genome.fa.s90.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  53  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12024256--12024304	24	2.0	25	84	4	64	46	2	0	51	1.12
12024608--12024638	12	2.6	12	94	0	53	29	0	0	70	0.87
12025499--12025537	16	2.5	16	84	15	55	17	2	0	79	0.84
12031372--12031396	13	1.9	13	100	0	50	76	0	0	24	0.80
12037605--12037655	23	2.2	23	86	6	68	1	15	0	82	0.76
12038140--12038273	7	19.6	7	69	15	84	18	1	35	44	1.59
12038170--12038273	27	3.8	26	74	13	95	19	1	34	44	1.62
12039178--12039227	22	2.4	22	83	6	59	56	8	0	36	1.29
12039303--12039363	30	2.0	31	83	3	79	42	1	3	52	1.27
12039305--12039413	42	2.7	41	75	6	107	38	2	2	55	1.28
12039393--12039474	9	9.1	9	70	10	51	35	2	3	58	1.29
12039383--12039470	27	3.2	28	73	10	85	34	2	3	60	1.26
12040820--12040859	20	2.0	20	90	0	62	35	7	12	45	1.70
12041093--12041223	48	2.7	49	80	5	124	48	14	9	27	1.75
12041291--12041315	2	12.5	2	100	0	50	0	48	0	52	1.00
12041693--12041775	24	3.5	24	80	9	98	40	27	13	18	1.87
12041832--12041879	23	2.0	23	84	4	60	54	18	6	20	1.65
12044166--12044236	9	7.6	9	72	9	61	8	11	1	78	1.01
12044198--12044250	15	3.2	16	84	13	63	5	16	0	77	0.96
12051025--12051096	36	2.0	36	86	0	99	38	11	15	34	1.83
12052321--12052354	8	4.1	8	92	7	59	14	0	2	82	0.79
12052321--12052354	17	2.1	16	94	5	59	14	0	2	82	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12057316--12057361	6	7.5	6	88	11	67	0	17	0	82	0.67
12057315--12057370	18	3.2	18	82	12	71	1	16	0	82	0.76
12057802--12057866	18	3.5	19	72	8	62	18	1	33	46	1.59
12060442--12060491	15	3.3	15	77	2	55	30	6	6	58	1.46
12066055--12066081	2	13.5	2	100	0	54	51	0	0	48	1.00
12066081--12066121	21	2.0	20	85	4	55	73	0	14	12	1.11
12069445--12069526	36	2.3	36	85	4	112	36	17	19	26	1.94
12072937--12072992	21	2.6	23	83	8	73	32	0	1	66	1.03
12072937--12072992	22	2.6	21	78	13	53	32	0	1	66	1.03
12076449--12076484	2	18.5	2	94	5	65	50	0	0	50	1.00
12083745--12083778	2	17.5	2	87	6	52	47	0	2	50	1.16
12084846--12084879	17	1.9	17	88	5	50	67	0	5	26	1.13
12086720--12086747	2	14.0	2	100	0	56	50	0	0	50	1.00
12087745--12087787	5	9.0	5	80	10	54	76	4	0	18	0.95
12088591--12088633	3	14.7	3	81	13	54	72	0	0	27	0.85
12088959--12089238	147	1.9	147	82	1	346	45	13	20	20	1.84
12089127--12089713	119	4.9	120	81	5	543	45	14	20	18	1.84
12100891--12100920	15	2.1	14	93	6	51	83	0	0	16	0.65
12100891--12100920	7	4.1	7	91	8	51	83	0	0	16	0.65
12101127--12101226	51	2.0	51	82	7	123	46	23	8	23	1.78
12101133--12101238	51	2.1	50	81	8	117	48	20	9	21	1.78
12101391--12101433	20	2.1	20	82	4	50	34	32	4	27	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12101761--12101827	23	3.1	21	81	10	82	74	0	0	25	0.82
12101763--12101830	3	24.7	3	80	16	85	73	0	0	26	0.83
12101763--12101830	14	4.9	14	80	7	77	73	0	0	26	0.83
12101763--12101832	20	3.7	20	83	14	94	74	0	0	25	0.82
12112331--12112519	99	1.9	98	87	1	279	28	19	23	29	1.98
12119408--12119457	24	2.1	24	85	7	66	58	4	16	22	1.55
12120742--12120842	33	3.1	33	98	0	193	32	17	17	31	1.94
12123721--12123763	22	2.0	22	90	0	68	41	11	13	32	1.81
12125312--12125340	3	9.7	3	100	0	58	34	0	0	65	0.93
12130713--12130765	8	6.8	8	89	2	81	60	0	0	39	0.97
12135899--12135928	3	10.0	3	100	0	60	33	0	0	66	0.92
12139116--12139208	40	2.4	39	85	5	116	40	16	9	33	1.81
12146259--12146316	28	2.1	28	93	0	98	37	12	5	44	1.64
12147795--12147858	27	2.3	27	81	2	74	48	4	0	46	1.23
12148681--12148710	2	15.0	2	100	0	60	50	0	50	0	1.00
12156683--12156709	3	9.0	3	100	0	54	66	0	0	33	0.92
12157006--12157032	7	3.9	7	100	0	54	55	0	0	44	0.99
12157146--12157178	15	2.1	16	94	5	59	42	15	0	42	1.46
12164696--12164757	30	2.1	30	84	0	79	17	3	35	43	1.66
12164763--12164811	22	2.3	20	80	19	55	22	0	26	51	1.49
12165170--12165208	3	12.7	3	89	5	60	33	0	2	64	1.08
12166300--12166376	3	26.3	3	74	10	61	37	0	1	61	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12166654--12167664	171	5.9	170	86	2	1246	45	11	19	22	1.82
12167263--12167333	34	2.1	34	83	0	88	46	7	23	22	1.76
12166654--12167671	513	2.0	513	88	2	1499	46	11	19	22	1.82
12167697--12168092	109	3.6	107	81	2	382	39	16	18	25	1.91
12167694--12168092	218	1.8	216	82	4	516	39	16	19	25	1.91
12176776--12176835	29	2.0	30	84	9	79	18	0	33	48	1.48
12177259--12177288	3	9.7	3	92	7	51	33	0	0	66	0.92
12187057--12187139	42	2.0	42	97	2	159	33	15	16	33	1.91
12191070--12191105	4	8.5	4	88	11	54	22	2	0	75	0.94
12191506--12191535	10	3.1	10	95	4	53	20	0	20	60	1.37
12195834--12195859	11	2.4	11	100	0	52	92	0	7	0	0.39
12195728--12195881	59	2.7	55	80	14	168	58	9	14	17	1.62
12196761--12196824	22	3.0	21	70	26	55	34	0	20	45	1.51
12197059--12197154	17	5.6	17	73	2	57	34	13	10	41	1.79
12197425--12197479	18	3.1	18	68	5	58	36	16	9	38	1.80
12197425--12197529	35	3.0	35	78	2	102	41	14	7	36	1.74
12197471--12197527	18	3.2	18	75	9	62	49	12	5	33	1.63
12197950--12198032	6	13.7	6	79	2	76	22	0	12	65	1.26
12197952--12198032	12	6.7	12	79	8	92	20	0	12	66	1.24
12197952--12198032	24	3.3	24	86	3	117	20	0	12	66	1.24
12199163--12199200	20	1.9	20	84	10	51	23	0	5	71	1.07
12199216--12199296	21	4.1	19	77	13	74	38	4	7	49	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12199252--12199300	20	2.5	21	72	24	52	36	4	6	53	1.45
12202313--12202362	3	16.3	3	91	4	82	32	32	0	36	1.58
12202372--12202409	15	2.5	15	86	0	58	15	2	2	78	0.97
12203489--12203688	58	3.5	55	79	14	187	52	5	9	33	1.56
12203454--12203878	57	7.7	55	75	14	285	50	5	9	34	1.58
12203648--12203905	106	2.4	109	81	9	296	48	5	10	36	1.60
12203652--12203975	58	5.8	56	74	11	194	49	5	9	35	1.58
12209045--12209081	11	3.4	11	92	7	58	91	0	8	0	0.41
12210105--12210382	37	7.9	37	76	13	230	32	19	11	37	1.87
12210255--12210350	32	3.0	32	79	8	106	32	18	11	37	1.87
12210690--12210823	33	4.1	32	78	11	132	28	20	8	42	1.82
12210690--12210823	65	2.1	65	82	10	159	28	20	8	42	1.82
12212277--12212761	57	8.6	56	81	10	410	49	5	9	36	1.58
12212424--12212737	110	2.9	105	79	11	246	48	4	10	36	1.58
12213941--12214028	18	4.8	18	70	9	70	40	39	3	15	1.64
12213932--12214033	12	8.1	13	69	20	58	43	38	2	15	1.62
12215344--12215399	23	2.3	25	84	6	71	64	3	1	30	1.21
12216211--12216287	31	2.5	30	77	6	75	32	3	3	59	1.34
12217046--12217556	253	2.0	253	99	0	1013	43	12	4	39	1.63
12219137--12219181	22	2.0	23	86	4	65	11	11	0	77	0.99
12220088--12220413	126	2.6	125	81	4	352	35	14	12	37	1.84
12220290--12220351	22	2.8	22	80	0	79	38	20	11	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12220613--12220727	22	5.1	22	74	1	104	28	16	20	33	1.95
12220613--12220694	23	3.6	23	80	3	85	29	15	20	34	1.94
12220675--12220760	45	1.9	44	81	6	102	27	17	22	32	1.96
12221340--12221401	26	2.4	26	86	0	88	30	16	17	35	1.92
12228010--12228035	3	8.7	3	100	0	52	30	0	0	69	0.89
12228536--12228597	31	2.0	31	100	0	124	32	22	6	38	1.80
12229191--12229229	21	2.0	21	85	14	57	53	2	0	43	1.14
12232972--12233015	1	44.0	1	95	0	79	0	97	0	2	0.16
12233810--12233841	2	17.0	2	87	12	50	46	0	0	53	1.00
12235417--12235470	17	3.0	17	78	21	65	42	0	0	57	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117