genome.fa.s90.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  3  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
507695--507728	9	3.8	9	88	0	50	50	26	2	20	1.63
509630--509664	6	5.8	6	89	0	52	11	14	22	51	1.74
514876--514940	24	2.8	24	75	11	62	60	0	6	33	1.22
514886--514916	16	1.9	16	93	0	53	74	0	0	25	0.82
514906--514962	22	2.5	21	81	13	60	57	0	10	31	1.32
522855--522881	14	1.9	14	100	0	54	40	0	22	37	1.54
527568--527618	2	25.5	2	100	0	102	49	0	0	50	1.00
529328--529357	14	2.1	14	93	0	51	26	6	13	53	1.64
529745--529799	28	2.0	28	82	7	67	49	5	1	43	1.36
530396--530442	13	3.6	13	85	0	58	68	4	2	25	1.19
530487--530550	29	2.2	28	82	15	78	53	3	0	43	1.16
530493--530564	31	2.3	30	79	11	83	50	2	0	47	1.15
537169--537266	47	2.1	47	98	0	187	22	13	22	41	1.88
542183--542408	117	1.9	117	91	1	373	34	11	5	48	1.62
544042--544097	24	2.3	24	100	0	112	32	3	19	44	1.68
552048--552119	36	2.0	35	89	7	110	34	11	6	47	1.66
558827--558929	52	2.0	52	88	3	154	37	2	32	27	1.72
561865--561921	26	2.2	26	90	3	89	28	14	14	43	1.83
564974--565209	120	2.0	120	97	0	445	32	22	19	25	1.98
567860--567918	30	2.0	30	93	0	100	35	10	11	42	1.76
568851--568875	2	12.5	2	100	0	50	48	0	0	52	1.00
571627--571683	26	2.2	25	84	6	78	26	14	15	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
594228--594272	23	1.9	24	82	13	58	46	11	8	33	1.70
598577--598607	2	15.5	2	100	0	62	0	51	0	48	1.00
602129--602211	42	2.0	42	85	4	114	36	15	20	27	1.93
622034--622077	3	14.7	3	100	0	88	0	31	0	68	0.90
622351--622598	137	1.8	136	96	0	460	45	15	12	25	1.82
624830--624877	22	2.2	23	81	11	64	47	16	8	27	1.75
624838--624885	22	2.2	21	85	7	69	50	14	10	25	1.74
628924--629573	326	2.0	326	99	0	1282	36	16	18	28	1.92
634334--634372	17	2.3	17	86	8	53	28	5	0	66	1.12
637829--637862	15	2.3	15	90	5	52	47	0	0	52	1.00
642962--642996	18	1.9	18	88	0	52	45	0	48	5	1.26
647911--647963	17	3.0	17	73	10	52	47	0	3	49	1.19
648016--648045	15	2.0	15	93	0	51	26	16	30	26	1.97
656009--656063	29	1.9	28	85	3	74	32	10	14	41	1.81
667872--667912	2	20.5	2	89	0	64	46	0	4	48	1.23
672016--672042	4	6.8	4	100	0	54	25	48	0	25	1.52
674177--674251	37	2.0	37	89	0	114	54	14	0	30	1.41
676506--676581	39	2.0	38	87	7	109	43	14	17	25	1.86
682640--682684	14	3.1	14	80	3	54	28	0	2	68	1.01
682667--682705	13	3.0	13	84	0	60	43	0	0	56	0.99
690845--690906	31	2.0	31	96	0	115	25	8	22	43	1.80
694668--695159	252	1.9	255	86	2	706	35	13	12	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
710475--710505	16	1.9	16	93	0	53	0	22	3	74	0.96
719174--719214	20	2.0	20	85	9	55	31	0	4	63	1.15
725175--725231	17	3.5	16	78	9	53	49	5	3	42	1.42
725175--725238	32	2.0	33	87	3	94	46	6	3	43	1.44
725188--725239	17	3.2	17	74	17	56	44	7	3	44	1.51
725664--725711	22	2.1	24	85	14	66	47	0	0	52	1.00
725658--725730	21	3.1	22	73	23	60	46	0	0	53	1.00
725858--725909	24	2.2	23	83	10	61	55	0	3	40	1.18
734330--734405	37	2.1	37	97	0	143	30	15	11	42	1.83
742851--742895	17	2.6	17	86	10	65	68	0	0	31	0.89
742858--742902	23	2.1	21	88	12	65	68	0	0	31	0.89
744222--744261	2	20.0	2	100	0	80	50	0	0	50	1.00
748344--748535	94	2.0	94	100	0	384	25	13	15	45	1.82
748514--748564	25	2.0	25	100	0	102	19	33	0	47	1.50
748689--748732	2	22.0	2	80	0	52	50	9	0	40	1.34
749644--749678	1	35.0	1	94	0	61	97	0	2	0	0.19
756271--756311	20	2.0	20	85	0	55	31	4	0	63	1.15
760122--760165	22	2.0	23	90	4	72	25	9	18	47	1.77
765724--765843	65	1.9	64	84	5	154	39	13	1	45	1.53
765761--765790	15	1.9	16	93	6	53	53	0	3	43	1.17
766378--766414	20	1.9	20	88	5	58	43	10	10	35	1.75
766890--766922	15	2.1	16	88	5	50	57	6	6	30	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
766903--766945	23	1.9	22	90	4	68	69	2	4	23	1.18
769623--769704	42	2.0	42	92	4	139	35	14	9	40	1.79
771064--771173	54	2.0	54	96	0	202	33	10	13	42	1.78
781791--781818	5	5.6	5	100	0	56	82	0	0	17	0.68
787703--787736	17	2.1	17	89	10	54	0	11	5	82	0.83
797787--797826	20	2.0	20	85	0	53	37	2	5	55	1.35
805212--805244	17	1.9	17	88	11	50	87	0	3	9	0.63
809854--809909	28	2.0	28	96	0	103	19	21	19	39	1.93
811201--811247	15	3.1	15	84	0	58	6	48	0	44	1.28
811210--811252	15	2.9	15	82	0	50	6	48	0	44	1.29
822790--822822	17	1.9	17	93	0	57	24	27	6	42	1.78
832954--833206	122	2.1	122	85	4	332	37	14	11	35	1.83
834756--834795	3	13.3	3	100	0	80	32	32	0	35	1.58
837777--837817	17	2.4	18	88	8	59	41	17	26	14	1.88
837784--837817	18	1.9	17	94	5	59	35	14	32	17	1.91
839873--839900	2	14.0	2	100	0	56	50	0	0	50	1.00
840039--840066	2	14.0	2	100	0	56	50	0	0	50	1.00
840235--840284	24	2.1	24	96	0	91	26	12	18	44	1.84
840424--840463	2	20.0	2	100	0	80	50	0	0	50	1.00
840259--840652	200	2.0	197	94	2	691	34	8	15	41	1.78
840627--840652	2	13.0	2	100	0	52	50	0	0	50	1.00
843617--843725	34	3.2	34	78	0	110	40	10	8	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
844752--844897	72	2.0	72	95	0	265	27	15	15	41	1.87
847003--847062	26	2.3	26	97	0	111	33	46	6	13	1.69
850344--850378	3	11.7	3	100	0	70	31	0	0	68	0.90
852871--852906	3	12.0	3	100	0	72	66	0	0	33	0.92
856889--856981	35	2.7	34	80	11	109	43	7	9	39	1.66
856881--856996	34	3.4	34	77	8	110	43	6	7	42	1.60
858411--858493	41	2.0	41	88	0	121	39	12	3	44	1.59
858807--858965	78	2.0	78	95	0	282	11	12	18	57	1.64
859506--859566	30	2.0	30	83	0	77	44	0	1	54	1.10
862657--862701	22	2.1	21	83	4	54	8	4	13	73	1.23
864981--865253	141	1.9	141	83	2	352	21	21	15	41	1.90
866015--866096	41	2.0	41	90	0	128	41	21	3	32	1.71
874342--874376	4	8.8	4	100	0	70	51	22	0	25	1.48
875563--875596	11	3.1	11	86	0	50	88	2	8	0	0.62
876307--876336	14	2.1	14	93	0	51	13	20	36	30	1.90
880250--880298	23	2.2	23	85	10	66	30	10	14	44	1.78
883448--883496	14	2.8	18	72	27	52	65	6	2	26	1.27
889709--889863	80	1.9	80	93	0	265	21	18	30	29	1.97
889544--889981	193	2.3	192	89	2	673	22	18	30	28	1.97
889790--890015	112	2.0	112	90	1	355	23	19	30	26	1.98
896911--896952	17	2.6	16	79	17	50	61	7	2	28	1.35
897267--897304	14	2.5	15	83	12	51	39	2	10	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
897922--898003	38	2.2	37	82	12	96	46	4	2	46	1.37
897951--897993	17	2.7	16	86	10	61	48	2	2	46	1.27
898157--898206	26	2.0	25	92	4	82	54	2	0	44	1.11
898859--898938	10	7.5	10	72	17	54	46	5	2	46	1.38
900371--900399	14	2.0	15	93	6	51	55	0	0	44	0.99
908184--908262	39	2.0	39	85	4	106	31	29	21	17	1.96
909609--909642	17	2.0	17	88	0	50	67	0	2	29	1.05
923124--923190	34	2.0	33	85	8	91	61	5	1	31	1.29
927303--927335	13	2.6	13	90	4	50	78	0	0	21	0.75
927394--927428	13	2.8	13	91	4	54	25	11	0	62	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117