2.00
19729325--19729377	26	2.0	26	85	0	70	26	18	24	30	1.98
19730213--19730264	26	2.0	26	84	0	68	32	21	21	25	1.98
19731111--19731159	25	1.9	26	91	4	82	28	24	26	20	1.99
19728691--19733943	890	5.9	890	87	3	7065	25	23	24	26	2.00
19732881--19732930	26	1.9	26	100	0	100	30	20	26	24	1.98
19733208--19734660	747	1.9	752	84	6	1967	25	23	23	27	2.00
19736311--19736363	26	2.0	26	96	0	97	26	18	26	28	1.98
19733968--19738006	900	4.5	901	86	3	5423	24	23	25	26	2.00
19737214--19737266	26	2.0	26	92	0	88	28	15	24	32	1.95
19738797--19738847	26	2.0	26	92	0	84	29	15	29	25	1.96
19739693--19739774	28	3.0	26	81	8	76	29	21	21	26	1.99
19740632--19740684	26	2.0	26	92	0	88	24	20	26	28	1.99
19741117--19741169	26	2.0	26	92	0	88	28	18	24	28	1.98
19742193--19742245	26	2.0	26	89	7	81	24	20	26	28	1.99
19743095--19743144	26	1.9	26	95	0	91	30	22	24	24	1.99
19741376--19748735	902	8.2	899	86	3	9369	25	24	25	25	2.00
19744897--19744950	27	2.0	26	92	3	90	27	18	24	29	1.98
19745784--19745837	26	2.1	26	92	0	90	29	20	24	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19747576--19747628	26	2.0	26	96	0	97	28	20	26	24	1.99
19748472--19748863	167	2.4	164	85	4	499	21	27	32	18	1.97
19749485--19749537	26	2.0	26	88	0	79	32	18	22	26	1.97
19750373--19750425	26	2.0	26	92	0	88	24	18	28	28	1.98
19749048--19752479	885	3.8	887	84	4	4288	25	24	25	24	2.00
19751258--19751307	26	1.9	26	95	0	91	30	22	26	22	1.99
19752146--19752808	329	2.0	329	85	0	894	23	25	31	19	1.98
19753385--19753437	26	2.0	26	96	0	97	32	20	20	26	1.98
19754283--19754335	26	2.0	26	92	0	88	28	20	22	28	1.99
19752475--19760791	901	9.3	898	84	4	10224	25	23	25	25	2.00
19756043--19756093	26	2.0	26	96	0	93	27	17	27	27	1.98
19756944--19756996	26	2.0	26	89	7	81	28	16	24	30	1.97
19758686--19758738	26	2.0	26	89	7	81	28	16	24	30	1.97
19759587--19759639	26	2.0	26	92	0	88	28	18	24	28	1.98
19760488--19760540	26	2.0	26	92	0	88	28	18	24	28	1.98
19760596--19760962	171	2.1	171	90	1	574	19	26	34	19	1.96
19760787--19763089	892	2.6	884	87	4	3276	24	23	25	26	2.00
19763212--19763264	26	2.0	26	100	0	106	26	20	26	26	1.99
19763740--19763792	26	2.0	26	96	0	97	28	20	24	26	1.99
19765513--19765565	26	2.0	26	100	0	106	26	20	26	26	1.99
19766408--19766460	26	2.1	25	96	3	97	28	18	28	24	1.98
19767296--19767348	26	2.0	26	92	0	88	28	22	24	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19763654--19768469	902	5.4	900	85	4	6195	25	24	25	24	2.00
19769077--19769453	171	2.2	167	85	2	495	21	28	32	17	1.96
19770742--19770794	26	2.0	26	92	0	88	28	20	22	28	1.99
19771631--19771682	26	2.0	26	100	0	104	26	19	26	26	1.99
19773393--19773445	26	2.0	26	92	0	88	26	16	26	30	1.97
19775161--19775213	26	2.0	26	92	0	88	26	20	24	28	1.99
19770285--19784929	882	16.5	884	84	5	16966	25	24	24	25	2.00
19776043--19776095	26	2.0	26	100	0	106	26	20	26	26	1.99
19778715--19778764	26	1.9	26	92	8	84	36	18	22	24	1.95
19781394--19781446	26	2.0	26	100	0	106	30	20	22	26	1.98
19784033--19784085	26	2.0	26	85	0	70	32	20	22	24	1.98
19785170--19785222	26	2.0	26	88	0	79	28	16	26	28	1.97
19786074--19786126	26	2.0	26	96	0	97	28	20	24	26	1.99
19786967--19787045	26	3.0	26	94	0	140	27	20	24	27	1.99
19787888--19787940	27	2.0	26	89	7	81	28	20	24	26	1.99
19788788--19788841	26	2.1	26	96	0	99	24	16	25	33	1.96
19784952--19795082	893	11.3	895	84	4	12363	25	24	24	25	2.00
19789681--19789733	26	2.0	26	92	0	88	28	20	22	28	1.99
19790555--19790607	26	2.0	26	92	0	88	26	16	26	30	1.97
19791444--19791496	26	2.0	26	92	0	88	28	18	26	26	1.98
19792343--19792395	26	2.0	26	92	0	88	30	20	22	26	1.98
19794103--19794155	26	2.0	26	82	7	63	30	18	20	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19796454--19796506	26	2.0	26	92	0	88	28	18	24	28	1.98
19798093--19798145	26	2.0	26	88	0	79	28	16	24	30	1.97
19797211--19799363	723	2.9	726	87	4	2987	24	24	25	26	2.00
19798668--19801555	894	3.2	889	84	5	3553	25	24	24	25	2.00
19800614--19800692	26	3.0	26	86	0	113	29	18	25	26	1.98
19800801--19802992	708	3.1	701	84	4	2693	25	22	24	27	2.00
19801621--19803082	721	2.0	726	86	3	2045	25	23	23	27	2.00
19802966--19803018	26	2.0	26	88	0	79	30	20	20	28	1.98
19804761--19804810	26	1.9	26	95	0	91	28	14	30	28	1.95
19802343--19808612	899	6.9	899	85	3	7992	25	24	24	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117