genome.fa.s90.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  80  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16021464--16021502	10	4.0	9	87	12	51	53	0	0	46	1.00
16022509--16022543	17	2.1	17	94	5	63	51	0	0	48	1.00
16024092--16024218	25	5.1	25	66	29	67	48	2	0	48	1.20
16024586--16024728	3	49.3	3	68	21	65	41	0	2	55	1.16
16024586--16024690	23	4.7	22	75	14	83	41	0	1	55	1.17
16024591--16024760	15	12.8	14	68	23	77	41	0	2	55	1.17
16024581--16024710	57	2.3	59	85	9	180	42	0	1	55	1.14
16024607--16024760	35	4.4	34	74	16	93	41	0	1	55	1.15
16024664--16024715	20	2.6	19	84	9	59	42	0	1	55	1.10
16024666--16024764	50	2.0	50	92	7	166	41	0	3	55	1.15
16024608--16024760	37	4.2	37	73	20	103	41	0	1	56	1.15
16024981--16025021	21	2.0	21	85	9	57	41	0	0	58	0.98
16025020--16025075	24	2.4	24	80	17	64	50	0	3	46	1.19
16025002--16025114	58	1.9	58	82	7	140	49	0	2	47	1.15
16025162--16025256	15	6.3	15	73	20	65	49	1	3	46	1.24
16025474--16025520	21	2.1	22	85	14	62	40	2	2	55	1.24
16026255--16026326	28	2.5	27	80	15	74	50	0	2	47	1.15
16026288--16026342	16	3.7	15	74	11	51	50	0	1	47	1.11
16026316--16026406	13	6.8	13	72	18	53	49	1	3	46	1.25
16026378--16026423	18	2.4	19	85	7	58	47	0	2	50	1.13
16026304--16026439	62	2.2	61	77	12	143	47	0	4	47	1.27
16026485--16026573	7	13.0	7	75	14	53	44	4	1	49	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16026512--16026560	11	4.5	11	80	12	57	51	0	0	48	1.00
16026475--16026560	22	4.0	21	69	13	59	47	3	1	47	1.26
16026761--16026818	23	2.6	23	74	17	59	50	1	1	46	1.22
16027217--16027265	23	2.1	24	85	11	66	48	2	0	48	1.12
16027242--16027276	14	2.6	13	86	8	52	57	2	0	40	1.14
16027306--16027406	24	4.2	24	68	24	61	48	0	3	47	1.20
16027307--16027366	28	2.1	28	81	6	68	46	0	3	50	1.18
16027313--16027357	18	2.5	19	79	13	60	44	0	0	55	0.99
16027317--16027370	28	1.9	28	88	0	81	46	0	1	51	1.11
16027468--16027565	42	2.3	40	73	23	94	47	2	1	48	1.19
16027530--16027557	13	2.2	13	100	0	56	50	0	0	50	1.00
16027578--16027634	28	2.1	26	80	6	60	43	5	1	49	1.35
16027672--16027702	11	2.8	11	90	0	53	51	6	3	38	1.44
16028465--16028506	12	3.2	13	76	10	50	35	0	2	61	1.09
16028781--16028831	21	2.4	22	83	12	70	52	0	3	43	1.19
16028859--16028899	21	1.9	22	85	5	57	43	0	2	53	1.13
16028915--16029020	13	7.4	14	66	23	51	54	1	0	43	1.11
16028923--16028995	21	3.5	20	76	12	65	52	2	0	45	1.15
16029535--16029571	14	2.6	14	91	4	56	56	0	0	43	0.99
16029540--16029588	18	2.7	18	85	14	66	55	0	0	44	0.99
16029527--16029596	32	2.1	34	82	15	85	52	0	1	45	1.09
16029530--16029610	24	3.4	23	78	10	74	51	1	1	45	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16029719--16029757	21	1.9	20	89	5	60	51	5	2	41	1.38
16029741--16029814	18	4.1	18	77	11	71	54	4	0	41	1.19
16029741--16029825	36	2.3	37	82	6	102	51	3	0	44	1.18
16031136--16031188	26	2.0	26	92	0	88	28	24	18	28	1.98
16032897--16032948	26	2.0	26	96	0	95	26	25	19	28	1.98
16034665--16034717	26	2.0	26	92	0	88	32	24	15	28	1.95
16034506--16034931	185	2.3	185	85	0	584	21	27	27	23	1.99
16034850--16034902	26	2.0	26	96	0	97	26	24	20	28	1.99
16035733--16035785	26	2.0	26	96	0	97	26	24	20	28	1.99
16034876--16040059	864	5.9	868	85	5	6610	25	24	24	25	2.00
16038357--16038409	26	2.0	26	96	0	97	26	28	20	24	1.99
16039262--16039312	26	2.0	26	92	0	84	29	21	19	29	1.98
16036623--16040059	903	3.9	895	87	4	4626	25	24	24	24	2.00
16039288--16041473	707	3.1	705	91	1	3313	27	24	23	25	2.00
16043358--16043410	26	2.0	26	88	0	79	24	24	20	30	1.99
16040711--16044114	891	3.8	891	85	5	4455	25	25	24	25	2.00
16044091--16044140	25	2.0	26	92	4	84	28	26	16	30	1.96
16045883--16045935	26	2.0	26	88	0	79	30	24	16	28	1.97
16044058--16059569	905	17.3	901	85	4	18814	25	24	24	25	2.00
16046773--16046851	26	3.0	26	96	0	140	27	25	18	27	1.98
16047704--16047756	26	2.0	26	96	0	97	28	26	18	26	1.98
16048401--16048428	8	3.5	8	100	0	56	10	64	14	10	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16049493--16049545	26	2.0	26	96	0	97	32	26	15	26	1.95
16053038--16053116	26	3.0	26	96	0	140	29	26	16	27	1.97
16053964--16054015	26	2.0	26	92	3	88	26	23	21	28	1.99
16054852--16054901	26	1.9	26	95	0	91	26	24	20	30	1.98
16056624--16056676	26	2.0	26	96	0	97	26	24	18	30	1.98
16057538--16057596	26	2.3	26	88	5	95	30	27	16	25	1.97
16058434--16058486	26	2.0	26	100	0	106	26	22	20	30	1.98
16055749--16059569	896	4.2	894	86	3	5092	25	24	24	25	2.00
16059345--16059397	26	2.0	26	100	0	106	26	26	20	26	1.99
16059953--16060005	26	2.0	26	92	0	88	28	20	22	28	1.99
16060853--16060905	26	2.0	26	88	0	79	30	18	18	32	1.96
16059573--16063137	900	4.0	902	87	2	4886	25	24	24	25	2.00
16061751--16061807	26	2.2	26	83	0	78	35	19	17	28	1.94
16064265--16064343	26	3.0	26	96	0	140	26	26	20	26	1.99
16065177--16065229	26	2.0	26	100	0	106	26	26	20	26	1.99
16066073--16066125	26	2.0	26	88	0	79	26	24	16	32	1.97
16066975--16067027	26	2.0	26	92	7	90	26	22	20	30	1.98
16069679--16069731	26	2.0	26	92	0	88	26	26	20	26	1.99
16063399--16071521	900	9.1	898	86	3	10757	25	24	24	25	2.00
16071451--16071503	26	2.0	26	92	0	88	26	26	20	26	1.99
16072037--16072086	26	1.9	26	95	0	91	26	28	20	26	1.99
16071644--16075546	875	4.4	869	85	5	4892	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16075544--16075613	26	2.7	26	90	0	122	24	24	20	31	1.98
16076201--16076437	58	4.0	59	87	5	336	34	12	8	45	1.72
16076445--16076502	14	4.2	14	76	8	57	77	1	6	13	1.05
16076452--16076502	17	2.9	17	76	21	52	78	1	5	13	1.02
16076489--16076528	17	2.4	16	84	8	53	72	0	5	22	1.04
16076952--16077001	20	2.5	20	96	0	91	18	18	24	40	1.91
16077673--16077724	25	2.0	25	85	3	68	65	1	5	26	1.26
16078577--16078629	26	2.0	26	92	7	90	26	24	20	28	1.99
16079469--16079521	26	2.0	26	96	0	97	26	24	20	28	1.99
16082139--16082191	26	2.0	26	92	0	88	30	26	16	26	1.97
16083035--16083087	26	2.0	26	92	7	90	30	26	16	26	1.97
16081272--16096615	896	17.3	894	84	5	18693	25	24	24	25	2.00
16084824--16084876	26	2.0	26	85	7	72	33	24	15	26	1.95
16089272--16089324	26	2.0	26	88	0	79	26	24	20	28	1.99
16090161--16090216	26	2.2	26	93	0	94	28	23	17	30	1.97
16093631--16093683	26	2.0	26	96	0	97	26	24	20	28	1.99
16095437--16095489	26	2.0	26	92	0	88	28	24	18	28	1.98
16092761--16096615	894	4.3	891	84	4	4824	25	24	24	25	2.00
16099239--16099301	26	2.4	27	87	10	96	31	23	17	26	1.97
16096625--16100792	871	4.7	873	85	5	5097	26	24	23	24	2.00
16100118--16100172	26	2.1	26	93	0	92	32	23	14	29	1.94
16100731--16101112	192	2.0	187	84	5	500	21	28	25	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16101198--16101250	26	2.0	26	92	0	88	28	26	16	28	1.97
16102096--16102148	26	2.0	26	92	0	88	26	26	20	26	1.99
16100917--16103699	892	3.1	887	86	3	3838	25	25	24	25	2.00
16102987--16103039	26	2.0	26	88	0	79	28	26	18	26	1.98
16105579--16105631	26	2.0	26	100	0	106	26	26	20	26	1.99
16106164--16107597	384	3.9	362	84	5	1691	22	29	23	24	1.99
16106839--16106890	26	2.0	26	92	0	86	25	25	19	30	1.98
16106490--16107654	380	3.1	380	88	1	1715	23	28	22	25	1.99
16107220--16107274	26	2.1	26	96	0	101	30	25	16	27	1.96
16107600--16107673	26	2.8	26	100	0	148	25	27	20	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117