genome.fa.s90.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  86  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16824484--16824536	26	2.0	26	92	0	88	28	24	18	28	1.98
16824617--16824649	11	3.0	11	95	0	57	18	33	36	12	1.88
16821812--16825259	902	3.8	897	86	3	4591	26	24	24	25	2.00
16826995--16827047	26	2.0	26	96	0	97	28	26	18	26	1.98
16825384--16830360	891	5.6	889	85	4	6393	26	25	23	25	2.00
16827865--16827914	26	1.9	26	83	0	64	24	26	18	32	1.97
16828776--16828828	26	2.0	26	92	0	88	28	24	18	28	1.98
16829679--16829731	26	2.0	26	100	0	106	26	26	20	26	1.99
16829916--16830798	438	2.0	439	92	0	1453	32	23	16	27	1.96
16831878--16831930	26	2.0	26	96	0	97	26	24	20	28	1.99
16833665--16833717	26	2.0	26	88	0	79	30	24	16	28	1.97
16830355--16834101	894	4.2	888	85	4	4973	26	24	23	25	2.00
16834951--16835003	26	2.0	26	92	0	88	30	26	15	28	1.96
16835843--16835895	26	2.0	26	100	0	106	30	26	16	26	1.97
16834098--16857465	901	26.0	903	81	6	23769	25	25	24	25	2.00
16836745--16836797	26	2.0	26	92	0	88	30	26	16	26	1.97
16838539--16838589	26	2.0	25	92	3	84	27	25	19	27	1.99
16840295--16840347	26	2.0	26	96	0	97	26	28	18	26	1.98
16842073--16842122	25	2.0	26	92	4	84	30	26	18	26	1.98
16845639--16845691	26	2.0	26	92	0	88	26	26	22	24	2.00
16846535--16846587	26	2.0	26	96	0	97	26	24	20	28	1.99
16847422--16847473	26	2.0	26	96	0	95	28	26	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16848433--16848485	26	2.0	26	88	0	79	28	22	18	30	1.98
16848458--16848693	117	2.0	117	84	1	303	19	25	30	25	1.98
16849446--16849498	26	2.0	26	96	0	97	28	24	20	26	1.99
16850336--16850388	26	2.0	26	96	0	97	28	26	18	26	1.98
16848576--16857467	873	10.0	873	84	5	10502	25	24	24	25	2.00
16853873--16853925	26	2.0	26	92	0	88	30	24	18	26	1.98
16852123--16857465	896	6.0	897	84	5	6594	25	24	24	25	2.00
16855665--16855717	26	2.0	26	92	0	88	24	28	20	26	1.99
16857260--16857624	160	2.3	158	82	4	432	20	27	29	23	1.98
16857598--16857650	26	2.0	26	92	0	88	30	24	18	26	1.98
16859212--16859262	26	2.0	26	92	0	84	31	23	15	29	1.95
16860905--16860957	26	2.0	26	88	0	79	30	24	16	28	1.97
16863563--16863615	26	2.0	26	100	0	106	26	26	20	26	1.99
16867062--16867114	26	2.0	26	85	0	70	30	22	16	30	1.96
16862077--16871585	861	10.8	864	81	7	9545	25	24	24	25	2.00
16867951--16868003	26	2.0	26	96	0	97	28	26	18	26	1.98
16868851--16868900	25	2.0	26	92	4	84	30	26	18	26	1.98
16867164--16871585	899	4.9	896	84	5	5547	25	24	24	25	2.00
16870606--16870657	26	2.0	25	92	3	86	26	23	21	28	1.99
16871350--16871774	185	2.3	185	83	1	557	22	28	27	22	1.99
16871694--16871745	26	2.0	25	92	3	86	26	23	21	28	1.99
16872972--16873024	26	2.0	26	96	0	97	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16872792--16890125	899	19.2	900	79	8	14005	25	24	24	25	2.00
16874776--16874828	26	2.0	26	92	0	88	26	26	22	24	2.00
16875672--16875724	26	2.0	26	96	0	97	26	24	20	28	1.99
16876572--16876622	26	2.0	25	88	3	75	31	23	15	29	1.95
16876596--16876830	117	2.0	116	84	4	303	19	25	29	25	1.98
16877579--16877631	26	2.0	26	96	0	97	26	24	20	28	1.99
16877604--16877817	117	1.8	117	83	2	286	18	25	30	25	1.98
16878596--16878648	26	2.0	26	100	0	106	26	26	20	26	1.99
16877721--16890125	899	14.0	897	84	5	15131	25	24	24	25	2.00
16881282--16881334	26	2.0	26	100	0	106	26	26	20	26	1.99
16882181--16882233	26	2.0	26	96	0	97	26	24	20	28	1.99
16883931--16883983	26	2.0	26	92	0	88	30	24	18	26	1.98
16885686--16885738	26	2.0	26	96	0	97	26	28	20	24	1.99
16889218--16889265	24	2.0	24	100	0	96	25	25	20	29	1.99
16890866--16890918	26	2.0	26	85	0	70	28	24	18	28	1.98
16890298--16897141	892	7.7	888	85	5	8725	25	24	24	25	2.00
16893554--16893606	26	2.0	26	92	0	88	28	24	18	28	1.98
16895315--16895365	26	2.0	26	100	0	102	25	27	19	27	1.99
16896230--16896282	26	2.0	26	100	0	106	26	26	20	26	1.99
16890298--16897141	903	7.6	895	85	4	8378	25	24	24	25	2.00
16898316--16898368	26	2.0	26	96	0	97	28	26	18	26	1.98
16900122--16900174	26	2.0	26	88	0	79	26	20	22	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16898239--16903352	903	5.7	902	80	6	5513	25	24	24	25	2.00
16902786--16902838	26	2.0	26	92	0	88	24	24	20	30	1.99
16901017--16903352	906	2.6	902	88	2	3378	25	24	24	25	2.00
16902784--16903919	567	2.0	565	89	1	1729	28	21	23	26	1.99
16904251--16904303	26	2.0	26	92	7	90	30	26	16	26	1.97
16903349--16909155	903	6.5	899	88	3	7920	25	24	24	25	2.00
16905151--16905203	26	2.0	26	92	0	88	30	26	16	26	1.97
16906054--16906106	26	2.0	26	88	0	79	28	22	20	28	1.99
16906957--16907009	26	2.0	26	85	0	70	30	22	20	26	1.98
16908712--16908764	26	2.0	26	92	0	88	24	24	22	28	2.00
16909374--16909426	26	2.0	26	96	0	97	26	24	20	28	1.99
16909165--16911876	905	3.0	892	85	4	3596	25	24	24	25	2.00
16911732--16912105	189	2.0	185	91	3	597	25	30	20	24	1.99
16914062--16914112	26	2.0	26	92	0	84	31	23	15	29	1.95
16915722--16915774	26	2.0	26	85	7	72	24	24	20	30	1.99
16916730--16916782	26	2.0	26	85	7	72	24	24	20	30	1.99
16917443--16917811	159	2.3	159	79	3	377	20	27	28	23	1.99
16917785--16917837	26	2.0	26	88	0	79	32	22	18	26	1.97
16919093--16919121	14	2.1	14	100	0	58	27	34	13	24	1.93
16918679--16923559	904	5.5	892	83	6	5564	25	24	24	25	2.00
16921335--16921387	26	2.0	26	100	0	106	26	26	20	26	1.99
16922240--16922291	26	2.0	26	96	0	95	28	26	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16923105--16923155	26	2.0	26	92	0	84	25	23	21	29	1.99
16923695--16923747	26	2.0	26	96	0	97	32	26	15	26	1.95
16922966--16924152	592	2.0	593	86	1	1657	22	24	27	25	2.00
16924600--16924652	26	2.0	26	89	7	81	30	24	18	26	1.98
16927028--16927104	26	3.0	26	92	0	127	25	24	18	31	1.97
16927054--16930168	889	3.5	888	86	3	4231	25	24	24	26	2.00
16928844--16928896	26	2.0	26	88	0	79	30	24	18	26	1.98
16927054--16930168	903	3.5	898	87	2	4296	25	24	24	26	2.00
16929742--16929791	26	1.9	26	95	0	91	26	26	18	30	1.98
16930377--16930433	26	2.2	26	96	0	105	28	24	19	28	1.98
16931156--16931207	26	2.0	26	92	0	86	28	28	17	25	1.97
16930194--16931700	774	1.9	774	86	2	2112	25	24	24	26	2.00
16932056--16932107	26	2.0	26	88	0	77	26	26	15	30	1.96
16932081--16935810	902	4.2	872	83	7	4288	25	25	23	24	2.00
16933977--16934029	26	2.0	26	92	0	88	30	26	16	26	1.97
16934880--16934931	26	2.0	26	88	0	77	28	26	17	26	1.97
16935661--16935994	184	1.8	184	85	3	474	19	29	27	23	1.98
16936846--16936898	26	2.0	26	88	0	79	28	24	22	24	2.00
16937179--16937257	26	3.0	26	98	0	149	29	26	17	26	1.98
16937545--16937597	26	2.0	26	88	0	79	26	24	22	26	2.00
16937376--16943333	895	6.7	890	84	6	7227	25	24	24	25	2.00
16939341--16939390	26	1.9	26	95	0	91	22	28	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16940185--16940234	26	1.9	26	88	8	75	24	26	18	32	1.97
16941085--16941137	26	2.0	26	96	0	97	26	24	20	28	1.99
16941988--16942038	26	2.0	24	88	7	75	27	27	17	27	1.98
16939393--16943333	900	4.4	891	84	5	4988	25	24	24	25	2.00
16943691--16943743	26	2.0	26	92	0	88	26	22	20	30	1.98
16942527--16944142	809	2.0	806	87	1	2322	23	25	24	25	2.00
16943336--16948004	888	5.2	892	85	3	5859	25	24	24	25	2.00
16946354--16946406	26	2.0	26	96	0	97	26	24	20	28	1.99
16947249--16947301	26	2.0	26	96	0	97	26	24	20	28	1.99
16947978--16948030	26	2.0	26	92	0	88	26	26	20	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117