genome.fa.s90.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  114  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20405022--20405109	26	3.4	26	100	0	176	28	20	25	26	1.99
20406834--20406886	26	2.0	26	96	0	97	24	22	26	26	2.00
20407737--20407789	26	2.0	26	88	0	79	28	16	24	30	1.97
20408618--20408670	26	2.0	26	92	0	88	24	18	28	28	1.98
20409613--20409665	26	2.0	26	85	0	70	30	20	20	28	1.98
20411393--20411443	26	2.0	26	100	0	102	27	19	29	23	1.98
20412289--20412341	26	2.0	26	100	0	106	26	20	26	26	1.99
20414085--20414137	26	2.0	26	92	0	88	28	18	24	28	1.98
20403400--20416952	898	15.1	898	80	7	13684	25	24	24	26	2.00
20416752--20417108	159	2.2	160	84	3	434	23	29	27	19	1.98
20416752--20417169	159	2.6	158	82	4	401	22	29	29	18	1.97
20417762--20417812	26	2.0	26	88	0	75	29	13	27	29	1.94
20418594--20418646	26	2.0	26	88	0	79	24	16	28	30	1.97
20419497--20419575	26	3.0	26	92	0	131	29	17	24	29	1.97
20420421--20420496	26	2.9	26	90	2	116	30	14	23	31	1.94
20421347--20421399	26	2.0	26	96	0	97	26	18	26	28	1.98
20422240--20422292	26	2.0	26	96	0	97	26	18	26	28	1.98
20422531--20423104	294	2.0	294	89	0	880	26	16	18	37	1.92
20423416--20423466	26	2.0	26	100	0	102	27	19	25	27	1.99
20426051--20426101	26	2.0	26	100	0	102	27	19	27	25	1.99
20428529--20428584	26	2.2	26	96	0	103	26	17	26	28	1.98
20430235--20430287	26	2.0	26	85	0	70	28	20	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20431126--20431178	26	2.0	26	92	0	88	28	18	24	28	1.98
20429369--20432435	884	3.4	887	89	2	4459	25	24	25	25	2.00
20432010--20432062	26	2.0	26	96	0	97	30	18	22	28	1.98
20432759--20432814	26	2.2	26	96	0	103	26	17	26	28	1.98
20431695--20433184	749	2.0	738	85	3	2015	24	26	26	22	2.00
20434458--20434510	26	2.0	26	88	0	79	28	18	22	30	1.98
20435295--20435335	17	2.4	17	91	0	64	26	41	21	9	1.84
20435366--20435418	26	2.0	26	96	0	97	28	20	24	26	1.99
20436257--20436311	28	2.0	27	89	6	85	30	18	21	29	1.97
20433598--20443340	907	10.9	889	80	8	9669	25	24	24	25	2.00
20437165--20437217	26	2.0	26	89	7	81	28	16	24	30	1.97
20438066--20438118	26	2.0	26	85	0	70	32	20	18	28	1.97
20433591--20441189	907	8.5	897	86	4	9677	25	24	24	25	2.00
20438972--20439024	26	2.0	26	88	0	79	26	16	26	30	1.97
20440762--20440815	26	2.0	27	89	3	83	31	20	24	24	1.98
20441835--20441887	26	2.0	26	100	0	106	26	20	26	26	1.99
20443428--20443467	9	4.3	9	84	6	53	0	15	2	82	0.77
20443428--20443467	18	2.2	19	90	4	64	0	15	2	82	0.77
20443472--20443606	4	32.8	4	66	21	50	28	2	2	65	1.19
20443480--20443560	32	2.5	31	81	13	85	27	2	2	67	1.15
20444177--20444212	11	3.3	11	96	0	63	13	33	27	25	1.94
20444488--20444518	15	2.1	15	93	0	53	22	32	38	6	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20444546--20444602	25	2.3	25	78	6	62	15	1	7	75	1.10
20444553--20444594	22	2.0	22	85	4	59	9	2	4	83	0.88
20444606--20444645	17	2.4	16	84	8	53	22	5	0	72	1.04
20444632--20444679	17	2.8	17	78	9	53	12	6	2	79	1.01
20444632--20444689	14	4.2	14	76	8	57	13	6	1	77	1.05
20444655--20444694	14	2.5	17	73	23	50	15	10	0	75	1.05
20444697--20444875	59	3.0	59	90	4	279	45	8	12	33	1.72
20444697--20444875	60	3.0	60	90	1	288	45	8	12	33	1.72
20448749--20448835	22	4.0	22	80	7	97	72	0	21	5	1.05
20450083--20450422	42	8.1	42	93	2	535	24	17	23	34	1.96
20450083--20450422	125	2.7	125	94	1	583	24	17	23	34	1.96
20450083--20450422	83	4.1	82	91	2	527	24	17	23	34	1.96
20450429--20450473	1	45.0	1	86	0	63	93	6	0	0	0.35
20450429--20450473	15	3.1	15	93	3	74	93	6	0	0	0.35
20450676--20450832	16	10.2	16	69	20	72	28	1	3	66	1.17
20450684--20450832	4	37.8	4	69	20	52	28	2	2	67	1.15
20450750--20450814	17	3.8	17	76	21	57	32	1	3	63	1.19
20450783--20450834	10	5.2	10	75	9	52	28	0	0	71	0.87
20451435--20451483	20	2.5	20	79	0	62	36	22	22	18	1.95
20451879--20451918	17	2.4	16	84	8	53	22	5	0	72	1.04
20451905--20451952	17	2.8	17	78	9	53	12	6	2	79	1.01
20451905--20451962	14	4.2	14	76	8	57	13	6	1	77	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20451928--20451967	14	2.5	17	73	23	50	15	10	0	75	1.05
20451970--20452264	58	5.0	59	87	5	418	44	7	12	34	1.72
20451970--20452264	118	2.5	117	88	4	441	44	7	12	34	1.72
20452055--20452146	28	3.1	28	62	27	64	40	6	16	36	1.74
20453763--20453812	26	1.9	26	95	0	91	30	22	24	24	1.99
20452763--20456574	896	4.2	898	88	1	5201	25	24	24	25	2.00
20454659--20454711	26	2.0	26	100	0	106	26	20	26	26	1.99
20458097--20458149	26	2.0	26	92	0	88	30	18	24	26	1.98
20458563--20459212	332	2.0	331	88	4	979	28	22	21	27	1.99
20459329--20459380	25	2.0	26	85	3	70	28	21	21	28	1.98
20460225--20460275	26	2.0	26	96	0	93	33	17	23	25	1.96
20461093--20461145	26	2.0	26	100	0	106	26	20	26	26	1.99
20458895--20461320	868	2.8	865	86	4	3341	25	24	25	25	2.00
20462421--20462470	25	2.0	26	92	4	84	32	20	22	26	1.98
20461324--20466748	900	6.1	896	85	5	6789	25	24	24	25	2.00
20465972--20466024	26	2.0	26	92	0	88	26	16	26	30	1.97
20466241--20468843	700	3.7	700	79	7	3057	25	23	23	26	2.00
20468949--20469001	26	2.0	26	96	0	97	24	16	26	32	1.97
20468220--20472798	866	5.2	865	81	9	5062	24	24	25	25	2.00
20471452--20471484	11	3.0	11	95	0	57	18	33	27	21	1.96
20471564--20471615	26	2.0	26	92	0	86	28	17	25	28	1.97
20471796--20471821	4	6.5	4	100	0	52	0	26	73	0	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20472472--20472524	26	2.0	26	92	0	88	26	18	24	30	1.98
20473299--20473351	26	2.0	26	92	0	88	24	18	28	28	1.98
20474206--20474258	26	2.0	26	92	0	88	30	20	22	26	1.98
20472799--20479760	882	7.8	883	84	5	8550	25	24	24	25	2.00
20475087--20475139	26	2.0	26	92	0	88	24	18	24	32	1.97
20475970--20476021	25	2.0	26	96	3	97	26	21	25	26	1.99
20476857--20476909	26	2.0	26	96	0	97	28	20	24	26	1.99
20478622--20478701	26	3.1	26	94	0	142	27	18	27	26	1.98
20479549--20479601	26	2.0	26	88	0	79	30	18	22	28	1.98
20479734--20479786	26	2.0	26	96	0	97	28	20	24	26	1.99
20479521--20479937	185	2.3	185	89	4	644	23	28	28	20	1.99
20482268--20482324	25	2.3	24	79	8	60	31	7	10	50	1.63
20480984--20485374	875	5.0	872	85	4	5771	25	24	24	25	2.00
20483608--20483660	26	2.0	26	92	0	88	26	20	24	28	1.99
20486634--20486685	26	2.0	26	92	7	88	28	19	23	28	1.98
20487521--20487573	26	2.0	26	96	0	97	28	20	24	26	1.99
20488411--20488463	26	2.0	26	92	7	90	26	20	26	26	1.99
20489311--20489362	26	2.0	26	100	0	104	26	19	26	26	1.99
20490197--20490247	26	2.0	26	92	0	84	29	13	27	29	1.94
20491100--20491152	26	2.0	26	88	0	79	26	16	24	32	1.97
20492000--20492052	26	2.0	26	96	0	97	26	18	26	28	1.98
20492907--20492958	26	2.0	26	92	0	86	30	19	23	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20485378--20494086	898	9.7	901	86	3	11330	25	24	25	25	2.00
20493808--20493860	26	2.0	26	92	7	90	26	24	24	24	2.00
20494648--20494700	26	2.0	26	92	7	90	26	16	26	30	1.97
20493410--20502857	902	10.8	835	72	15	2545	25	24	24	25	2.00
20498122--20498174	26	2.0	26	100	0	106	26	20	26	26	1.99
20499014--20499064	26	2.0	26	96	0	93	31	19	21	27	1.97
20497417--20499880	885	2.8	884	87	2	3457	25	23	24	26	2.00
20499824--20499933	58	1.9	58	82	0	139	30	28	27	14	1.95
20499979--20500029	26	2.0	26	84	0	66	33	15	23	27	1.95
20501725--20501775	26	2.0	26	96	0	93	27	19	25	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117