genome.fa.s90.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  52  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11844416--11844457	18	2.3	18	84	8	50	35	4	14	45	1.66
11848569--11848633	20	3.2	20	87	8	105	18	0	16	64	1.29
11851839--11851873	18	2.0	17	88	5	52	37	5	0	57	1.23
11851784--11851986	104	1.9	104	88	4	307	40	13	4	40	1.65
11856045--11856078	18	1.9	18	88	5	52	11	17	2	67	1.34
11857654--11857681	11	2.5	11	100	0	56	67	0	0	32	0.91
11858390--11858456	35	1.9	35	90	0	107	35	17	13	32	1.89
11858635--11858700	30	2.2	31	94	2	116	46	13	10	28	1.76
11862618--11862742	34	3.6	34	82	2	124	29	12	20	38	1.88
11870912--11871234	162	2.0	163	81	4	375	36	12	11	39	1.80
11875311--11875498	64	3.0	62	71	12	166	35	12	12	38	1.82
11875311--11875562	126	2.0	126	79	4	276	34	15	12	37	1.85
11875230--11876050	304	2.7	303	81	4	909	35	14	12	37	1.84
11876495--11876636	62	2.3	61	83	8	173	33	15	11	39	1.84
11881829--11881857	14	2.1	14	93	6	51	44	13	6	34	1.71
11885843--11885886	22	2.0	22	95	0	79	43	13	11	31	1.80
11889530--11889588	25	2.4	25	86	5	77	40	18	27	13	1.88
11889736--11889779	22	2.0	22	95	0	79	43	13	11	31	1.80
11891959--11892009	19	2.7	20	75	6	52	70	1	23	3	1.14
11893020--11893088	30	2.3	30	80	2	86	36	7	5	50	1.54
11893215--11893266	21	2.5	21	80	0	59	55	1	5	36	1.35
11893610--11893640	1	31.0	1	100	0	62	0	100	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11894396--11894444	2	25.0	2	87	4	73	55	0	0	44	0.99
11900261--11900352	33	2.8	33	77	3	98	41	19	6	32	1.77
11903006--11903037	2	16.5	2	93	6	57	53	0	0	46	1.00
11907298--11907363	29	2.3	29	80	15	82	50	6	6	37	1.52
11907456--11907511	29	2.0	28	86	6	78	50	1	0	48	1.11
11910212--11910269	4	14.5	4	92	0	62	50	10	0	39	1.37
11910634--11910690	28	2.0	28	93	0	96	35	7	3	54	1.45
11910937--11910987	9	5.4	9	81	9	66	58	3	0	37	1.16
11910902--11911089	19	9.7	19	71	12	118	56	5	3	34	1.41
11911034--11911089	10	5.7	9	80	16	58	64	5	1	28	1.26
11910957--11911057	39	2.6	39	76	13	102	58	4	3	32	1.38
11911032--11911089	30	1.9	31	89	3	91	62	6	1	29	1.31
11911044--11911089	20	2.3	20	88	7	67	63	6	2	28	1.31
11911086--11911129	19	2.3	19	88	7	63	72	4	4	18	1.19
11911126--11911171	21	2.1	21	84	4	56	58	6	4	30	1.43
11911136--11911195	21	2.9	20	85	9	68	50	6	3	40	1.45
11911146--11911201	20	2.8	21	86	10	73	51	5	3	39	1.42
11911302--11911410	19	5.5	18	70	16	58	46	5	2	44	1.40
11911537--11911583	16	2.9	16	77	0	58	80	6	2	10	0.96
11911760--11911864	18	5.8	18	72	10	72	31	3	6	58	1.42
11911719--11911783	30	2.2	30	82	0	76	24	4	6	64	1.36
11911803--11911864	9	6.8	9	76	10	63	35	3	6	54	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11911761--11911864	27	3.8	28	73	15	94	31	3	6	57	1.43
11911803--11911926	19	6.8	19	69	14	57	37	4	4	54	1.41
11911940--11911999	28	2.1	29	84	3	77	38	3	5	53	1.39
11911958--11912019	27	2.2	28	83	8	74	45	3	4	46	1.40
11911997--11912043	21	2.2	21	85	11	60	51	6	2	40	1.39
11912056--11912112	20	2.9	18	77	12	60	31	1	8	57	1.39
11912148--11912246	10	10.3	10	71	10	73	39	2	2	56	1.22
11912037--11912246	9	21.3	9	65	20	66	39	2	5	53	1.36
11912151--11912206	27	2.0	29	89	10	89	32	3	3	60	1.31
11912037--11912239	19	10.3	18	69	19	86	38	2	5	53	1.37
11915523--11915564	22	2.0	22	90	4	68	57	4	16	21	1.58
11915524--11915570	21	2.2	22	84	3	60	63	4	12	19	1.44
11916672--11916730	30	2.1	28	81	12	68	23	6	23	45	1.76
11916445--11917060	308	2.0	305	93	1	1054	33	12	14	40	1.83
11917459--11917505	3	15.7	3	90	0	76	31	31	0	36	1.58
11920939--11921107	85	2.0	85	94	0	293	39	9	15	35	1.80
11922541--11922567	2	13.5	2	100	0	54	0	0	48	51	1.00
11923151--11923218	23	2.9	24	72	16	70	41	2	2	52	1.31
11924688--11924728	21	2.0	21	90	0	64	46	7	4	41	1.53
11925252--11925301	13	3.8	13	84	7	57	30	10	0	60	1.30
11928160--11928497	51	6.6	50	78	9	279	39	14	14	31	1.86
11929414--11929485	10	6.8	10	71	12	54	4	9	6	79	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11929399--11929456	27	2.1	28	81	9	66	8	8	5	77	1.11
11937075--11937141	15	4.5	15	73	14	59	76	2	2	17	1.05
11937102--11937149	14	3.2	14	82	14	53	79	2	2	16	0.93
11937075--11937147	20	3.4	20	75	18	67	76	2	2	17	1.02
11939874--11939903	15	1.9	16	93	6	53	20	26	0	53	1.46
11942051--11942087	15	2.4	15	86	4	56	67	0	5	27	1.12
11942058--11942086	15	1.9	15	100	0	58	68	0	3	27	1.05
11943728--11943774	3	15.7	3	90	0	76	34	2	0	63	1.06
11943806--11943855	17	2.9	16	75	13	55	64	4	4	28	1.30
11951003--11951044	20	2.0	21	90	4	68	54	0	38	7	1.28
11954769--11954836	21	3.2	20	71	18	57	41	0	1	57	1.08
11954833--11954911	13	6.0	13	71	17	56	56	0	1	41	1.07
11954832--11954914	42	2.0	41	84	11	107	56	0	1	42	1.07
11954850--11954935	44	2.0	41	82	11	100	60	0	0	39	0.97
11955001--11955036	17	2.0	19	89	10	58	55	0	0	44	0.99
11956518--11956557	20	2.0	20	85	9	55	25	2	0	72	0.97
11962758--11962806	18	3.0	16	82	11	55	8	16	2	73	1.16
11966224--11966259	2	18.0	2	100	0	72	50	0	0	50	1.00
11969571--11969715	68	2.2	67	81	9	172	46	12	22	19	1.83
11969853--11969983	51	2.6	51	83	0	163	44	12	16	25	1.84
11969901--11969980	25	3.2	25	67	10	72	46	11	16	26	1.80
11970175--11970910	120	6.1	120	76	6	547	44	12	22	20	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11971662--11971713	17	3.2	17	83	5	72	0	11	5	82	0.82
11971670--11971718	17	3.3	15	86	13	66	0	12	6	81	0.86
11971990--11972023	13	2.7	13	90	4	52	0	11	5	82	0.83
11979362--11979408	21	2.3	21	82	10	53	51	2	8	38	1.45
11979464--11979737	112	2.4	115	83	4	349	47	5	9	36	1.61
11979735--11979815	37	2.2	38	84	8	105	46	7	1	44	1.39
11980371--11980448	36	2.2	36	97	0	147	50	7	5	37	1.54
11980382--11980442	19	3.3	19	67	17	56	55	9	3	31	1.48
11980964--11981014	24	2.1	24	92	0	84	68	7	0	23	1.15
11985847--11985879	13	2.7	12	90	9	57	57	0	3	39	1.14
11986372--11986406	15	2.3	15	90	9	54	34	11	14	40	1.82
11986592--11986637	22	2.1	22	87	0	65	60	2	2	34	1.21
11986736--11986779	15	2.9	15	77	9	54	56	4	0	38	1.20
11987184--11987233	26	1.9	26	88	8	75	64	2	2	32	1.16
11987498--11987528	2	15.5	2	100	0	62	0	48	0	51	1.00
11988204--11988286	26	3.1	28	75	22	88	74	0	4	20	0.99
11988207--11988287	17	4.8	16	79	15	83	75	0	4	19	0.98
11988303--11988368	7	9.6	7	76	14	50	69	1	3	25	1.11
11989959--11990141	11	15.7	11	71	18	70	68	1	7	22	1.22
11989969--11990090	19	6.1	20	77	18	85	69	0	5	23	1.15
11990016--11990088	7	10.7	7	73	24	59	72	0	2	24	0.98
11990016--11990087	27	2.6	28	87	12	98	72	0	2	25	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11990016--11990088	34	2.1	34	83	14	89	72	0	2	24	0.98
11990006--11990144	6	22.7	6	70	11	68	69	1	5	23	1.16
11997006--11997116	33	3.3	34	80	8	104	45	9	10	34	1.70
11997469--11997502	15	2.3	15	100	0	68	55	11	0	32	1.36
11998420--11998881	161	2.9	159	83	4	554	42	14	9	33	1.77
11998954--11999024	29	2.4	30	79	6	83	74	9	8	7	1.22
11999392--11999462	27	2.5	28	76	19	76	78	0	14	7	0.94
12011903--12011958	26	2.2	24	84	9	67	73	3	7	16	1.20
12020301--12020330	12	2.4	12	94	5	51	40	16	0	43	1.48
12020411--12020447	2	18.5	2	88	0	56	48	5	0	45	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117