genome.fa.s90.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  16  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4689684--4689768	42	2.0	43	88	2	127	35	1	9	54	1.41
4689657--4689772	11	10.8	11	67	21	59	36	1	9	52	1.44
4690420--4690469	26	1.9	26	92	8	84	44	0	6	50	1.26
4695128--4695286	85	1.9	87	84	7	218	28	12	11	47	1.76
4695400--4695437	20	1.9	19	89	5	58	76	2	7	13	1.11
4696104--4696158	28	2.0	28	85	7	76	60	1	1	36	1.18
4696901--4696982	34	2.7	28	73	26	78	54	0	0	45	0.99
4697386--4697445	29	2.0	30	83	3	77	51	1	1	45	1.21
4697526--4697580	16	3.7	15	72	16	51	47	0	1	50	1.11
4697519--4697610	29	3.2	28	76	8	80	46	0	1	52	1.07
4697739--4697774	2	18.0	2	100	0	72	50	0	0	50	1.00
4705645--4705702	27	2.2	26	81	12	64	53	3	5	37	1.40
4707350--4707382	14	2.4	14	90	10	50	57	6	3	33	1.38
4707433--4707476	21	2.1	21	95	0	79	45	11	6	36	1.67
4712911--4712969	30	2.0	30	96	0	109	28	10	22	38	1.86
4713118--4713154	2	19.0	2	94	5	67	51	0	0	48	1.00
4716410--4716439	2	15.0	2	100	0	60	50	0	0	50	1.00
4721229--4721270	22	1.9	22	95	0	75	45	7	11	35	1.69
4724977--4725202	115	2.0	115	98	0	434	42	13	16	26	1.85
4725288--4725329	22	1.9	22	95	0	75	47	9	9	33	1.68
4735338--4735405	21	3.1	21	71	21	59	60	1	1	36	1.15
4735351--4735405	21	2.5	22	75	18	62	61	1	0	36	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4738410--4738462	26	2.1	26	89	6	83	18	7	24	49	1.74
4762832--4762869	2	19.0	2	100	0	76	50	0	50	0	1.00
4768895--4768941	25	1.9	24	86	4	67	42	0	4	53	1.20
4775053--4775103	18	2.8	18	79	5	50	54	5	5	33	1.48
4781396--4781434	2	19.5	2	100	0	78	48	0	0	51	1.00
4781470--4781494	10	2.5	10	100	0	50	20	0	0	80	0.72
4781829--4781858	2	15.5	2	93	6	53	50	0	0	50	1.00
4785898--4785933	2	18.0	2	100	0	72	50	0	0	50	1.00
4802381--4802419	17	2.2	17	86	9	51	61	0	0	38	0.96
4803696--4803721	13	2.0	13	100	0	52	53	0	7	38	1.30
4805498--4805585	33	2.6	33	74	13	81	59	3	5	31	1.38
4810676--4810700	3	8.3	3	100	0	50	32	0	0	68	0.90
4810994--4811045	19	2.5	21	76	23	56	51	3	0	44	1.19
4811008--4811051	19	2.3	20	81	14	58	54	2	0	43	1.12
4811796--4811836	6	6.3	6	88	11	55	46	4	0	48	1.23
4818782--4818819	17	2.2	18	90	4	60	76	0	0	23	0.79
4820110--4820163	19	2.8	19	91	2	81	68	0	1	29	1.00
4821145--4821182	20	1.9	20	94	0	67	47	2	2	47	1.30
4823028--4823188	30	5.3	30	75	8	92	18	8	58	14	1.61
4823046--4823137	15	6.1	15	74	0	85	18	7	59	14	1.58
4827812--4827844	2	16.5	2	100	0	66	51	0	0	48	1.00
4828628--4828656	9	3.2	9	100	0	58	0	34	10	55	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4829833--4829913	42	1.9	42	89	0	126	33	24	13	28	1.93
4841778--4841805	6	4.7	6	100	0	56	17	17	64	0	1.30
4844385--4844449	34	1.9	34	87	0	94	41	24	12	21	1.87
4846856--4846907	21	2.5	20	72	9	50	38	25	1	34	1.67
4853074--4853100	2	13.5	2	100	0	54	48	0	51	0	1.00
4867952--4867982	16	1.9	16	93	0	53	48	0	0	51	1.00
4869025--4869076	15	3.5	15	86	5	79	36	0	0	63	0.95
4869017--4869074	25	2.3	25	83	16	68	37	0	0	62	0.96
4870893--4870918	2	13.0	2	100	0	52	50	0	0	50	1.00
4878275--4878305	12	2.6	12	94	0	53	3	41	0	54	1.16
4882160--4882200	16	2.4	18	80	8	50	65	9	17	7	1.44
4890012--4890092	6	14.2	6	79	7	64	46	1	0	51	1.08
4890015--4890077	5	12.4	5	82	14	76	42	1	0	55	1.09
4890007--4890078	11	6.8	11	81	16	82	44	1	0	54	1.08
4890016--4890076	19	3.0	20	86	11	81	40	1	0	57	1.08
4890276--4890362	32	2.7	33	83	13	85	52	6	1	39	1.36
4899042--4899084	16	2.6	17	85	7	63	46	0	0	53	1.00
4899308--4899358	26	2.0	26	84	3	68	37	1	1	58	1.20
4905453--4905507	22	2.4	24	81	6	69	43	5	0	50	1.25
4905490--4905537	25	1.9	25	87	8	71	50	2	0	47	1.12
4907256--4907286	2	15.5	2	100	0	62	51	0	48	0	1.00
4915891--4915974	41	2.0	41	86	4	116	40	5	4	48	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4917404--4917454	18	2.7	19	79	11	52	54	1	1	41	1.22
4923314--4923348	2	17.5	2	100	0	70	0	51	0	48	1.00
4923675--4923701	2	13.5	2	100	0	54	48	0	0	51	1.00
4925931--4925957	2	13.5	2	100	0	54	48	0	0	51	1.00
4931272--4931484	103	2.0	104	94	1	374	17	9	20	51	1.74
4934195--4934473	125	2.2	125	79	6	289	37	11	12	39	1.79
4937944--4938299	116	3.1	114	89	6	529	46	5	10	37	1.63
4937897--4938299	58	7.0	57	81	9	408	47	4	11	35	1.62
4944426--4944453	14	2.0	14	100	0	56	21	21	14	42	1.88
4944494--4944595	42	2.5	41	95	1	177	22	17	24	35	1.95
4944466--4944595	42	3.1	41	88	6	176	23	16	23	36	1.94
4944621--4944858	103	2.3	103	82	13	281	45	10	14	28	1.79
4944831--4944874	13	3.3	13	78	6	52	79	2	6	11	1.01
4947245--4947515	116	2.4	114	91	3	427	44	6	12	35	1.69
4947245--4947516	57	4.7	57	84	3	330	44	6	12	35	1.70
4953627--4953692	33	2.0	33	100	0	132	45	18	9	27	1.79
4955453--4955500	14	3.4	15	83	11	57	50	0	0	50	1.00
4955465--4955502	14	2.5	15	87	12	60	52	0	0	47	1.00
4968935--4968973	20	1.9	20	84	5	51	43	0	2	53	1.14
4970304--4970335	11	2.9	11	100	0	64	62	0	0	37	0.95
4975991--4976023	3	11.0	3	100	0	66	33	0	0	66	0.92
4976400--4976456	30	1.9	30	85	7	80	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4976407--4976457	16	3.1	16	85	5	57	37	0	0	62	0.95
4976444--4976494	21	2.5	21	90	3	77	50	0	0	49	1.00
4977090--4977131	19	2.2	19	87	8	59	57	0	2	40	1.12
4977749--4977778	10	3.1	10	95	4	53	63	0	0	36	0.95
4977879--4977928	22	2.3	22	96	0	91	52	4	0	44	1.20
4978558--4978613	18	3.1	18	82	12	53	64	0	1	33	1.04
4978560--4978621	24	2.6	24	82	7	74	67	0	1	30	1.00
4978559--4978630	22	3.5	20	74	16	58	65	0	1	33	1.02
4980825--4980857	17	1.9	17	88	11	50	42	15	18	24	1.88
4993400--4993463	30	2.2	29	84	13	80	37	3	1	57	1.24
4993400--4993463	27	2.3	27	84	13	76	37	3	1	57	1.24
4993510--4993595	30	2.9	30	88	10	124	54	1	4	39	1.29
4996011--4996063	2	26.5	2	100	0	106	50	49	0	0	1.00
4996061--4996095	16	2.2	16	89	0	52	48	11	2	37	1.54
4997242--4997342	37	2.7	37	87	4	132	32	10	12	43	1.78
5001087--5001125	17	2.4	17	82	4	53	12	20	0	66	1.24
5008708--5008741	2	17.0	2	100	0	68	50	0	0	50	1.00
5013346--5013402	11	4.8	11	85	8	69	54	1	0	43	1.10
5014918--5014963	2	23.0	2	81	0	56	41	0	8	50	1.33
5014918--5014964	8	5.9	8	92	0	67	40	0	10	48	1.38
5025266--5025636	185	2.0	186	98	0	726	38	15	10	35	1.82
5029778--5029805	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5039108--5039141	2	17.0	2	87	0	50	50	5	0	44	1.26
5039424--5039457	12	2.8	12	86	4	50	88	11	0	0	0.52
5040129--5040177	15	3.3	15	77	11	55	10	30	20	38	1.86
5044060--5044130	33	2.2	33	86	0	97	39	11	7	42	1.68
5044651--5044688	17	2.2	18	85	4	51	55	2	0	42	1.14
5044654--5044690	19	1.9	19	88	0	56	51	2	0	45	1.15
5044996--5045020	13	1.9	13	100	0	50	68	0	24	8	1.16
5045918--5045964	17	2.8	17	81	12	60	55	2	4	38	1.31
5046014--5046054	18	2.3	18	87	4	57	70	0	2	26	0.99
5046118--5046179	33	1.9	33	84	12	85	50	3	3	43	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117