genome.fa.s90.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  20  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5812560--5812616	21	2.9	20	76	19	66	56	3	0	40	1.17
5813319--5813373	28	2.0	28	81	0	65	32	10	1	54	1.46
5815421--5815734	165	1.9	166	87	0	459	28	16	12	42	1.84
5820115--5820371	95	2.7	93	80	7	284	28	9	23	38	1.86
5820666--5820699	15	2.2	16	89	5	52	44	0	5	50	1.26
5828916--5828967	16	3.2	16	76	17	54	55	0	1	42	1.10
5830582--5830669	40	2.2	40	83	4	106	38	14	2	44	1.58
5830574--5830912	111	3.1	109	77	7	301	33	9	7	48	1.65
5830963--5831105	71	2.0	73	86	5	202	34	8	6	49	1.60
5833398--5833447	22	2.3	23	79	10	59	36	12	12	40	1.79
5833889--5833921	17	1.9	17	93	0	57	30	6	0	63	1.18
5833890--5833924	18	1.9	18	94	0	61	31	8	0	60	1.27
5851307--5851359	24	2.2	25	83	12	67	35	1	3	58	1.27
5851348--5851405	30	1.9	30	82	0	71	39	5	3	51	1.41
5851397--5851454	24	2.5	23	86	8	82	44	1	3	50	1.29
5866423--5866465	2	21.5	2	100	0	86	51	0	48	0	1.00
5872007--5872176	72	2.4	72	84	0	196	25	22	27	24	2.00
5872025--5872188	36	4.6	36	88	1	213	27	20	27	25	1.99
5877771--5877842	25	3.0	23	75	15	74	51	0	2	45	1.15
5877844--5877882	21	1.9	21	89	5	62	43	5	5	46	1.48
5886628--5886878	119	2.1	121	80	8	282	33	5	5	54	1.49
5888904--5889113	73	2.8	73	79	5	190	35	9	3	51	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5889156--5889393	116	2.1	114	81	5	266	34	9	6	49	1.61
5894075--5894116	2	21.0	2	100	0	84	50	0	50	0	1.00
5894987--5895020	15	2.3	15	89	0	50	23	38	0	38	1.55
5895476--5895544	34	2.0	34	100	0	138	60	15	8	14	1.57
5896003--5896031	2	14.5	2	100	0	58	51	0	0	48	1.00
5897831--5897904	34	2.2	34	83	9	89	37	12	6	43	1.69
5897907--5897986	34	2.4	33	83	10	99	35	13	8	42	1.76
5898798--5898824	7	3.9	7	100	0	54	29	11	14	44	1.80
5915618--5915664	22	2.2	20	82	14	51	10	34	0	55	1.35
5920186--5920229	3	14.7	3	100	0	88	68	0	0	31	0.90
5923957--5923999	22	2.0	22	85	0	59	74	0	18	6	1.04
5924996--5925162	41	4.0	41	88	3	219	24	16	22	36	1.94
5924996--5925162	83	2.0	82	84	3	219	24	16	22	36	1.94
5925324--5925423	6	16.3	6	75	12	71	18	3	2	77	1.00
5925358--5925437	24	3.2	25	73	23	71	22	1	2	73	1.02
5925518--5925580	22	2.9	21	81	9	65	23	3	7	65	1.34
5925857--5925906	13	3.7	14	78	7	59	24	4	16	56	1.57
5925859--5925916	26	2.3	26	82	8	66	29	3	12	55	1.53
5926380--5926420	6	7.0	6	86	5	57	14	2	2	80	0.92
5926381--5926468	23	4.0	22	71	16	67	14	4	2	78	1.01
5926380--5926468	17	5.4	17	77	11	71	14	4	2	78	1.00
5926390--5926473	13	6.3	13	73	16	57	14	4	2	78	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5926390--5926468	18	4.4	18	73	19	67	13	3	2	79	0.97
5926464--5926587	57	2.2	55	77	7	131	45	6	9	37	1.63
5926502--5926887	59	6.4	55	72	18	256	43	6	11	37	1.67
5926569--5926604	17	2.1	17	100	0	72	33	16	5	44	1.71
5926512--5926661	74	2.0	74	93	0	255	43	7	10	38	1.67
5926576--5926616	17	2.4	17	87	0	55	36	14	2	46	1.58
5926586--5926887	59	5.3	55	82	7	289	43	6	11	38	1.67
5926708--5926744	17	2.2	17	90	0	56	37	5	0	56	1.22
5928431--5928477	22	2.1	22	88	4	67	21	4	48	25	1.68
5928882--5928915	16	2.1	16	94	0	59	35	0	0	64	0.94
5929234--5929259	3	8.7	3	100	0	52	34	0	0	65	0.93
5929464--5929536	26	2.7	26	75	12	67	43	0	1	54	1.08
5929473--5929610	45	3.2	42	75	21	117	50	0	0	49	1.05
5929519--5929597	40	2.0	39	88	11	117	51	0	1	46	1.08
5929917--5929962	18	2.5	18	82	10	58	60	2	0	36	1.09
5934328--5934396	27	2.6	27	81	6	86	34	30	5	28	1.81
5945418--5945466	2	25.0	2	83	4	64	44	0	2	53	1.12
5946647--5946695	25	1.9	26	83	4	64	42	4	0	53	1.20
5947533--5947576	22	2.0	22	100	0	88	45	9	18	27	1.79
5947657--5947692	15	2.4	15	86	13	56	44	0	2	52	1.15
5949136--5949229	47	2.0	47	82	0	116	28	11	17	42	1.84
5950403--5950432	4	7.2	4	92	7	51	73	0	0	26	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5955165--5955218	19	2.9	17	77	17	54	51	0	0	48	1.00
5955981--5956096	30	3.8	30	74	16	105	42	7	0	49	1.37
5956115--5956169	25	2.2	25	90	3	85	63	1	3	30	1.22
5958121--5958182	32	1.9	32	90	0	97	46	8	16	29	1.75
5958837--5958927	30	3.0	30	80	4	103	38	9	6	45	1.64
5958858--5959097	120	2.0	120	86	4	342	45	6	5	43	1.52
5959398--5959429	12	2.6	13	85	14	50	75	12	0	12	1.06
5963859--5963892	10	3.5	10	88	4	52	23	0	0	76	0.79
5963899--5963950	21	2.7	19	86	13	79	53	0	0	46	1.00
5963892--5963955	21	2.8	23	76	13	69	48	0	0	51	1.00
5966968--5967010	21	2.0	21	83	16	54	39	13	6	39	1.72
5969470--5969506	16	2.3	16	85	0	56	43	5	21	29	1.75
5974173--5974207	17	2.1	17	89	10	54	14	2	0	82	0.77
5974706--5974749	18	2.4	18	85	7	54	54	2	0	43	1.12
5975529--5975554	11	2.4	11	100	0	52	19	0	23	57	1.40
5975582--5975736	52	3.0	52	87	2	206	38	7	25	29	1.82
5976219--5976303	31	2.7	31	92	0	134	28	22	24	24	1.99
5976346--5976422	25	3.2	25	75	3	77	35	7	33	23	1.84
5976679--5976835	52	3.0	52	86	1	199	42	8	22	26	1.83
5977593--5977700	30	3.6	30	78	9	121	43	6	0	50	1.28
5977585--5977700	61	1.9	61	84	8	157	42	6	0	50	1.29
5977718--5977786	30	2.3	30	85	7	88	60	1	5	31	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5977745--5977800	28	2.0	28	82	6	69	57	3	5	33	1.39
5977745--5977803	29	2.1	28	81	9	66	57	3	5	33	1.37
5978123--5978160	19	2.0	19	90	10	60	68	5	2	23	1.23
5980365--5980455	30	3.0	30	75	9	87	42	8	3	45	1.51
5981853--5981896	23	2.0	23	86	4	63	50	13	0	36	1.42
5981892--5981930	16	2.4	16	86	0	60	82	0	0	17	0.68
5982892--5982936	12	3.7	12	83	13	56	2	6	8	82	0.93
5982940--5982979	15	2.7	14	88	7	53	40	0	0	60	0.97
5985049--5985114	30	2.2	30	86	5	89	40	6	4	48	1.48
5988583--5988609	3	9.0	3	100	0	54	66	0	0	33	0.92
5989598--5989657	14	4.2	14	77	10	50	38	0	0	61	0.96
5989595--5989640	18	2.6	18	82	3	58	39	0	0	60	0.97
5989618--5989654	8	4.6	8	86	0	56	43	0	0	56	0.99
5989618--5989671	14	3.6	16	80	14	62	46	0	0	53	1.00
5989644--5989694	20	2.6	20	88	11	79	49	0	0	50	1.00
5989644--5989693	21	2.5	21	93	6	86	50	0	0	50	1.00
5990924--5991036	33	3.4	33	76	0	109	27	30	25	16	1.97
5994466--5994718	112	2.3	112	78	2	267	42	5	9	43	1.58
5995794--5996029	63	3.8	63	75	9	196	42	8	11	38	1.71
5996083--5996144	34	1.9	33	87	9	92	51	6	1	40	1.37
5998166--5998213	22	2.2	22	81	7	53	56	4	4	35	1.38
6007137--6007182	24	1.9	24	82	8	58	36	36	8	17	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6007235--6007274	9	4.4	9	83	0	53	7	40	15	37	1.75
6008834--6008875	22	1.9	22	100	0	84	42	30	11	14	1.81
6017050--6017097	22	2.2	23	85	7	64	62	6	0	31	1.20
6018514--6018543	3	10.0	3	100	0	60	66	0	0	33	0.92
6023797--6023930	30	4.5	30	91	0	205	52	11	9	26	1.68
6024382--6024423	21	2.0	21	95	0	75	30	23	2	42	1.67
6027332--6027372	17	2.4	17	80	11	57	36	0	0	63	0.95
6031466--6031507	20	2.1	20	95	0	75	35	0	26	38	1.57
6033513--6033537	13	1.9	13	100	0	50	8	8	36	48	1.62
6041541--6041581	18	2.3	19	83	12	59	39	0	2	58	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117