genome.fa.s90.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  63  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13829082--13829119	19	2.0	19	94	0	67	34	10	7	47	1.67
13829665--13829716	26	2.0	25	82	10	61	40	7	1	50	1.42
13831090--13831128	19	2.1	18	85	4	51	48	0	0	51	1.00
13834361--13834418	18	3.3	18	87	2	73	27	15	20	36	1.93
13837799--13837943	59	2.5	60	83	6	181	55	20	3	20	1.57
13841497--13841521	12	2.1	12	100	0	50	36	0	8	56	1.29
13842084--13842281	65	3.0	65	82	4	229	40	7	16	35	1.76
13842407--13842583	65	2.7	65	85	5	232	41	6	16	34	1.75
13842041--13842690	323	2.0	323	99	0	1282	40	10	14	33	1.82
13864556--13864644	34	2.6	33	83	16	119	37	12	13	37	1.82
13866067--13867122	161	6.6	161	82	3	1096	42	15	9	32	1.79
13866067--13867136	481	2.2	477	82	3	1267	42	14	9	32	1.79
13866067--13867245	161	7.4	159	81	4	1054	42	15	9	32	1.79
13868321--13868364	13	3.3	13	87	3	61	61	6	6	25	1.46
13872161--13872186	12	2.2	12	100	0	52	46	15	23	15	1.83
13873494--13873836	62	5.5	60	69	12	174	36	15	7	40	1.76
13874103--13874408	62	4.9	61	73	10	197	40	11	10	37	1.76
13876523--13876567	21	2.1	21	83	0	54	24	2	6	66	1.27
13878274--13878493	63	3.4	64	82	3	273	36	12	11	39	1.80
13881782--13881827	19	2.3	20	77	3	58	36	2	4	56	1.31
13881819--13881874	25	2.2	26	84	12	71	37	1	5	55	1.33
13881807--13881874	26	2.6	26	84	11	77	36	2	5	54	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13881940--13881998	19	3.1	19	80	11	68	35	1	1	61	1.16
13881932--13881989	20	2.9	19	78	14	64	34	1	3	60	1.24
13883471--13883518	24	2.0	24	84	12	62	37	0	2	60	1.09
13884111--13884174	20	3.3	19	78	6	65	34	1	3	60	1.22
13884118--13884180	19	3.4	17	75	18	54	34	1	3	60	1.22
13892215--13892280	21	3.1	21	88	2	78	56	1	3	39	1.24
13892227--13892285	21	2.9	21	92	2	93	59	0	1	38	1.08
13893926--13893977	21	2.5	21	77	0	50	38	5	3	51	1.44
13894034--13894073	19	2.2	18	86	4	53	45	12	0	42	1.42
13893883--13894092	105	2.0	104	94	1	368	38	9	1	50	1.44
13912181--13912263	39	2.1	40	84	6	107	55	7	2	34	1.41
13912690--13912795	20	5.2	20	78	12	85	20	0	33	44	1.58
13912691--13912789	26	3.7	26	84	4	117	21	1	34	43	1.59
13912691--13912795	7	15.7	6	74	18	75	20	0	34	44	1.58
13912811--13912935	14	9.4	13	70	16	60	18	0	32	48	1.48
13912878--13912927	26	1.9	26	83	0	64	16	0	36	48	1.46
13915130--13915174	20	2.2	20	84	7	56	26	8	11	53	1.65
13915963--13916095	10	13.7	10	82	8	111	59	6	0	33	1.29
13915963--13916055	29	3.2	28	82	10	100	62	5	0	32	1.18
13915982--13916096	19	5.9	19	83	9	126	60	5	0	33	1.25
13915982--13916074	10	9.8	9	87	6	114	63	3	1	32	1.17
13920820--13920852	17	1.9	17	100	0	66	36	3	24	36	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13927613--13927689	39	2.0	40	84	2	102	42	12	22	22	1.87
13931598--13931642	17	2.5	19	89	7	67	51	13	6	28	1.66
13931598--13931649	19	2.9	18	80	16	63	53	11	5	28	1.60
13931704--13932132	20	21.1	20	75	9	323	50	11	7	30	1.66
13931724--13931796	21	3.5	21	78	10	96	47	16	8	27	1.74
13931703--13932132	41	10.6	41	81	5	426	50	11	7	30	1.66
13931705--13932055	61	5.8	60	77	7	325	49	10	7	32	1.66
13931705--13932108	102	4.0	100	76	7	334	50	11	7	31	1.66
13932010--13932076	21	3.2	20	73	12	55	53	14	8	22	1.69
13932701--13932789	6	15.3	6	76	6	76	65	8	1	24	1.29
13932707--13932780	17	4.3	17	81	3	94	66	8	1	24	1.27
13932707--13932789	35	2.4	35	89	2	123	65	8	1	25	1.28
13933037--13933138	42	2.4	42	88	3	143	37	18	15	28	1.92
13944846--13944891	16	3.1	16	81	18	71	39	15	10	34	1.82
13945187--13945273	32	2.6	34	80	10	106	52	12	5	28	1.62
13945255--13945706	20	22.1	20	74	13	377	50	10	6	32	1.63
13945255--13945596	41	8.3	41	79	11	287	49	11	6	32	1.64
13945278--13945348	21	3.4	21	74	18	69	49	12	9	28	1.73
13945255--13945706	82	5.5	82	81	10	430	50	10	6	32	1.63
13945372--13945706	41	8.3	41	84	5	389	51	10	5	31	1.59
13946262--13946364	6	17.8	6	75	7	79	69	6	0	22	1.17
13946261--13946366	11	9.2	12	76	14	80	70	6	0	21	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13946296--13946362	35	1.9	35	87	0	98	67	7	1	23	1.25
13947648--13947793	13	10.9	13	76	4	121	23	6	22	47	1.75
13947663--13947793	53	2.5	54	80	7	137	23	6	22	48	1.73
13947662--13947786	27	4.7	26	77	3	115	23	5	23	48	1.72
13952298--13952391	45	2.1	45	100	0	188	34	10	25	29	1.90
13958712--13958816	53	2.0	53	94	1	185	30	7	14	47	1.72
13960616--13960647	16	2.0	16	100	0	64	37	12	6	43	1.68
13961578--13961606	14	2.1	14	93	6	51	6	10	3	79	1.04
13962078--13963297	609	2.0	609	94	0	2118	35	16	15	32	1.90
13966431--13966534	55	1.9	55	89	0	163	43	11	1	43	1.51
13966951--13967018	13	5.1	13	80	7	64	25	0	33	41	1.56
13974463--13974526	33	2.0	32	87	3	92	15	0	10	73	1.09
13978833--13978881	10	4.6	11	78	12	50	79	4	16	0	0.88
13978836--13978881	21	2.3	19	82	14	56	80	4	15	0	0.86
13979234--13979283	14	3.7	13	76	23	50	76	0	16	8	1.02
13979238--13979301	15	4.5	13	74	18	56	76	0	14	9	1.01
13979260--13979339	23	3.5	23	77	13	76	76	0	15	8	1.02
13979273--13979316	17	2.6	16	85	7	52	77	0	13	9	0.99
13979234--13979294	28	2.1	28	84	6	77	75	0	16	8	1.03
13979300--13979345	13	3.8	13	77	16	62	73	0	15	10	1.08
13979260--13979339	39	2.0	40	81	15	96	76	0	15	8	1.02
13979262--13979350	45	2.0	45	80	8	101	75	0	15	8	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13979294--13979348	23	2.3	23	88	11	85	76	0	12	10	1.02
13979274--13979350	16	4.9	16	71	16	63	76	0	14	9	1.01
13980533--13980656	21	6.0	21	75	5	90	40	11	11	37	1.77
13980679--13980755	20	3.8	20	81	3	91	35	9	18	37	1.82
13980795--13980835	21	2.0	21	85	0	55	36	7	19	36	1.80
13980652--13980834	99	1.8	99	82	4	235	35	10	19	34	1.86
13981273--13981882	44	14.1	44	83	7	687	23	12	19	45	1.84
13981273--13981882	86	7.0	86	82	7	650	23	12	19	45	1.84
13982989--13983063	11	6.7	11	76	15	57	12	1	12	74	1.13
13983255--13983289	16	2.2	16	94	0	61	80	5	0	14	0.89
13983261--13983290	8	3.8	8	90	0	51	76	3	0	20	0.92
13985167--13986004	185	4.5	186	85	2	1013	32	14	12	40	1.84
13985925--13986078	74	2.1	74	83	0	191	33	16	9	40	1.81
13986749--13986794	13	3.6	14	80	16	55	15	4	36	43	1.66
13986749--13986796	25	1.9	25	91	0	78	14	4	35	45	1.64
13986754--13986808	25	2.2	25	83	0	65	14	7	36	41	1.74
13992619--13992674	26	2.2	25	87	3	76	51	10	7	30	1.63
13993235--13993294	19	3.2	19	71	4	50	55	11	10	23	1.66
13993255--13993325	29	2.4	29	81	4	72	50	11	12	25	1.73
13993263--13993333	29	2.4	29	85	0	88	53	12	11	22	1.70
13993462--13993527	28	2.3	30	84	10	84	40	4	1	53	1.31
13994505--13994544	21	1.9	21	85	10	55	40	10	2	47	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13994539--13994584	19	2.3	21	88	7	69	30	0	0	69	0.89
13998362--13998433	22	3.3	22	76	3	65	55	13	9	20	1.67
14000040--14000119	29	2.8	29	78	3	90	21	12	15	51	1.75
14000696--14000838	31	4.7	31	73	18	108	57	11	3	27	1.50
14000726--14000801	12	5.7	12	73	21	62	59	10	1	28	1.39
14000789--14000829	14	2.9	15	82	10	50	58	7	4	29	1.46
14000723--14000810	27	3.2	27	80	10	108	59	10	2	28	1.42
14001011--14001083	17	4.2	17	70	19	51	78	5	4	12	1.07
14001027--14001116	20	4.8	19	72	18	73	77	7	2	12	1.06
14001010--14001118	14	7.9	13	74	12	76	76	7	2	13	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117