genome.fa.s90.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  58  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12997800--12997919	36	3.3	35	81	9	109	20	22	8	49	1.75
12998200--12998240	18	2.3	18	87	4	57	82	4	4	7	0.93
13000930--13000969	21	2.0	21	85	5	55	25	22	17	35	1.95
13000911--13001072	51	3.2	50	77	6	150	31	20	15	32	1.94
13002224--13002383	63	2.5	63	77	7	171	41	8	8	41	1.65
13002404--13002537	64	2.1	63	83	6	164	37	7	8	47	1.62
13002296--13002654	155	2.3	154	87	1	495	36	6	10	45	1.65
13002559--13002679	63	1.9	63	88	9	185	39	8	7	44	1.62
13004682--13004759	34	2.3	34	84	0	93	17	1	25	55	1.50
13004778--13005035	131	2.0	131	96	1	473	30	13	10	46	1.76
13005108--13005182	13	5.5	13	76	9	60	48	22	4	25	1.68
13005109--13005150	15	2.9	15	82	3	50	42	19	4	33	1.72
13005178--13005265	13	6.7	13	70	16	65	46	37	1	14	1.52
13005185--13005265	7	12.3	7	73	15	66	46	38	1	13	1.51
13006595--13006666	37	2.0	37	94	2	128	31	5	11	51	1.60
13006584--13006684	21	5.0	21	73	18	81	32	4	9	52	1.56
13006683--13006759	37	2.1	38	90	2	120	27	2	14	55	1.52
13006693--13006753	17	3.4	17	68	12	50	26	3	18	52	1.60
13007115--13007191	37	2.1	37	90	4	120	36	11	19	32	1.88
13009985--13010115	21	6.2	21	75	3	84	39	3	22	33	1.72
13009985--13010164	84	2.1	84	86	0	243	38	5	21	35	1.75
13009985--13010115	42	3.1	42	75	4	138	39	3	22	33	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13010064--13010122	21	2.8	21	89	0	91	42	5	22	30	1.75
13010106--13010199	36	2.4	40	79	17	124	32	7	20	39	1.80
13010124--13010199	36	2.1	36	92	0	125	31	7	21	39	1.82
13011193--13011226	15	2.3	15	89	0	50	79	0	11	8	0.94
13012415--13012565	48	3.2	47	85	3	196	32	9	15	41	1.81
13012606--13012758	42	3.8	41	71	14	138	30	11	21	36	1.88
13012597--13012720	37	3.2	36	73	13	113	29	10	20	40	1.85
13013017--13013083	7	9.9	7	77	8	50	26	4	4	64	1.32
13013062--13013092	12	2.6	12	94	0	53	22	0	6	70	1.09
13013403--13013436	18	1.9	18	88	5	52	55	23	8	11	1.63
13014389--13014451	20	3.0	22	77	17	64	31	4	11	52	1.58
13014403--13014537	20	6.9	19	69	18	82	34	5	9	50	1.57
13014400--13014526	40	3.2	39	77	15	136	34	5	10	49	1.60
13014538--13014582	19	2.5	17	83	13	63	26	6	20	46	1.75
13014543--13014579	19	1.9	19	94	0	65	29	8	18	43	1.79
13015354--13015399	24	1.9	24	90	0	74	58	17	0	23	1.38
13016544--13016613	20	3.5	19	79	15	70	70	1	5	22	1.17
13017150--13017183	10	3.3	10	87	4	50	64	0	2	32	1.08
13024033--13024095	23	2.7	24	78	14	69	53	1	1	42	1.19
13024150--13024189	17	2.4	16	80	12	53	67	0	32	0	0.91
13024155--13024190	18	2.0	18	94	0	63	63	0	36	0	0.94
13024428--13024488	22	2.8	21	75	20	63	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13024447--13024484	12	3.2	13	89	10	55	65	0	0	34	0.93
13025123--13025171	25	2.0	25	88	8	73	28	4	0	67	1.09
13026928--13027009	43	1.9	43	89	0	128	25	45	4	24	1.73
13027713--13027753	2	20.5	2	100	0	82	51	0	48	0	1.00
13027921--13027973	22	2.4	23	87	6	74	20	7	0	71	1.10
13028096--13028144	21	2.2	24	85	10	68	24	2	0	73	0.94
13027818--13028164	173	2.0	173	94	3	619	24	23	4	46	1.72
13028683--13028718	19	1.9	18	94	5	63	63	0	0	36	0.94
13028683--13028722	9	4.1	10	87	12	57	62	0	0	37	0.95
13028709--13028761	26	2.1	26	82	10	65	47	0	0	52	1.00
13045286--13045320	16	2.3	15	90	5	52	22	0	5	71	1.07
13052190--13052241	24	2.2	23	83	13	61	26	1	7	63	1.32
13052406--13052452	15	2.8	17	78	15	53	57	2	8	31	1.41
13053042--13053070	14	2.1	14	100	0	58	34	6	6	51	1.55
13056727--13056902	71	2.5	69	73	11	176	28	13	17	40	1.88
13057637--13057688	22	2.4	22	86	0	68	36	26	9	26	1.87
13057755--13057822	32	2.1	32	88	0	100	16	16	13	54	1.71
13057809--13057861	26	2.0	26	82	7	63	18	24	7	49	1.74
13057836--13057912	32	2.4	32	84	0	91	16	23	10	49	1.77
13057948--13058036	33	2.7	33	92	0	142	23	19	8	48	1.77
13058169--13058264	33	2.9	32	79	3	102	22	12	10	54	1.68
13058670--13058748	24	3.3	23	74	8	70	18	3	2	74	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13058719--13058767	22	2.1	23	85	11	64	18	2	2	77	0.96
13060668--13060706	4	9.0	4	84	15	51	25	2	0	71	0.98
13060960--13060993	15	2.3	15	85	5	52	64	0	2	32	1.08
13067313--13067339	2	13.5	2	100	0	54	51	0	0	48	1.00
13067917--13067946	15	2.0	15	93	0	51	93	0	3	3	0.42
13068639--13070090	357	4.1	356	86	2	1936	35	16	12	35	1.87
13068668--13070090	710	2.0	713	86	1	2016	35	16	12	35	1.87
13079005--13079060	22	2.7	21	86	10	80	66	0	1	32	1.03
13081738--13081881	20	6.5	22	66	21	59	52	0	1	46	1.09
13081763--13081809	26	1.9	26	83	12	64	65	0	2	31	1.04
13081846--13081917	2	37.5	2	73	13	53	50	0	1	48	1.09
13081841--13081923	20	4.3	19	73	14	73	48	0	2	49	1.14
13085183--13085237	22	2.6	21	85	11	76	34	3	1	60	1.25
13091463--13091492	15	2.0	15	93	0	51	73	3	0	23	0.98
13096739--13096794	25	2.3	23	81	9	58	32	8	3	55	1.48
13097232--13097368	7	20.9	7	69	12	67	19	2	34	43	1.66
13097214--13097309	39	2.4	38	75	13	95	19	3	35	41	1.68
13097217--13097309	20	4.8	20	77	9	84	19	3	34	43	1.67
13097232--13097324	33	2.8	31	78	13	98	21	3	33	41	1.69
13097273--13097325	20	2.7	20	87	0	61	24	5	30	39	1.78
13097334--13097368	12	2.8	13	86	8	54	11	0	37	51	1.38
13099277--13099325	20	2.5	20	80	16	57	26	8	18	46	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13099816--13100044	42	5.6	42	73	9	150	37	13	19	30	1.89
13099985--13100387	42	9.7	42	73	7	202	37	12	19	30	1.88
13100259--13100355	41	2.4	41	85	1	133	41	17	16	24	1.89
13100276--13100390	40	2.8	41	80	7	137	40	15	17	26	1.90
13100588--13100649	17	3.6	17	76	8	72	48	24	8	19	1.75
13100638--13100751	53	2.1	54	85	4	151	41	6	20	32	1.77
13100706--13100764	17	3.3	17	69	28	50	40	6	16	35	1.76
13100695--13100831	71	1.9	71	82	8	172	40	5	17	35	1.74
13100691--13100853	71	2.3	71	80	6	161	42	5	19	32	1.74
13102615--13102648	15	2.3	15	90	5	52	47	14	0	38	1.45
13103736--13103800	25	2.6	23	81	15	76	9	4	6	80	1.03
13104201--13104680	51	9.5	50	78	10	363	38	17	12	30	1.88
13109325--13109367	11	3.5	11	77	22	50	23	0	0	76	0.78
13111297--13111349	3	17.7	3	100	0	106	66	0	0	33	0.92
13112016--13112063	24	2.0	25	84	12	64	35	2	12	50	1.52
13112080--13112135	28	2.0	28	100	0	112	35	10	7	46	1.66
13112781--13112819	18	2.2	18	86	9	53	48	15	12	23	1.79
13112879--13112929	18	2.8	19	73	5	52	47	11	13	27	1.78
13118749--13118818	34	2.1	34	94	0	122	27	14	20	38	1.91
13118799--13118914	56	2.1	56	91	0	187	23	15	21	39	1.91
13120064--13120100	17	2.2	17	90	9	58	5	10	0	83	0.79
13124563--13124634	21	3.6	20	76	10	58	77	5	1	15	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13125549--13125662	6	19.5	6	77	5	99	65	6	3	24	1.31
13125632--13125674	22	1.9	23	85	4	61	67	16	0	16	1.24
13126800--13127039	120	2.0	120	96	0	444	42	13	18	25	1.87
13127169--13127203	10	3.6	10	92	7	63	71	0	11	17	1.14
13127171--13127202	9	3.4	9	95	4	55	71	0	9	18	1.12
13127155--13127205	19	2.7	19	80	19	63	72	0	13	13	1.12
13127709--13127970	48	5.4	48	74	10	203	37	12	11	38	1.80
13127704--13127969	97	2.8	92	81	10	300	37	12	11	38	1.80
13127704--13127977	49	5.7	48	76	9	220	36	13	10	38	1.80
13130470--13130636	19	9.1	19	71	16	86	45	38	2	13	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117