genome.fa.s90.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  67  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14486470--14486501	7	4.9	7	85	14	50	78	0	0	21	0.76
14503747--14503959	64	3.3	65	77	7	227	33	13	11	41	1.81
14504160--14504277	62	1.9	63	82	5	150	33	10	14	41	1.79
14505661--14505686	7	3.7	7	100	0	52	26	0	0	73	0.84
14506014--14506055	21	2.0	21	85	4	57	73	26	0	0	0.83
14506834--14506872	10	4.0	10	83	6	53	66	0	2	30	1.05
14506832--14506872	19	2.2	19	90	0	64	68	0	2	29	1.03
14508544--14508580	20	1.9	19	89	10	58	78	13	2	5	1.03
14511548--14511603	16	3.3	17	78	14	62	73	0	16	10	1.10
14511539--14511608	34	2.0	34	83	8	88	70	4	14	11	1.31
14513295--14513418	24	4.9	25	80	12	146	41	8	11	37	1.72
14513295--14513418	51	2.4	51	94	0	212	41	8	11	37	1.72
14513664--14514051	134	2.8	133	83	3	479	29	11	15	43	1.82
14513991--14514092	42	2.4	42	91	0	159	28	6	18	46	1.75
14513867--14514230	179	2.0	179	87	0	521	29	10	15	44	1.80
14514041--14514293	137	1.8	137	92	0	425	29	9	16	44	1.80
14514028--14514330	137	2.2	136	86	2	417	27	10	16	45	1.80
14514319--14514395	33	2.3	33	90	0	118	22	14	23	40	1.90
14514358--14514574	99	2.2	99	84	0	283	23	14	20	41	1.88
14514457--14514694	131	1.8	131	85	1	334	24	14	19	40	1.90
14514585--14514810	99	2.3	99	81	1	247	24	14	19	42	1.88
14514793--14514855	33	1.9	33	90	0	99	22	12	20	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14514318--14515053	230	3.2	230	80	3	800	24	13	19	42	1.87
14515716--14515743	6	4.7	6	100	0	56	71	28	0	0	0.86
14515728--14515765	16	2.4	16	83	12	51	73	23	0	2	0.95
14516401--14516425	13	1.9	13	100	0	50	32	4	8	56	1.47
14516528--14516572	13	3.4	13	85	11	56	66	0	2	31	1.04
14516528--14516573	7	6.9	7	78	9	51	67	0	2	30	1.03
14516517--14516556	17	2.4	16	84	12	53	72	0	5	22	1.04
14525102--14525168	28	2.3	29	87	2	91	14	7	13	64	1.49
14526156--14526197	20	2.1	20	100	0	84	21	23	19	35	1.96
14532099--14532242	72	2.0	72	94	0	252	23	10	18	47	1.79
14541103--14541156	22	2.5	22	84	6	65	37	5	5	51	1.49
14541114--14541156	22	1.9	22	90	4	68	39	4	4	51	1.44
14546619--14546756	55	2.5	55	86	0	195	29	8	13	48	1.72
14546852--14546898	24	2.0	24	83	8	60	42	2	0	55	1.12
14547036--14547071	15	2.4	15	95	0	63	63	13	8	13	1.50
14547597--14547723	68	1.9	68	83	0	164	43	12	7	36	1.72
14558899--14558988	45	2.0	45	91	0	144	32	14	14	38	1.86
14568411--14568503	36	2.6	36	79	6	109	32	4	26	36	1.76
14569316--14569349	14	2.3	15	90	5	52	58	2	0	38	1.13
14569340--14569374	18	1.9	18	88	11	54	68	0	2	28	1.04
14569474--14569500	10	2.7	10	100	0	54	81	0	0	18	0.69
14569660--14569712	12	4.5	12	77	13	56	33	1	1	62	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14569845--14569916	29	2.5	29	79	2	74	51	1	1	45	1.18
14569875--14569915	15	2.9	14	80	20	50	48	0	2	48	1.14
14575294--14575324	13	2.3	14	94	5	55	16	3	0	80	0.83
14575423--14575461	18	2.2	18	86	9	53	56	5	0	38	1.22
14575805--14575855	16	3.2	16	75	24	54	82	1	11	3	0.89
14576504--14576542	14	2.9	13	85	14	53	30	0	0	69	0.89
14577905--14577936	2	16.0	2	100	0	64	50	0	0	50	1.00
14582047--14582098	22	2.5	20	84	9	59	73	1	5	19	1.14
14582955--14583001	3	15.7	3	100	0	94	68	0	0	31	0.90
14583562--14583644	3	29.7	3	75	18	63	34	0	4	60	1.18
14583564--14583597	16	2.1	17	88	5	52	32	0	2	64	1.08
14584038--14584113	40	1.9	40	83	5	100	21	2	27	48	1.63
14584254--14584401	5	27.0	5	71	20	84	35	4	6	54	1.44
14584236--14584289	22	2.6	22	80	8	60	33	12	1	51	1.51
14584254--14584400	29	4.9	29	73	17	95	35	4	6	54	1.44
14584301--14584422	18	7.1	16	76	20	106	35	2	4	57	1.34
14584314--14584423	8	13.6	8	70	24	65	34	0	5	59	1.27
14584272--14584407	13	9.9	14	69	24	67	35	2	5	55	1.39
14584314--14584404	3	32.3	3	71	20	63	36	1	5	57	1.29
14585191--14585239	25	2.0	25	84	8	64	14	4	2	79	0.97
14585193--14585252	30	1.9	32	86	6	88	18	3	1	76	1.00
14585190--14585262	18	3.8	19	75	14	60	19	2	1	76	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14585329--14585417	46	2.0	45	84	8	119	60	6	5	26	1.44
14586213--14586294	41	2.0	41	87	0	119	20	17	3	58	1.53
14587246--14587513	134	2.0	133	97	0	509	41	11	16	30	1.84
14591100--14591440	181	1.9	181	82	2	425	41	7	7	43	1.62
14591518--14591558	19	2.2	19	86	0	55	39	12	7	41	1.70
14591663--14591696	18	2.0	17	88	11	52	44	5	2	47	1.42
14592649--14592702	10	5.3	10	72	27	51	50	1	0	48	1.11
14599303--14599353	22	2.5	19	84	9	57	35	13	1	49	1.54
14599324--14599525	3	72.3	3	68	20	82	32	2	6	57	1.40
14599314--14599525	11	19.5	11	68	18	97	32	3	6	57	1.43
14599327--14599462	5	27.0	5	71	20	79	33	3	5	56	1.41
14599324--14599525	8	24.9	8	67	21	75	32	2	6	57	1.40
14599324--14599462	24	5.8	23	75	13	97	33	3	5	56	1.40
14601518--14601586	13	5.4	13	69	10	52	17	4	2	75	1.09
14601544--14601606	26	2.5	25	82	7	74	17	3	6	73	1.18
14601544--14601607	25	2.5	25	82	7	76	17	3	6	73	1.17
14606059--14606172	57	1.9	59	85	5	160	57	9	19	13	1.63
14606429--14606485	8	7.2	8	80	9	64	85	1	10	1	0.73
14606428--14606482	11	5.4	10	79	10	58	87	1	9	1	0.70
14606428--14606485	23	2.5	23	88	2	80	86	1	10	1	0.73
14606450--14606487	18	2.1	19	95	5	69	86	0	13	0	0.56
14606428--14606487	18	3.0	20	79	20	65	85	1	11	1	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14606428--14606494	22	3.0	23	82	6	75	83	1	13	1	0.79
14607656--14607711	22	2.5	22	82	5	60	26	0	8	64	1.23
14608200--14608250	20	2.5	20	83	0	66	23	0	25	50	1.49
14608352--14608389	19	2.0	19	94	0	67	21	13	26	39	1.89
14608711--14608771	21	3.0	20	79	9	63	16	1	3	78	0.96
14608839--14608863	11	2.3	11	100	0	50	72	0	0	28	0.86
14608909--14608945	17	2.2	18	85	9	51	56	10	0	32	1.34
14620830--14620929	52	1.9	52	85	6	139	34	11	16	39	1.83
14620936--14621030	50	1.9	50	85	6	131	31	10	12	45	1.76
14620998--14621093	43	2.3	42	87	3	147	30	10	15	43	1.80
14622338--14622375	18	2.1	18	85	9	51	65	0	10	23	1.23
14622517--14622568	27	1.9	27	88	0	77	73	1	7	17	1.16
14623079--14623106	14	2.0	14	100	0	56	42	14	14	28	1.84
14623430--14623486	10	6.1	10	72	15	59	49	0	0	50	1.00
14623433--14623485	18	2.9	18	77	8	54	52	0	0	47	1.00
14624781--14624838	26	2.1	27	84	9	73	44	0	5	50	1.24
14625750--14625796	18	2.7	18	83	9	53	68	6	0	25	1.13
14628334--14628411	37	2.0	38	90	7	122	56	3	1	38	1.26
14628401--14628495	40	2.3	40	79	12	106	40	1	2	56	1.18
14628907--14628939	2	16.5	2	100	0	66	48	0	0	51	1.00
14631866--14631895	16	1.9	16	93	6	53	20	3	3	73	1.12
14634225--14634306	39	2.1	40	90	2	130	32	18	9	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14636189--14636235	22	2.1	22	100	0	94	55	4	12	27	1.56
14640919--14640971	18	2.9	18	74	0	61	33	1	0	64	1.05
14641013--14641539	69	7.8	67	81	9	493	50	6	11	32	1.62
14641057--14641112	25	2.2	25	78	15	62	53	1	10	33	1.46
14641013--14641540	134	3.9	133	82	7	563	50	6	10	32	1.62
14641295--14641541	71	3.6	69	84	6	306	54	5	11	28	1.59
14650253--14650285	16	2.1	16	100	0	66	45	6	6	42	1.53
14652153--14652383	58	3.8	57	79	10	212	53	6	18	21	1.68
14652155--14652383	61	3.8	60	83	6	241	52	6	18	21	1.68
14652155--14652383	64	3.7	62	82	10	235	52	6	18	21	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117