genome.fa.s90.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  37  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9203340--9203500	41	4.3	39	68	21	110	29	1	4	65	1.20
9203572--9203613	3	14.0	3	100	0	84	33	0	0	66	0.92
9204290--9204315	12	2.2	12	100	0	52	15	42	34	7	1.75
9204516--9204595	6	13.7	6	75	15	69	15	2	2	80	0.93
9204517--9204603	5	16.4	5	81	11	86	14	2	3	79	0.97
9204606--9204801	61	3.4	57	80	8	234	46	7	10	35	1.66
9206186--9206224	20	2.0	20	90	10	62	79	2	12	5	1.00
9208159--9208204	18	2.6	18	80	16	60	30	0	2	67	1.03
9210038--9210077	3	13.3	3	100	0	80	65	0	35	0	0.93
9211540--9211921	190	2.0	190	91	0	611	26	11	28	34	1.91
9211394--9212765	514	2.6	517	88	1	2014	28	9	27	34	1.89
9212328--9212552	123	1.8	123	86	0	324	28	6	28	36	1.82
9212245--9212885	330	1.9	329	88	0	951	28	9	27	34	1.88
9212658--9212882	123	1.8	123	87	1	335	30	5	28	35	1.81
9212820--9212964	76	1.9	75	88	1	218	33	4	31	31	1.77
9218186--9218218	17	2.0	17	88	5	50	18	21	0	60	1.36
9218587--9218994	144	2.8	144	77	7	436	42	9	14	33	1.78
9219132--9219178	20	2.3	20	85	7	60	29	6	8	55	1.55
9219478--9219513	19	1.9	18	88	5	54	2	0	11	86	0.68
9219726--9219829	37	2.9	36	75	5	102	57	19	10	12	1.63
9219906--9220007	36	2.9	36	80	10	111	56	15	10	16	1.66
9220039--9220105	18	3.8	17	67	9	53	59	8	11	19	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9220041--9220114	36	2.1	36	81	0	85	58	12	10	18	1.63
9220462--9220504	4	10.8	4	85	9	61	23	2	0	74	0.93
9220459--9220507	21	2.4	21	83	12	66	24	2	0	73	0.94
9226198--9226227	15	1.9	16	93	6	53	80	0	3	16	0.85
9226601--9226694	35	2.5	36	75	14	93	79	0	10	9	0.93
9226607--9226696	29	3.3	27	76	14	76	77	0	12	10	0.98
9226600--9226701	8	12.5	8	77	14	75	78	0	10	10	0.97
9226654--9226704	26	2.0	26	85	11	70	72	0	15	11	1.12
9227754--9227837	21	4.1	21	86	6	127	33	7	19	40	1.78
9227754--9227837	40	2.0	41	88	4	125	33	7	19	40	1.78
9228498--9228557	18	3.3	18	81	4	75	45	13	8	33	1.73
9228498--9228555	19	3.1	19	75	5	64	46	13	8	31	1.74
9228680--9228997	44	7.4	44	76	10	248	26	12	17	43	1.85
9228680--9228962	128	2.2	127	78	5	286	26	12	18	43	1.85
9228816--9228939	39	3.1	39	76	8	104	23	12	21	42	1.86
9231104--9231136	12	2.6	13	90	4	50	78	0	0	21	0.75
9244943--9244991	3	16.3	3	95	0	89	34	0	0	65	0.93
9262736--9262780	18	2.4	19	85	11	65	51	2	0	46	1.13
9263297--9263326	15	2.0	15	93	0	51	76	0	23	0	0.78
9263296--9263345	16	3.1	16	79	2	55	70	0	30	0	0.88
9264047--9264071	7	3.6	7	100	0	50	76	0	0	24	0.80
9264818--9264851	15	2.3	15	94	0	59	85	0	14	0	0.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9266392--9266424	18	1.9	17	88	11	50	42	21	9	27	1.83
9274154--9274192	13	2.9	13	85	14	53	84	2	7	5	0.84
9276816--9276867	22	2.3	23	81	15	65	46	15	9	28	1.77
9276816--9276882	22	3.0	20	79	12	62	43	17	10	28	1.82
9276859--9276915	27	2.1	27	83	0	69	43	12	10	33	1.76
9277092--9277218	37	3.4	36	73	7	119	46	11	11	29	1.76
9277124--9277452	18	17.5	19	66	11	81	46	10	12	31	1.75
9277198--9277288	38	2.4	37	87	1	119	45	13	13	28	1.81
9277128--9277433	94	3.3	93	82	7	377	45	10	12	31	1.75
9277124--9277251	56	2.3	57	87	4	179	47	10	11	30	1.73
9277198--9277305	38	2.8	39	80	5	105	46	12	13	26	1.80
9277302--9277394	36	2.5	37	89	1	134	46	7	9	36	1.65
9277310--9277423	37	3.1	37	85	2	131	46	8	10	34	1.69
9277352--9277433	20	4.2	20	70	9	71	46	9	10	32	1.72
9278741--9278784	3	14.7	3	100	0	88	68	0	0	31	0.90
9278768--9278830	22	2.9	23	77	13	62	63	0	9	26	1.25
9278865--9279131	117	2.3	118	85	1	349	49	4	9	36	1.57
9280213--9280252	15	2.7	15	96	3	73	35	12	20	32	1.90
9280247--9280313	23	3.0	21	81	12	73	43	13	8	34	1.75
9280258--9280319	21	2.8	20	79	13	61	43	12	9	33	1.76
9281173--9281206	13	2.5	14	90	4	52	35	17	23	23	1.95
9283183--9283354	58	3.0	57	75	10	170	46	30	2	20	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9283200--9283409	29	7.3	29	72	8	153	47	31	1	19	1.60
9283201--9283393	58	3.4	57	80	4	217	46	32	1	19	1.59
9283455--9283559	31	3.5	31	73	13	103	46	25	2	24	1.66
9283640--9283690	7	7.0	7	75	16	50	52	29	0	17	1.45
9283627--9283689	15	4.3	15	80	9	69	52	31	0	15	1.44
9287008--9287082	4	18.8	4	78	5	71	24	22	4	49	1.67
9288580--9288626	13	3.2	16	72	22	50	74	12	2	10	1.16
9289722--9289785	21	3.1	20	73	8	65	48	25	1	25	1.60
9289773--9289849	15	5.3	14	70	17	50	46	36	3	12	1.61
9289764--9289935	58	2.9	57	81	4	191	47	33	2	16	1.60
9289715--9289954	28	8.4	28	71	11	146	47	31	2	18	1.62
9289946--9290019	30	2.5	30	77	0	76	43	24	8	24	1.81
9289998--9290113	31	3.9	30	73	10	94	48	24	2	25	1.64
9290012--9290127	58	2.0	59	84	1	153	47	24	3	25	1.67
9295964--9295997	16	2.1	17	88	5	52	29	2	0	67	1.05
9296153--9296199	22	2.1	22	88	0	67	61	10	0	27	1.29
9297611--9297771	62	2.6	61	79	7	148	40	22	3	33	1.69
9297866--9298199	129	2.6	126	79	7	363	43	11	6	38	1.67
9297865--9298280	129	3.3	127	78	6	312	42	12	6	39	1.68
9299776--9299809	17	2.1	16	89	10	52	88	5	5	0	0.64
9302905--9302934	13	2.3	13	100	0	60	40	16	0	43	1.48
9303908--9303958	23	2.2	23	96	0	93	35	1	9	52	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9311327--9311382	15	3.6	15	83	9	60	80	0	14	5	0.88
9312584--9312656	38	1.9	38	85	0	101	34	9	13	42	1.77
9312901--9312956	3	18.7	3	92	0	94	33	28	0	37	1.58
9313873--9313918	20	2.3	21	85	14	62	10	4	6	78	1.08
9313987--9314019	12	2.6	13	85	9	50	60	0	6	33	1.21
9314176--9314233	3	19.3	3	96	0	107	67	1	0	31	1.01
9322750--9322847	32	3.1	31	92	5	160	58	5	13	23	1.55
9325637--9325741	49	2.2	48	80	11	117	28	17	9	44	1.79
9325689--9325806	55	2.2	55	83	4	141	29	14	10	45	1.77
9326142--9326177	15	2.4	15	95	0	63	63	13	8	13	1.50
9333721--9333900	63	2.9	61	79	6	182	33	12	14	40	1.83
9334873--9334930	27	2.2	26	81	9	64	22	13	3	60	1.49
9338352--9338393	12	3.3	12	81	12	57	42	2	9	45	1.49
9342846--9342927	38	2.2	38	80	8	98	53	8	9	28	1.63
9344244--9344279	2	18.0	2	88	0	54	50	0	2	47	1.15
9344810--9344904	21	4.5	21	71	5	66	31	6	12	49	1.66
9345205--9345397	22	8.8	22	76	5	131	36	8	10	44	1.70
9345257--9345428	44	3.9	43	77	10	134	37	7	12	43	1.71
9345322--9345471	22	6.8	22	74	11	96	36	8	10	44	1.70
9345300--9345471	66	2.6	64	79	12	156	36	9	10	43	1.71
9345346--9345484	44	3.2	43	82	9	140	36	9	10	43	1.71
9345300--9345484	22	8.5	22	72	14	82	36	9	10	43	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9348874--9348966	22	4.3	22	82	8	91	38	12	5	43	1.66
9348874--9348968	43	2.2	44	81	7	113	38	12	5	43	1.65
9350002--9350049	11	4.2	11	80	17	53	12	0	16	70	1.16
9349998--9350047	23	2.1	24	85	10	68	12	0	18	70	1.17
9349998--9350030	11	2.8	12	90	9	59	9	0	24	66	1.20
9351364--9351446	12	6.9	12	72	5	60	40	2	25	31	1.68
9351400--9351454	24	2.3	24	74	0	56	36	3	27	32	1.74
9353925--9354002	33	2.4	34	78	8	90	20	32	5	42	1.74
9355018--9355089	31	2.3	32	90	2	119	29	6	8	55	1.56
9355774--9355868	42	2.3	42	81	5	111	53	13	10	22	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117