genome.fa.s90.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  25  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6817294--6817426	22	6.2	22	70	7	76	51	4	5	38	1.45
6818765--6818815	17	3.1	16	76	21	52	5	9	1	82	0.91
6819256--6819289	18	1.9	18	94	5	61	2	8	5	82	0.93
6819400--6819435	13	2.7	13	91	4	54	13	5	0	80	0.88
6819400--6819450	7	7.3	7	79	14	52	11	5	0	82	0.83
6819418--6819450	16	2.1	15	94	5	57	9	6	0	84	0.76
6819411--6819458	21	2.2	22	88	3	71	10	6	2	81	0.95
6819751--6819791	15	2.5	17	84	11	59	39	0	4	56	1.21
6819757--6819789	12	2.7	13	86	13	52	39	0	3	57	1.14
6820747--6820788	8	5.4	8	85	5	50	16	2	2	78	0.96
6820746--6820775	15	2.0	15	93	0	51	20	3	0	76	0.92
6829858--6829967	27	4.4	26	67	24	76	70	0	5	23	1.14
6829897--6829959	21	2.8	23	83	9	76	68	0	4	26	1.10
6829926--6829974	6	7.7	6	82	13	62	77	0	2	20	0.87
6837872--6837920	25	2.0	25	92	8	82	30	28	4	36	1.76
6840804--6840868	33	2.0	33	87	0	94	26	47	12	13	1.78
6843191--6843245	23	2.5	22	82	11	60	56	9	0	34	1.31
6842813--6843304	269	1.9	262	87	4	718	43	7	4	44	1.53
6845278--6845322	8	5.6	8	89	0	54	55	0	0	44	0.99
6845278--6845325	16	3.0	16	81	0	60	56	0	0	43	0.99
6845278--6845325	24	2.0	24	88	8	71	56	0	0	43	0.99
6845284--6845325	8	5.2	8	88	8	59	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6850091--6850139	25	2.0	25	92	8	82	36	4	28	30	1.76
6865086--6865128	23	1.9	23	85	4	61	25	2	2	69	1.12
6865086--6865135	23	2.2	22	82	3	55	26	2	2	70	1.09
6870345--6870412	3	22.7	3	100	0	136	66	0	0	33	0.92
6870578--6870721	78	1.8	78	86	2	209	48	15	11	24	1.78
6870578--6870727	40	3.8	40	82	5	180	48	14	12	24	1.78
6871767--6871818	14	3.9	14	80	5	63	9	15	1	73	1.18
6871795--6871849	12	4.2	12	74	17	56	1	12	1	83	0.80
6871802--6871848	10	4.9	9	76	23	51	2	10	2	85	0.78
6871787--6871848	28	2.2	28	85	5	81	3	12	1	82	0.87
6871795--6871849	28	2.0	28	89	7	85	1	12	1	83	0.80
6877001--6877080	41	1.9	42	87	7	119	28	18	13	38	1.89
6877783--6877921	73	1.9	71	84	10	183	34	6	5	53	1.51
6877941--6878015	3	26.7	3	70	17	54	74	0	2	22	0.94
6877935--6878007	6	12.5	6	80	11	64	75	0	2	21	0.93
6878793--6878968	3	57.7	3	73	21	111	67	1	2	28	1.13
6878798--6878914	25	4.6	25	79	13	116	64	0	3	31	1.16
6878817--6878971	53	2.9	52	81	10	156	67	1	2	27	1.14
6879096--6879668	44	13.5	44	75	11	416	43	17	12	25	1.85
6879096--6879668	84	6.7	86	75	11	341	43	17	12	25	1.85
6879267--6879693	41	10.3	40	73	11	190	44	17	11	26	1.83
6879099--6879688	126	4.7	125	76	10	470	43	17	12	25	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6891006--6891031	13	2.0	13	100	0	52	84	0	0	15	0.62
6891096--6891299	60	3.4	57	82	8	239	35	9	7	47	1.64
6891280--6891320	21	2.0	21	95	0	73	34	14	4	46	1.66
6891480--6891541	6	10.3	6	75	13	56	75	0	4	19	0.97
6891483--6891557	12	6.2	12	76	14	57	73	1	4	21	1.07
6891478--6891549	23	3.4	20	70	23	58	75	0	4	20	0.97
6891999--6892030	11	2.9	11	90	0	55	43	9	9	37	1.69
6892325--6892448	27	4.7	26	72	16	96	68	2	2	26	1.14
6892370--6892447	3	25.7	3	78	12	79	69	1	1	28	1.04
6894442--6894513	26	2.8	26	77	12	76	77	8	0	13	0.98
6894442--6894500	31	1.9	30	89	3	91	77	6	0	15	0.96
6896036--6896103	13	4.9	13	75	10	64	26	1	1	70	1.04
6896026--6896106	26	3.4	24	83	9	103	29	1	1	67	1.06
6897851--6897920	24	2.6	26	69	17	63	55	0	1	42	1.08
6900232--6900272	21	1.9	22	90	10	59	19	7	4	68	1.32
6900619--6900661	22	1.9	22	85	4	59	60	2	2	34	1.22
6900631--6900674	22	2.0	22	82	8	54	59	2	4	34	1.30
6902246--6902279	2	17.0	2	93	0	59	52	0	0	47	1.00
6902593--6902669	29	2.6	29	81	4	91	45	1	3	49	1.28
6902608--6902684	29	2.5	31	85	10	104	42	1	3	51	1.28
6906554--6906585	12	2.7	12	100	0	64	25	25	15	34	1.95
6906993--6907037	3	14.7	3	86	4	63	33	2	2	62	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6907103--6907281	60	3.0	60	90	1	281	46	5	9	39	1.58
6907266--6907317	23	2.2	24	82	3	61	36	5	9	48	1.60
6909220--6909267	25	1.9	25	82	0	60	66	0	2	31	1.03
6909686--6909738	22	2.3	23	80	6	72	47	0	5	47	1.26
6910623--6910653	2	15.5	2	100	0	62	0	48	0	51	1.00
6917847--6918216	186	2.0	186	95	1	670	27	19	14	38	1.91
6918985--6919017	2	16.5	2	100	0	66	48	0	0	51	1.00
6927500--6927620	36	3.4	35	77	8	111	24	27	12	35	1.91
6927537--6927630	36	2.6	36	84	3	109	23	27	12	36	1.91
6933264--6933327	21	3.0	21	77	6	58	32	18	0	48	1.49
6936739--6936781	22	1.9	23	90	4	70	58	0	0	41	0.98
6936739--6936781	23	1.9	22	86	13	61	58	0	0	41	0.98
6941068--6941092	3	8.3	3	100	0	50	32	0	0	68	0.90
6941334--6941399	17	3.9	16	77	16	55	51	4	0	43	1.22
6941759--6941847	6	15.2	6	82	12	96	28	1	5	65	1.22
6941764--6941835	29	2.5	29	93	0	126	27	0	5	66	1.13
6941769--6941847	17	4.6	17	82	7	90	26	0	6	67	1.15
6947475--6947523	16	3.1	16	80	11	57	46	4	10	38	1.57
6952143--6952174	17	1.9	17	93	6	57	18	0	6	75	1.01
6952160--6952217	29	2.0	29	83	6	73	20	0	10	68	1.18
6952356--6952442	18	4.6	20	75	22	89	26	6	12	54	1.63
6952466--6952494	14	2.1	14	93	6	51	20	6	17	55	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6952540--6952610	29	2.5	27	76	17	65	25	5	16	52	1.66
6953130--6953175	23	2.0	22	83	8	56	50	0	0	50	1.00
6953140--6953182	22	1.9	23	85	4	61	41	2	2	53	1.26
6953499--6953546	17	2.5	20	83	9	66	27	2	2	68	1.11
6959199--6959362	82	2.0	82	91	0	265	32	11	9	45	1.73
6962909--6962952	23	2.0	23	82	13	56	29	2	0	68	1.02
6963962--6964008	22	2.2	21	84	3	58	27	2	2	68	1.13
6963985--6964051	35	1.9	35	87	6	100	37	2	0	59	1.13
6969797--6969846	16	3.2	16	75	18	52	50	2	0	48	1.12
6971595--6971631	2	20.0	2	84	15	53	51	0	0	48	1.00
6971593--6971631	21	1.9	19	90	10	60	51	0	0	48	1.00
6971817--6971884	30	2.3	30	82	2	84	51	4	5	38	1.46
6972354--6972409	22	2.5	23	77	8	62	48	0	0	51	1.00
6974008--6974076	30	2.4	27	80	13	84	10	14	30	44	1.78
6974017--6974107	30	3.0	30	86	0	119	14	15	31	38	1.87
6978499--6978574	29	2.4	32	74	17	77	69	13	7	9	1.35
6978608--6978643	3	12.0	3	93	0	63	36	0	0	63	0.94
6982389--6982558	36	4.7	37	73	9	127	49	9	15	25	1.75
6982372--6982508	73	1.9	73	82	8	172	50	8	14	27	1.71
6982952--6983122	93	1.8	93	89	2	272	38	12	16	32	1.86
6986432--6986459	2	14.0	2	100	0	56	50	0	0	50	1.00
6991481--6991512	10	3.2	10	90	0	55	25	0	0	75	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6991545--6991583	10	3.8	10	86	3	51	48	0	0	51	1.00
6991543--6991583	20	2.0	21	90	4	66	48	0	0	51	1.00
6991542--6991596	11	5.0	12	80	14	57	50	1	0	47	1.11
6991635--6991704	31	2.3	30	92	4	122	44	2	0	52	1.15
6992192--6992229	19	2.0	19	85	10	51	34	2	2	60	1.24
6993832--6993890	29	2.0	30	86	3	84	49	1	1	47	1.21
6993689--6994092	198	2.0	199	95	0	738	35	9	12	42	1.75
6994176--6994242	15	4.5	16	74	20	56	58	0	0	41	0.98
6994174--6994262	31	3.2	27	71	21	67	56	0	0	43	0.99
6994197--6994263	29	2.2	30	82	10	75	58	0	0	41	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117