genome.fa.s90.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  45  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10623923--10623964	12	3.4	12	83	6	57	23	9	26	40	1.85
10627071--10627140	36	2.0	35	82	2	86	40	18	7	34	1.78
10631265--10631306	18	2.3	18	80	8	50	50	0	0	50	1.00
10633346--10633440	50	1.9	49	82	2	118	30	12	9	47	1.73
10635129--10635493	43	8.6	43	85	2	477	41	19	12	26	1.87
10638905--10639212	43	7.3	43	82	6	312	45	18	9	25	1.80
10638905--10639211	126	2.4	125	83	5	373	45	18	9	26	1.80
10638905--10639214	83	3.7	82	86	5	397	45	19	9	26	1.81
10649549--10649619	34	2.1	34	89	5	108	52	5	19	22	1.67
10650652--10650768	53	2.3	50	82	8	128	31	18	8	41	1.81
10651149--10651186	8	4.8	8	90	0	58	18	0	2	78	0.86
10655183--10655221	8	4.8	8	84	6	51	20	0	2	76	0.90
10661961--10662038	35	2.2	35	86	2	102	33	10	12	43	1.77
10662989--10663135	52	2.8	52	85	2	197	27	25	7	40	1.82
10663422--10663471	25	2.0	26	88	4	75	26	38	8	28	1.84
10664050--10664206	52	3.0	52	81	5	192	26	24	8	40	1.83
10664231--10664261	11	2.8	11	100	0	62	51	29	0	19	1.47
10670460--10670499	10	3.8	10	81	12	53	25	0	0	75	0.81
10672136--10672208	26	3.0	24	80	9	85	30	1	1	67	1.08
10672162--10672202	21	2.0	20	90	4	64	29	0	2	68	1.03
10673762--10673808	23	2.0	24	91	4	78	2	57	0	40	1.11
10673768--10673816	23	2.2	22	82	10	55	2	57	2	38	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10673978--10674104	59	2.2	57	82	2	164	19	3	21	55	1.56
10675668--10675717	15	3.0	15	75	25	55	30	8	18	44	1.78
10677427--10677582	75	2.1	74	78	3	161	33	15	11	39	1.83
10679463--10679508	24	1.9	23	83	16	58	45	26	0	28	1.54
10680155--10680457	62	4.8	62	78	8	270	33	16	13	36	1.88
10680155--10680446	128	2.3	126	81	6	306	32	15	14	37	1.88
10680068--10680428	190	1.9	190	83	0	470	32	14	13	40	1.84
10680327--10680666	185	1.8	186	80	3	407	37	13	14	35	1.85
10683047--10683108	29	2.1	29	82	11	74	48	11	9	30	1.71
10685042--10685080	20	1.9	20	85	15	53	51	10	7	30	1.64
10685221--10685268	20	2.4	20	76	13	62	52	12	4	31	1.58
10688342--10688422	24	3.6	23	75	14	71	43	0	2	54	1.13
10688363--10688404	20	2.1	20	82	8	50	45	0	2	52	1.13
10693169--10693207	20	2.0	20	89	0	60	25	2	0	71	0.98
10694428--10694458	5	6.2	5	100	0	62	0	19	41	38	1.51
10695762--10695812	16	3.1	16	83	8	59	19	1	3	74	1.07
10697606--10697644	3	13.0	3	100	0	78	33	0	0	66	0.92
10707608--10707638	2	15.5	2	100	0	62	0	48	0	51	1.00
10708789--10708875	28	3.2	28	65	22	67	40	11	21	26	1.87
10708779--10708882	54	1.9	53	92	1	172	39	13	21	25	1.90
10714809--10714880	35	2.1	35	91	0	117	34	8	13	43	1.75
10721496--10721535	10	3.8	10	81	12	53	25	0	0	75	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10723136--10723205	23	2.9	23	80	12	86	30	1	1	67	1.08
10723137--10723205	26	2.8	24	81	10	86	28	1	1	68	1.07
10724742--10724788	23	2.0	24	91	4	78	2	57	0	40	1.11
10724748--10724796	23	2.2	22	82	10	55	2	57	2	38	1.22
10724957--10725082	59	2.2	57	85	2	171	19	3	21	54	1.60
10725229--10725287	20	2.9	20	87	2	82	18	0	23	57	1.40
10726666--10726715	15	3.0	15	75	25	55	30	8	18	44	1.78
10731027--10731297	62	4.3	62	74	7	215	33	12	12	41	1.81
10732377--10732490	57	2.0	57	96	0	210	42	7	13	37	1.71
10734012--10734073	29	2.1	29	82	11	74	48	11	9	30	1.71
10735996--10736043	21	2.2	22	78	14	55	54	8	4	33	1.50
10736181--10736228	20	2.4	20	76	13	62	52	12	4	31	1.58
10739300--10739380	24	3.6	23	75	14	71	43	0	2	54	1.13
10739321--10739362	20	2.1	20	82	8	50	45	0	2	52	1.13
10745383--10745413	5	6.2	5	100	0	62	0	19	41	38	1.51
10746715--10746765	16	3.1	16	83	8	59	19	1	3	74	1.07
10748563--10748622	3	20.0	3	100	0	120	33	0	0	66	0.92
10753665--10753712	2	24.0	2	100	0	96	0	0	50	50	1.00
10758629--10758655	2	13.5	2	100	0	54	0	48	0	51	1.00
10759805--10759891	28	3.2	28	65	22	67	40	11	21	26	1.87
10759795--10759898	54	1.9	53	92	1	172	39	13	21	25	1.90
10763948--10763981	17	2.0	17	94	0	59	23	14	17	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10770015--10770062	24	1.9	26	87	8	73	22	6	2	68	1.23
10770183--10770237	23	2.5	22	82	8	67	72	5	0	21	1.04
10771213--10771246	17	2.1	16	88	5	50	88	0	11	0	0.52
10771966--10772051	42	2.0	42	86	0	118	41	19	8	30	1.80
10771987--10772117	41	3.2	42	78	11	119	43	18	8	29	1.79
10772017--10772130	41	2.8	39	76	10	111	42	16	10	29	1.82
10772375--10772455	35	2.2	37	89	6	121	40	9	13	35	1.78
10772398--10772470	35	2.1	35	86	0	101	42	10	12	34	1.78
10774112--10774156	23	2.0	23	81	0	54	11	11	0	77	0.99
10794197--10794221	9	2.8	9	100	0	50	0	0	88	12	0.53
10795305--10795354	22	2.3	22	92	0	82	46	20	6	28	1.74
10795629--10795665	18	2.0	19	89	5	58	78	0	8	13	0.96
10801853--10801904	27	1.9	27	88	7	79	57	11	0	30	1.34
10801931--10801969	19	2.1	19	90	0	60	71	12	0	15	1.14
10809458--10809512	23	2.5	21	78	16	58	54	0	0	45	0.99
10809477--10809521	23	2.0	23	82	8	56	55	2	0	42	1.12
10809758--10809799	22	1.9	22	85	0	57	11	2	7	78	1.04
10809820--10809862	15	3.0	13	78	21	50	18	0	4	76	0.95
10811927--10811951	3	8.3	3	100	0	50	68	0	0	32	0.90
10812564--10812593	1	30.0	1	100	0	60	0	0	0	100	0.00
10815658--10815695	3	12.7	3	100	0	76	34	0	0	65	0.93
10816960--10817018	20	2.8	20	76	19	59	72	5	1	20	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10829195--10829360	49	3.4	48	76	6	156	36	7	16	39	1.77
10829195--10829371	98	1.8	98	83	4	241	35	9	16	38	1.81
10829529--10829623	47	2.0	46	86	6	129	38	13	12	34	1.83
10829797--10829836	15	2.7	15	88	0	62	0	20	0	80	0.72
10830770--10830827	19	3.1	18	79	13	64	22	0	3	74	0.97
10831072--10831131	20	2.8	22	73	14	54	70	3	3	23	1.18
10833529--10834445	463	2.0	464	96	0	1674	38	13	12	36	1.82
10836101--10836150	22	2.3	22	86	3	66	46	8	16	30	1.75
10836128--10836483	54	6.6	52	75	12	258	50	7	9	32	1.63
10836144--10836428	108	2.6	107	79	11	312	51	7	9	31	1.62
10836144--10836450	54	5.6	52	76	11	269	51	8	8	32	1.62
10836144--10836441	164	1.8	164	80	7	363	50	8	8	32	1.63
10838539--10838622	42	2.0	44	83	9	111	28	7	4	59	1.44
10838820--10838850	2	15.5	2	100	0	62	48	0	0	51	1.00
10839368--10839400	15	2.1	16	88	5	50	45	18	6	30	1.73
10845108--10845156	27	1.9	26	84	12	66	59	2	0	38	1.09
10845212--10845264	23	2.3	23	96	3	97	49	0	3	47	1.19
10845243--10845295	17	2.9	17	75	20	54	41	0	0	58	0.98
10845566--10845603	18	2.2	17	90	4	58	60	0	0	39	0.97
10845787--10845866	23	3.3	23	70	17	65	52	1	0	46	1.08
10846079--10846121	22	2.0	22	86	9	61	32	0	0	67	0.91
10852788--10852882	36	2.6	37	88	3	131	44	29	2	24	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10852920--10853021	53	2.0	52	84	7	136	41	29	2	26	1.70
10853000--10853051	19	2.8	18	75	16	52	48	26	1	23	1.62
10852918--10853046	52	2.5	53	80	9	140	41	30	2	25	1.68
10853105--10853168	18	3.6	17	76	12	58	26	10	7	54	1.62
10854270--10854336	14	4.7	14	68	20	50	34	5	0	59	1.22
10854259--10854313	25	2.2	25	90	0	92	34	9	0	56	1.31
10856432--10856468	2	18.0	2	88	5	56	45	5	0	48	1.25
10856826--10856903	40	1.9	41	84	2	104	33	10	11	44	1.74
10860033--10860151	62	1.9	62	83	6	152	36	15	8	40	1.77
10860289--10860358	35	2.0	35	94	0	122	40	12	12	34	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117