genome.fa.s90.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  4  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
930264--930378	57	2.0	56	83	9	144	24	7	11	56	1.60
932047--932153	43	2.5	43	87	4	144	48	21	10	19	1.78
932088--932227	73	1.9	73	86	2	201	45	20	13	20	1.84
932157--932310	44	3.4	44	83	4	200	44	17	15	22	1.86
932158--932298	46	3.1	46	83	3	187	45	17	14	22	1.85
943718--943977	109	2.4	110	85	7	325	26	11	8	52	1.67
944152--944515	189	1.9	187	82	9	454	39	10	4	45	1.60
950166--950244	18	3.9	20	73	15	63	50	8	3	36	1.52
950317--950372	24	2.3	23	82	8	76	53	8	5	32	1.55
950455--950544	20	4.8	20	71	20	79	52	10	5	32	1.58
950556--950805	32	8.4	31	69	21	160	54	10	4	30	1.56
950600--950773	56	3.1	55	82	5	192	55	9	5	30	1.53
950770--950818	22	2.3	22	79	6	57	59	10	0	30	1.31
950464--950797	175	1.9	172	86	5	476	54	10	4	29	1.55
950848--950983	24	5.8	24	69	18	81	54	6	3	35	1.44
950960--951002	21	2.0	21	86	0	59	55	13	2	27	1.51
951022--951056	17	2.1	17	89	10	54	62	17	0	20	1.32
951608--951637	12	2.5	12	88	0	51	66	0	3	30	1.07
954647--954777	69	1.9	69	88	0	199	19	18	38	23	1.93
958901--958989	40	2.2	41	92	4	146	30	1	2	66	1.11
961278--961333	3	18.7	3	100	0	112	67	0	0	32	0.91
964130--964158	2	15.0	2	92	7	51	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
966248--966292	21	2.1	22	83	4	56	33	6	0	60	1.23
975769--975796	14	2.0	14	100	0	56	28	28	14	28	1.95
977050--977076	5	5.4	5	100	0	54	22	0	55	22	1.44
978004--978051	20	2.4	19	82	6	60	47	0	0	52	1.00
980150--980195	22	2.1	21	88	4	65	56	0	0	43	0.99
980132--980195	25	2.8	23	79	11	60	56	0	0	43	0.99
980506--980615	46	2.4	47	80	7	136	42	2	3	50	1.34
980553--980655	28	3.6	29	76	8	95	40	2	1	54	1.26
980599--980655	29	2.0	27	83	12	71	42	1	0	56	1.10
983007--983045	3	13.0	3	100	0	78	33	0	0	66	0.92
984323--984362	16	2.5	17	80	15	50	50	0	0	50	1.00
986958--987022	19	3.6	20	67	28	56	49	7	0	43	1.31
987537--987584	16	3.1	16	74	17	55	50	8	2	39	1.44
988022--988131	29	3.8	29	72	8	82	40	2	2	53	1.29
988986--989053	35	1.9	35	84	0	91	42	4	8	44	1.55
989396--989495	36	3.0	32	70	24	89	58	2	2	38	1.21
989551--989601	19	2.7	18	81	6	57	45	1	0	52	1.12
994386--994473	14	6.1	14	72	9	61	46	0	1	52	1.08
994432--994473	15	2.9	15	89	3	68	47	0	0	52	1.00
994430--994479	15	3.4	14	81	8	55	50	2	0	48	1.12
995332--995375	20	2.2	20	83	0	52	50	0	4	45	1.22
995909--995981	30	2.5	28	84	6	83	36	1	1	60	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1000745--1000780	14	2.6	14	86	0	54	0	36	13	50	1.43
1002897--1002947	23	2.3	22	89	3	75	19	5	7	66	1.38
1006761--1006793	10	3.4	10	91	4	50	0	9	0	90	0.44
1010729--1010758	15	2.0	15	93	0	51	50	0	50	0	1.00
1019332--1019364	2	17.0	2	93	6	59	48	0	0	51	1.00
1019984--1020034	16	3.3	15	77	2	57	62	1	0	35	1.06
1020131--1020160	15	2.0	15	93	0	51	63	0	0	36	0.95
1024825--1024865	19	2.2	19	86	8	57	36	2	4	56	1.34
1026081--1026125	2	22.5	2	100	0	90	48	0	0	51	1.00
1026221--1026245	2	12.5	2	100	0	50	48	0	0	52	1.00
1028579--1028608	2	15.0	2	92	0	51	50	0	3	46	1.18
1031637--1032062	209	2.0	212	95	1	768	26	22	21	29	1.99
1032058--1032084	14	1.9	14	100	0	54	48	7	7	37	1.59
1032341--1032376	12	3.0	12	91	0	54	38	2	11	47	1.54
1042823--1042890	34	2.0	34	88	0	100	41	11	23	23	1.87
1046603--1046659	15	3.6	15	77	13	53	75	8	3	12	1.16
1046630--1046660	16	1.9	16	93	0	53	80	6	0	12	0.89
1046931--1046975	19	2.4	19	88	0	63	24	22	31	22	1.99
1047028--1047098	31	2.3	31	90	4	108	29	25	23	21	1.99
1047669--1047696	7	4.0	7	100	0	56	85	0	0	14	0.59
1047737--1047791	20	2.8	20	94	0	92	21	29	29	20	1.98
1047817--1047841	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1048582--1048620	20	2.0	20	94	0	69	33	0	0	66	0.92
1048604--1048640	12	3.2	12	85	14	51	35	0	0	64	0.94
1048593--1048644	14	3.5	16	73	23	51	34	0	0	65	0.93
1048604--1048664	25	2.5	24	81	5	68	40	0	0	59	0.98
1050783--1051090	143	2.1	142	83	7	367	40	7	17	35	1.77
1051926--1052017	47	2.0	46	93	4	159	42	6	9	41	1.64
1056100--1056134	17	1.9	19	88	11	56	40	0	0	60	0.97
1064473--1064497	2	12.5	2	100	0	50	48	0	52	0	1.00
1067047--1067090	19	2.2	20	84	11	56	47	2	6	43	1.42
1069202--1069602	114	3.5	111	72	7	290	25	24	13	36	1.92
1069870--1069899	16	1.9	15	93	6	51	80	0	0	20	0.72
1071362--1071430	31	2.2	32	94	2	122	30	15	17	36	1.91
1072841--1073019	89	2.0	89	92	0	295	29	17	13	39	1.89
1073687--1073711	10	2.5	10	100	0	50	28	0	0	72	0.86
1073731--1073771	18	2.2	20	86	8	59	48	7	4	39	1.52
1080762--1080786	12	2.1	12	100	0	50	48	20	16	16	1.82
1081560--1081584	12	2.1	12	100	0	50	44	0	0	56	0.99
1084604--1084658	23	2.2	23	84	12	65	29	3	0	67	1.08
1085961--1086523	282	2.0	283	97	1	1060	36	7	9	45	1.66
1086775--1086834	28	2.1	28	82	11	70	45	0	1	53	1.10
1086887--1086917	11	2.7	12	95	5	55	16	0	0	83	0.64
1086887--1086917	6	5.3	6	92	7	55	16	0	0	83	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1087183--1087246	25	2.6	24	74	16	67	40	0	1	57	1.08
1097364--1097395	3	10.7	3	100	0	64	68	0	0	31	0.90
1098302--1098344	2	21.5	2	95	0	68	46	0	4	48	1.22
1108737--1108795	29	2.0	29	80	6	66	59	3	0	37	1.14
1119015--1119058	2	21.5	2	95	4	79	47	2	0	50	1.13
1124319--1124344	12	2.2	12	100	0	52	57	7	0	34	1.27
1124406--1124431	12	2.2	12	100	0	52	57	7	0	34	1.27
1125543--1125581	21	1.9	19	90	10	60	46	5	7	41	1.55
1130012--1130072	14	4.1	14	74	12	50	42	0	1	55	1.09
1130016--1130082	31	2.2	31	83	5	82	44	0	2	52	1.16
1130012--1130084	32	2.3	30	75	9	74	45	0	2	52	1.15
1130083--1130132	24	2.1	23	85	3	64	50	0	0	50	1.00
1130126--1130159	13	2.6	14	86	13	54	41	0	0	58	0.98
1131257--1131289	11	2.9	12	91	8	52	30	0	0	69	0.88
1131286--1131331	19	2.4	20	82	10	60	47	2	0	50	1.13
1131291--1131337	19	2.6	18	80	12	51	48	2	0	48	1.13
1131322--1131374	22	2.5	21	76	14	54	41	3	3	50	1.38
1135833--1135897	24	2.7	24	73	4	60	18	38	10	32	1.85
1137539--1137567	5	5.8	5	100	0	58	62	0	37	0	0.96
1153528--1153557	2	15.0	2	100	0	60	50	0	0	50	1.00
1162601--1162625	3	8.3	3	100	0	50	36	0	0	64	0.94
1173604--1173637	12	2.8	12	90	4	50	82	0	5	11	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1193883--1193917	15	2.3	15	95	0	61	5	22	0	71	1.07
1194115--1194147	12	2.8	12	95	0	57	0	36	6	57	1.23
1194127--1194217	33	2.8	33	87	0	137	4	34	10	50	1.58
1207336--1207374	17	2.3	16	83	12	51	53	10	7	28	1.62
1210278--1210355	38	2.0	39	90	2	122	25	24	15	34	1.95
1212063--1212106	22	2.0	22	90	0	70	34	9	13	43	1.76
1215953--1215996	22	2.0	22	95	0	79	31	11	13	43	1.80
1218303--1218341	20	2.0	20	100	0	78	41	12	10	35	1.77
1218301--1218344	20	2.3	18	85	14	70	40	11	11	36	1.77
1219515--1219556	2	21.0	2	95	0	75	0	52	0	47	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117