Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  77  of  117  ( 13967 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15903927--15904012
43
2.1
40
83
14
104
46
0
1
52
1.08
15904763--15904831
6
12.0
6
79
14
67
52
1
0
46
1.09
15904744--15904831
19
4.7
20
74
22
75
53
1
0
45
1.07
15904713--15904813
12
8.0
12
68
24
57
52
0
0
46
1.07
15904719--15904815
20
5.1
20
70
21
66
52
0
0
47
1.00
15904719--15904813
36
2.5
39
80
11
117
52
0
0
47
1.00
15905435--15905482
23
2.1
22
84
3
60
56
4
0
39
1.19
15905895--15905955
16
3.8
16
78
18
56
47
0
1
50
1.10
15906308--15906340
14
2.4
14
90
10
50
48
0
0
51
1.00
15906313--15906377
30
2.1
32
85
8
89
49
1
0
49
1.10
15906318--15906386
32
2.2
32
82
10
79
52
2
0
44
1.16
15906433--15906462
4
7.2
4
92
7
51
50
0
0
50
1.00
15906423--15906462
12
3.0
13
85
14
55
47
0
0
52
1.00
15906770--15906818
10
4.6
11
78
19
50
57
4
0
38
1.18
15906756--15906819
31
2.0
34
87
9
98
57
4
0
37
1.19
15906790--15906844
19
2.9
19
81
10
60
52
0
0
47
1.00
15907762--15907814
17
3.1
17
79
12
56
54
1
0
43
1.11
15907764--15907819
22
2.6
23
86
8
73
55
1
0
42
1.10
15907818--15907855
13
2.8
13
92
8
58
50
0
0
50
1.00
15907963--15907987
13
1.9
13
100
0
50
40
8
0
52
1.31
15908013--15908067
20
2.6
22
80
11
69
47
3
7
41
1.49
15908004--15908085
21
4.0
19
73
17
58
45
2
6
46
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15908405--15908448
18
2.4
18
76
0
52
50
0
2
47
1.13
15908455--15908504
18
2.7
19
84
12
68
50
2
0
48
1.12
15908575--15908620
21
2.1
23
92
8
78
50
0
4
45
1.21
15909061--15909390
180
1.8
180
82
1
399
40
6
11
40
1.67
15910103--15910147
20
2.2
20
80
7
56
55
0
0
44
0.99
15910170--15910748
181
3.2
180
77
8
531
42
11
7
39
1.69
15910981--15911032
18
3.1
17
78
15
63
48
1
1
48
1.24
15911211--15911261
22
2.4
22
83
9
61
45
0
3
50
1.20
15911411--15911498
12
7.2
12
75
13
65
46
1
1
51
1.15
15911437--15911533
2
53.0
2
67
17
59
51
1
1
46
1.14
15911413--15911533
24
5.2
24
68
22
82
50
0
0
47
1.12
15911429--15911533
15
7.1
14
73
19
65
52
0
0
45
1.13
15911431--15911551
44
2.7
45
76
17
117
52
0
1
44
1.16
15911391--15911520
60
2.3
56
78
18
142
49
1
1
47
1.20
15911688--15911758
30
2.6
26
81
16
74
49
1
4
45
1.30
15911855--15911902
16
3.1
16
75
3
53
50
2
0
47
1.12
15912122--15912168
22
2.1
22
92
0
76
46
2
0
51
1.13
15913042--15913109
14
4.9
14
73
5
66
51
1
0
47
1.09
15913085--15913130
19
2.4
20
82
10
60
45
4
0
50
1.21
15913557--15913713
75
2.1
74
85
3
208
34
21
18
26
1.96
15913694--15913733
20
2.0
20
95
0
71
22
30
22
25
1.99
15919866--15919897
17
2.0
17
88
11
50
25
37
0
37
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15922013--15922127
54
2.1
55
88
1
169
40
20
20
18
1.92
15923151--15923191
21
1.9
22
95
5
75
48
9
2
39
1.49
15923717--15923776
25
2.3
28
78
21
76
46
3
3
46
1.35
15923908--15923972
29
2.2
30
83
8
80
47
1
0
50
1.10
15923917--15923992
29
2.5
31
77
12
77
52
1
0
46
1.08
15924050--15924100
27
1.9
26
92
4
84
49
3
0
47
1.20
15924325--15924379
19
2.7
21
88
11
87
56
0
0
43
0.99
15924427--15924464
20
1.9
20
89
10
60
55
0
5
39
1.23
15924635--15924685
22
2.4
22
83
9
70
49
0
3
47
1.20
15924882--15924949
32
2.1
34
83
5
86
50
2
1
45
1.26
15925057--15925096
20
2.0
21
85
14
57
40
0
0
60
0.97
15925439--15925465
14
1.9
14
100
0
54
37
0
0
62
0.95
15925809--15925858
14
3.6
14
74
17
50
50
2
2
46
1.24
15925809--15925899
12
6.9
13
73
21
50
54
1
2
41
1.19
15925860--15925901
18
2.4
18
80
15
52
61
0
0
38
0.96
15926063--15926104
19
2.2
20
86
4
59
50
2
2
45
1.27
15926170--15926212
12
3.5
12
78
6
50
48
0
2
48
1.14
15926179--15926245
23
2.8
24
75
8
66
56
0
2
40
1.14
15926380--15926488
33
3.1
34
78
12
98
48
0
0
50
1.07
15926436--15926476
8
5.2
8
80
14
50
51
0
0
48
1.00
15926406--15926465
15
3.9
15
75
14
59
48
0
0
51
1.00
15926436--15926488
23
2.3
23
84
15
65
49
0
1
49
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15926867--15926895
13
2.1
14
93
6
51
44
3
0
51
1.18
15927319--15927354
14
2.6
14
86
0
54
86
0
2
11
0.68
15927404--15927474
36
2.0
36
94
0
124
21
29
26
22
1.99
15927604--15927686
43
2.0
41
85
4
112
42
20
16
20
1.90
15927961--15927998
20
1.9
20
88
0
58
31
18
13
36
1.89
15928029--15928195
22
7.5
22
81
9
189
35
15
10
38
1.81
15928607--15928997
63
6.2
63
74
8
312
28
26
10
34
1.89
15928561--15928975
63
6.6
62
73
8
193
28
25
10
34
1.90
15929768--15929812
17
2.6
18
89
7
74
6
13
0
80
0.91
15929773--15929815
24
1.9
21
86
13
59
6
13
0
79
0.93
15933687--15934152
63
7.6
63
74
11
346
34
10
25
29
1.89
15934520--15934606
21
4.0
21
74
11
84
40
9
14
35
1.79
15934523--15934610
46
1.9
46
85
0
122
43
7
14
34
1.75
15935082--15935143
27
2.3
27
83
13
74
50
1
0
48
1.10
15935110--15935178
20
3.3
20
76
13
68
49
0
2
47
1.16
15935189--15935228
20
2.0
21
90
5
64
50
2
2
45
1.28
15936800--15936844
22
2.0
22
86
0
63
44
6
8
40
1.62
15936989--15937031
14
3.3
13
84
15
54
74
0
0
25
0.82
15936986--15937028
21
2.1
20
86
4
59
74
0
0
25
0.82
15936916--15937037
6
18.3
6
71
19
57
70
2
2
24
1.12
15936991--15937031
20
2.0
21
85
4
57
73
0
0
26
0.84
15937512--15937553
12
3.6
12
81
12
52
57
19
2
21
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15937801--15937870
22
3.3
20
80
11
77
67
0
7
25
1.16
15937832--15938006
18
9.3
19
71
14
96
66
1
3
28
1.18
15937833--15938002
4
43.8
4
70
15
83
65
1
3
28
1.19
15937851--15938010
14
11.9
14
70
17
99
66
1
3
28
1.17
15937826--15937965
53
2.7
53
78
9
137
64
1
4
30
1.21
15937834--15937998
35
4.5
34
73
17
118
65
1
3
29
1.20
15937853--15937989
31
4.5
31
74
17
121
64
2
3
29
1.23
15937950--15938023
8
10.0
7
75
16
53
75
2
1
20
1.00
15938205--15938453
40
5.9
43
86
5
296
42
20
12
23
1.87
15938218--15938495
86
3.3
83
82
8
321
43
19
12
25
1.85
15938430--15938564
67
2.0
67
84
8
177
40
17
11
30
1.85
15938471--15938523
26
2.0
26
92
0
88
41
15
13
30
1.85
15938513--15938606
41
2.3
41
90
3
145
42
21
11
24
1.86
15939592--15939641
20
2.5
20
80
3
55
4
14
2
80
0.95
15939610--15939644
9
3.9
9
84
0
52
0
11
2
85
0.69
15939608--15939685
26
3.0
25
76
14
61
5
12
1
80
0.93
15939630--15939682
24
2.2
24
87
9
74
7
13
0
79
0.93
15946370--15946424
10
5.0
11
85
12
69
78
0
3
18
0.90
15946370--15946418
5
9.2
5
79
20
55
79
0
2
18
0.83
15946450--15946490
3
13.7
3
94
0
73
68
2
0
29
1.03
15946371--15946490
12
10.2
12
76
13
74
68
4
1
25
1.17
15946378--15946529
6
24.8
6
75
12
62
69
3
1
25
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15946922--15946980
31
1.9
31
89
0
91
52
20
5
22
1.65
15947310--15947393
42
2.0
40
86
4
114
65
1
7
26
1.25
15947318--15947479
20
7.8
20
75
12
121
67
1
4
26
1.19
15947348--15947512
4
40.8
4
70
19
85
69
1
3
25
1.12
15947288--15947511
44
5.2
43
72
16
137
68
2
4
25
1.20
15947672--15947721
22
2.3
21
80
6
55
52
0
0
48
1.00
15947821--15947853
9
3.7
9
92
8
50
54
9
0
36
1.32
15947959--15948027
20
3.2
22
74
13
63
40
1
1
56
1.17
15947995--15948085
30
3.1
29
75
13
87
45
0
2
52
1.13
15948058--15948151
14
7.3
12
72
18
57
44
1
2
52
1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117