genome.fa.s90.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  51  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11640044--11640094	17	2.9	19	85	8	65	68	0	21	9	1.18
11640047--11640093	8	5.6	8	87	9	67	68	0	21	10	1.20
11640037--11640100	26	2.5	25	78	9	76	73	0	18	7	1.07
11641261--11641369	49	2.2	50	85	8	143	28	6	18	46	1.73
11641361--11641477	44	2.7	44	84	0	153	29	8	19	41	1.81
11641478--11641644	44	3.8	43	76	3	154	35	14	11	37	1.83
11641880--11641921	18	2.3	19	79	4	50	21	2	9	66	1.32
11642390--11642453	28	2.2	29	83	5	76	20	4	28	46	1.70
11643013--11643063	12	4.1	12	80	9	57	25	1	9	62	1.36
11643008--11643060	26	2.0	26	96	0	97	22	1	11	64	1.36
11643008--11643076	26	2.7	26	86	4	86	23	2	8	65	1.35
11643055--11643092	20	1.9	20	88	0	58	26	5	5	63	1.37
11643082--11643145	18	3.5	17	74	18	58	25	9	15	50	1.74
11646279--11646320	21	1.9	22	85	9	59	33	4	7	54	1.49
11647433--11647457	9	2.8	9	100	0	50	40	12	24	24	1.88
11653983--11654043	31	2.0	30	87	3	86	39	9	4	45	1.59
11654697--11654743	23	2.0	23	83	4	58	23	23	10	42	1.85
11664656--11664712	30	1.9	30	89	7	89	45	8	22	22	1.80
11664664--11664722	30	2.0	30	86	0	82	44	10	23	22	1.83
11672060--11672130	36	2.0	36	82	0	88	47	21	8	22	1.77
11673846--11673879	16	2.1	16	89	10	52	76	0	0	23	0.79
11675445--11675476	17	1.9	17	93	6	57	0	9	12	78	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11676619--11676665	18	2.7	17	81	18	53	70	0	8	21	1.14
11677036--11677067	3	10.3	3	93	6	55	65	3	0	31	1.08
11684510--11684600	43	2.1	43	91	0	146	41	9	16	31	1.81
11688773--11688983	114	1.9	113	88	3	325	33	12	15	38	1.85
11688958--11689230	44	6.2	44	76	4	158	31	11	14	42	1.81
11689009--11689119	43	2.6	43	78	9	118	31	7	13	47	1.70
11689026--11689234	44	4.8	44	76	8	162	33	11	13	41	1.80
11688958--11689230	88	3.1	87	74	8	257	31	11	14	42	1.81
11689242--11689302	27	2.2	28	82	5	79	29	8	9	52	1.63
11689279--11689405	42	3.0	42	77	3	128	33	14	11	40	1.82
11689385--11689473	45	2.0	46	82	8	112	23	11	22	42	1.85
11689399--11689504	46	2.3	47	81	12	123	27	10	23	38	1.87
11689744--11689807	3	21.3	3	96	0	119	31	0	1	67	1.00
11690034--11690064	11	2.8	11	100	0	62	9	29	16	45	1.79
11690065--11690110	18	2.6	17	89	3	65	84	10	2	2	0.79
11690069--11690116	16	3.0	16	79	8	53	79	10	4	6	1.05
11690825--11690849	9	2.8	9	100	0	50	76	0	0	24	0.80
11693053--11693089	19	1.9	19	88	0	56	2	5	2	89	0.66
11694263--11694685	124	3.4	123	87	1	569	45	9	10	33	1.72
11696482--11696515	18	1.9	18	94	5	61	70	0	0	29	0.87
11699564--11699594	2	15.5	2	100	0	62	51	0	0	48	1.00
11704133--11704165	2	16.0	2	93	6	57	48	3	0	48	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11705982--11706015	7	5.0	7	89	7	52	14	2	0	82	0.79
11705982--11706015	13	2.5	13	90	4	50	14	2	0	82	0.79
11707200--11707230	2	15.5	2	100	0	62	48	0	0	51	1.00
11715632--11715674	14	3.1	14	86	3	61	9	4	2	83	0.87
11716887--11716916	13	2.2	14	94	5	53	50	6	0	43	1.28
11718158--11718215	30	1.9	30	92	0	98	27	13	8	50	1.71
11720206--11720245	20	1.9	20	85	10	53	72	0	12	15	1.12
11722165--11722262	33	3.0	33	80	5	94	27	18	7	46	1.75
11722178--11722262	33	2.6	33	83	5	102	27	17	7	48	1.73
11722361--11722578	33	6.6	33	68	10	113	26	18	8	47	1.76
11722306--11722486	99	1.8	99	81	2	229	27	17	9	44	1.80
11722533--11722596	33	1.9	33	84	12	87	23	20	4	51	1.66
11723556--11723604	17	2.7	19	75	12	50	73	0	26	0	0.83
11723896--11723983	40	2.2	41	85	6	126	44	10	3	42	1.55
11724987--11725019	16	2.0	17	88	5	50	18	3	0	78	0.87
11724981--11725047	18	3.8	17	73	11	55	20	4	0	74	0.99
11737592--11737636	23	2.0	22	87	12	65	2	15	2	80	0.92
11738532--11738580	23	2.1	23	84	0	62	4	10	2	83	0.85
11738945--11738999	23	2.4	22	84	6	65	9	10	3	76	1.13
11742020--11742094	23	3.3	22	80	14	82	21	0	25	53	1.46
11742020--11742244	8	28.6	8	64	15	60	21	0	29	47	1.57
11742171--11742222	27	2.0	26	84	3	68	23	0	32	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11743092--11743138	23	2.0	24	84	12	62	19	14	0	65	1.26
11743092--11743235	24	5.8	24	66	16	71	20	14	4	60	1.52
11743106--11743163	29	2.0	29	82	3	71	15	13	1	68	1.28
11743245--11743322	32	2.4	32	78	4	77	12	7	14	65	1.46
11744424--11744462	6	6.5	6	87	0	51	76	0	7	15	0.99
11744697--11744786	34	2.6	35	84	10	107	50	8	17	23	1.74
11745136--11745177	22	1.9	22	85	0	57	33	26	16	23	1.96
11745249--11745379	64	2.0	64	82	5	158	27	12	23	36	1.91
11745263--11745400	64	2.2	65	81	7	158	27	11	21	39	1.88
11745249--11745597	161	2.2	161	96	0	635	28	12	21	37	1.90
11745313--11745497	97	1.9	97	83	6	241	28	13	21	36	1.91
11745410--11745540	64	2.0	64	82	5	158	28	13	23	34	1.93
11745761--11745823	22	2.9	22	80	4	74	26	12	22	38	1.90
11746863--11746924	25	2.4	25	81	2	70	6	20	1	70	1.17
11746879--11746924	12	3.4	14	77	20	53	6	19	2	71	1.18
11747373--11747416	14	2.9	15	83	10	54	2	18	0	79	0.83
11747371--11747441	10	6.9	10	79	4	70	4	12	1	81	0.90
11748148--11748193	22	2.1	21	84	4	56	26	15	21	36	1.93
11748161--11748201	21	1.9	22	90	5	66	21	9	21	46	1.80
11761066--11761108	20	2.4	19	82	17	56	16	6	13	62	1.51
11761067--11761114	16	2.7	19	81	18	59	16	6	12	64	1.46
11761075--11761117	17	2.5	17	81	7	52	13	9	9	67	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11763248--11763305	29	2.0	29	96	0	107	31	18	3	46	1.66
11767982--11768027	24	1.9	24	90	0	74	23	17	19	39	1.92
11769857--11769883	2	13.5	2	100	0	54	48	0	0	51	1.00
11772679--11772709	1	31.0	1	100	0	62	100	0	0	0	0.00
11774567--11774666	21	4.7	21	75	1	83	34	6	7	53	1.53
11774862--11774938	11	7.0	11	70	5	57	40	5	2	51	1.38
11774862--11774947	22	4.0	22	83	4	95	40	5	2	51	1.39
11774878--11775039	22	7.4	22	70	13	84	38	8	4	48	1.54
11775090--11775170	22	3.8	21	75	6	74	37	8	3	50	1.51
11775254--11775305	22	2.4	22	83	6	61	40	13	1	44	1.55
11788018--11788305	156	1.8	158	90	1	463	43	17	9	29	1.81
11802683--11802708	8	3.2	8	100	0	52	26	46	11	15	1.80
11815555--11815595	18	2.3	18	91	0	64	29	2	0	68	1.03
11816909--11816986	31	2.5	31	83	2	86	37	12	19	30	1.89
11818905--11818942	9	4.2	9	80	12	51	50	7	34	7	1.61
11822282--11822309	2	14.0	2	100	0	56	50	0	0	50	1.00
11826548--11826622	25	2.9	25	76	11	80	46	2	0	50	1.15
11826846--11826892	23	2.1	22	96	4	85	36	10	8	44	1.70
11827574--11827613	21	1.9	21	94	0	71	50	17	0	32	1.47
11830802--11830840	16	2.4	16	86	0	51	74	0	7	17	1.05
11831140--11831197	23	2.6	23	86	2	73	51	3	6	37	1.46
11832632--11832780	63	2.4	61	79	9	156	37	6	8	47	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11832897--11833187	63	4.7	61	74	15	160	36	7	10	45	1.67
11833087--11833307	58	3.7	57	76	10	194	38	9	10	40	1.74
11835000--11835035	16	2.2	16	100	0	72	30	11	11	47	1.74
11835056--11835489	216	2.0	216	87	0	618	33	13	17	34	1.90
11837720--11837772	22	2.4	22	78	9	54	67	7	5	18	1.35
11838554--11838629	37	2.1	37	92	0	125	28	23	14	32	1.94
11843661--11843766	32	3.3	31	73	10	106	50	7	2	39	1.46
11843772--11843830	12	4.9	12	71	22	52	40	8	1	49	1.43
11843773--11843847	36	2.1	36	100	0	150	41	9	2	46	1.50
11843826--11843884	26	2.2	28	85	8	79	35	10	1	52	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117